Wall clock time and date at job start Tue Mar 31 2020 21:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47145 * 2 1 4 4 O 1.42902 * 109.46989 * 119.99835 * 2 1 3 5 5 C 1.42902 * 114.00334 * 270.00164 * 4 2 1 6 6 C 1.52991 * 109.47241 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.82215 * 305.69784 * 6 5 4 8 8 C 1.54384 * 109.83250 * 184.81213 * 6 5 4 9 9 C 1.55446 * 102.18705 * 219.18141 * 8 6 5 10 10 C 1.54942 * 100.99143 * 34.03965 * 9 8 6 11 11 O 1.43237 * 109.83227 * 66.58704 * 6 5 4 12 12 C 1.50696 * 109.47195 * 240.00187 * 2 1 3 13 13 O 1.21278 * 119.99899 * 245.00182 * 12 2 1 14 14 N 1.34777 * 119.99957 * 64.99893 * 12 2 1 15 15 C 1.47852 * 134.35974 * 180.02562 * 14 12 2 16 16 C 1.52561 * 85.66275 * 156.34556 * 15 14 12 17 17 C 1.47846 * 134.36344 * 359.97201 * 14 12 2 18 18 C 1.53852 * 115.93704 * 265.03367 * 16 15 14 19 19 C 1.55401 * 101.30710 * 196.14782 * 18 16 15 20 20 N 1.47542 * 104.88102 * 35.96983 * 19 18 16 21 21 C 1.36939 * 125.65479 * 155.98740 * 20 19 18 22 22 H 1.07996 * 120.00149 * 341.85845 * 21 20 19 23 23 C 1.38813 * 120.00072 * 162.13820 * 21 20 19 24 24 N 1.31623 * 119.99877 * 155.83603 * 23 21 20 25 25 Si 1.86798 * 119.99934 * 335.83754 * 23 21 20 26 26 H 1.48499 * 109.47211 * 84.62283 * 25 23 21 27 27 H 1.48499 * 109.47227 * 204.62292 * 25 23 21 28 28 H 1.48501 * 109.46779 * 324.62137 * 25 23 21 29 29 C 1.47355 * 108.68698 * 335.72093 * 20 19 18 30 30 H 1.09006 * 109.47418 * 59.99643 * 1 2 3 31 31 H 1.08994 * 109.47512 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46900 * 300.00103 * 1 2 3 33 33 H 1.09007 * 109.46845 * 300.00085 * 5 4 2 34 34 H 1.08999 * 109.47305 * 59.99645 * 5 4 2 35 35 H 1.09006 * 110.84526 * 337.32078 * 8 6 5 36 36 H 1.09002 * 110.84395 * 100.93707 * 8 6 5 37 37 H 1.09003 * 111.05916 * 276.11712 * 9 8 6 38 38 H 1.09002 * 111.18218 * 152.00806 * 9 8 6 39 39 H 1.08999 * 110.31213 * 204.69250 * 10 9 8 40 40 H 1.09001 * 110.39571 * 82.56140 * 10 9 8 41 41 H 1.08996 * 113.84396 * 42.15984 * 15 14 12 42 42 H 1.09003 * 113.95015 * 270.54327 * 15 14 12 43 43 H 1.09007 * 113.84149 * 89.46778 * 17 14 12 44 44 H 1.08994 * 113.84517 * 317.83366 * 17 14 12 45 45 H 1.09002 * 111.03521 * 314.37793 * 18 16 15 46 46 H 1.09001 * 111.03328 * 78.30561 * 18 16 15 47 47 H 1.09000 * 110.48548 * 277.08413 * 19 18 16 48 48 H 1.08999 * 110.30512 * 154.76733 * 19 18 16 49 49 H 0.97001 * 119.99276 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.98466 * 121.64020 * 29 20 19 51 51 H 1.09004 * 109.98889 * 242.90330 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2942 6 6 2.7090 -0.6406 3.4788 7 1 2.0313 -1.4729 3.6688 8 6 2.8063 0.2526 4.7343 9 6 4.1205 -0.2509 5.3943 10 6 4.9626 -0.6052 4.1428 11 8 4.0223 -1.1379 3.1965 12 6 2.0323 -0.7103 -1.2304 13 8 2.6529 -1.7466 -1.1215 14 7 1.7919 -0.1941 -2.4520 15 6 2.1228 -0.6075 -3.8324 16 6 0.9226 0.2370 -4.2495 17 6 1.0913 1.0107 -2.9455 18 6 -0.4070 -0.5190 -4.4152 19 6 -1.2442 0.5106 -5.2239 20 7 -0.2761 1.1583 -6.1296 21 6 -0.5796 1.7720 -7.3155 22 1 -1.5206 1.5673 -7.8042 23 6 0.3249 2.6530 -7.8925 24 7 0.2920 2.8741 -9.1896 25 14 1.5885 3.5245 -6.8281 26 1 2.7701 2.6446 -6.6416 27 1 2.0096 4.7847 -7.4912 28 1 0.9903 3.8371 -5.5053 29 6 1.0707 1.0408 -5.5431 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9320 0.9514 2.0451 34 1 1.2538 0.6547 2.5589 35 1 2.8895 1.3036 4.4572 36 1 1.9529 0.0903 5.3928 37 1 3.9378 -1.1333 6.0075 38 1 4.5959 0.5380 5.9772 39 1 5.7141 -1.3544 4.3921 40 1 5.4393 0.2886 3.7402 41 1 1.9957 -1.6745 -4.0153 42 1 3.0777 -0.2241 -4.1922 43 1 1.7322 1.8881 -3.0334 44 1 0.1528 1.2165 -2.4308 45 1 -0.2650 -1.4418 -4.9778 46 1 -0.8663 -0.7196 -3.4473 47 1 -1.6902 1.2479 -4.5565 48 1 -2.0180 0.0013 -5.7983 49 1 0.9242 3.4895 -9.5927 50 1 1.7330 0.5177 -6.2329 51 1 1.4691 2.0313 -5.3234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148880616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:00 Heat of formation + Delta-G solvation = -49.987435 kcal Electronic energy + Delta-G solvation = -30219.709540 eV Core-core repulsion = 26121.891142 eV Total energy + Delta-G solvation = -4097.818398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.84087 -39.96468 -38.88953 -37.31439 -35.84632 -32.72452 -32.50051 -32.13332 -30.60155 -29.78577 -28.88995 -26.35199 -26.28821 -25.89350 -24.07391 -23.33412 -22.15395 -21.56711 -20.57774 -19.54701 -18.56269 -17.52553 -17.27778 -17.01840 -16.94972 -16.26396 -16.03143 -15.89943 -15.31490 -15.02540 -14.78132 -14.45881 -14.20765 -13.95760 -13.63242 -13.40187 -13.08372 -13.04636 -13.01373 -12.80153 -12.48412 -12.37318 -12.24161 -12.17627 -11.94748 -11.80125 -11.63421 -11.46899 -11.35121 -11.29403 -11.28212 -11.04961 -10.63183 -10.53249 -10.32862 -10.07218 -9.91480 -9.81701 -9.43785 -9.37509 -8.67603 -8.64357 -7.11706 -5.98621 -3.27120 2.48990 2.63932 3.29625 3.33647 3.40888 3.46071 3.57373 3.99128 4.21503 4.36229 4.43281 4.46354 4.50867 4.62995 4.68788 4.73268 4.79208 4.79902 4.86331 4.90748 4.99745 5.13911 5.16699 5.19593 5.21602 5.29792 5.32453 5.35066 5.38047 5.44046 5.47508 5.49245 5.54015 5.67297 5.70756 5.74520 5.82776 5.90010 5.96695 6.04319 6.22222 6.34980 6.55475 6.57207 6.66989 6.72078 6.89057 7.63817 7.70602 8.19382 8.27721 8.79055 9.64947 10.13294 11.17817 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.002251 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.076937 B =12434.401785 C =12756.411162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.082 0.918 4 O -0.347 6.347 5 C 0.050 3.950 6 C 0.084 3.916 7 H 0.090 0.910 8 C -0.149 4.149 9 C -0.156 4.156 10 C 0.045 3.955 11 O -0.363 6.363 12 C 0.536 3.464 13 O -0.521 6.521 14 N -0.641 5.641 15 C 0.127 3.873 16 C -0.104 4.104 17 C 0.111 3.889 18 C -0.105 4.105 19 C 0.134 3.866 20 N -0.609 5.609 21 C -0.242 4.242 22 H 0.093 0.907 23 C 0.021 3.979 24 N -0.905 5.905 25 Si 0.884 3.116 26 H -0.285 1.285 27 H -0.304 1.304 28 H -0.279 1.279 29 C 0.135 3.865 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.025 0.975 48 H 0.051 0.949 49 H 0.263 0.737 50 H 0.049 0.951 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 -3.367 28.475 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 H 0.100 0.900 4 O -0.265 6.265 5 C -0.028 4.028 6 C 0.026 3.974 7 H 0.108 0.892 8 C -0.186 4.186 9 C -0.193 4.193 10 C -0.032 4.032 11 O -0.282 6.282 12 C 0.324 3.676 13 O -0.396 6.396 14 N -0.378 5.378 15 C 0.005 3.995 16 C -0.106 4.106 17 C -0.012 4.012 18 C -0.143 4.143 19 C 0.008 3.992 20 N -0.336 5.336 21 C -0.369 4.369 22 H 0.111 0.889 23 C -0.178 4.178 24 N -0.549 5.549 25 Si 0.716 3.284 26 H -0.213 1.213 27 H -0.232 1.232 28 H -0.206 1.206 29 C 0.010 3.990 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.892 -4.238 28.354 28.931 hybrid contribution 0.740 1.330 0.697 1.674 sum 4.632 -2.908 29.051 29.561 Atomic orbital electron populations 1.22292 0.93480 1.03969 1.03237 1.21797 0.95140 0.95997 0.85562 0.90024 1.88101 1.86443 1.33409 1.18534 1.23059 0.99436 0.93206 0.87050 1.22737 0.86171 0.96452 0.92039 0.89243 1.23146 0.99091 1.00274 0.96136 1.23297 0.95544 1.02175 0.98314 1.23431 0.92728 0.99038 0.87982 1.88621 1.16374 1.69698 1.53555 1.19961 0.79471 0.85460 0.82701 1.90726 1.39944 1.23477 1.85486 1.50112 1.56639 1.26402 1.04690 1.23029 0.97932 1.00789 0.77789 1.22450 0.96487 0.96744 0.94885 1.23297 0.96762 0.88972 0.92136 1.22473 0.93378 0.98440 1.00034 1.21725 0.92656 0.92972 0.91816 1.44860 1.00428 1.66403 1.21873 1.18650 1.05451 1.19341 0.93457 0.88925 1.24960 0.98162 0.99106 0.95544 1.69867 1.38449 1.37848 1.08709 0.86945 0.81718 0.79372 0.80382 1.21265 1.23216 1.20589 1.21373 0.89912 0.96412 0.91299 0.90469 0.90972 0.91392 0.92826 0.92109 0.90181 0.89446 0.90138 0.89737 0.89599 0.92275 0.89561 0.89465 0.89360 0.89452 0.90449 0.91353 0.95711 0.93080 0.92690 0.93300 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.44 37.16 0.35 -1.31 16 2 C 0.08 0.93 2.91 -27.88 -0.08 0.85 16 3 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 4 O -0.35 -4.74 9.51 -58.76 -0.56 -5.30 16 5 C 0.05 0.47 5.28 37.15 0.20 0.67 16 6 C 0.08 0.77 3.81 -26.01 -0.10 0.67 16 7 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 8 C -0.15 -0.83 6.56 -24.71 -0.16 -0.99 16 9 C -0.16 -0.83 7.16 -24.41 -0.17 -1.00 16 10 C 0.04 0.35 7.78 38.18 0.30 0.65 16 11 O -0.36 -4.36 11.00 -37.68 -0.41 -4.77 16 12 C 0.54 8.40 7.41 -10.99 -0.08 8.32 16 13 O -0.52 -10.45 17.23 -14.30 -0.25 -10.70 16 14 N -0.64 -9.13 3.60 -185.65 -0.67 -9.80 16 15 C 0.13 1.84 8.16 -3.53 -0.03 1.81 16 16 C -0.10 -1.61 0.97 -154.71 -0.15 -1.76 16 17 C 0.11 1.45 7.50 -3.53 -0.03 1.43 16 18 C -0.11 -1.55 6.43 -25.01 -0.16 -1.71 16 19 C 0.13 2.42 7.26 -2.20 -0.02 2.40 16 20 N -0.61 -13.91 3.22 -170.20 -0.55 -14.45 16 21 C -0.24 -6.63 10.56 -15.06 -0.16 -6.79 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.02 0.60 5.43 -17.43 -0.09 0.50 16 24 N -0.91 -27.40 13.97 55.49 0.78 -26.63 16 25 Si 0.88 21.85 24.39 -169.99 -4.15 17.70 16 26 H -0.29 -6.77 6.83 56.52 0.39 -6.38 16 27 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 28 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 29 C 0.14 2.73 4.59 -3.56 -0.02 2.71 16 30 H 0.08 0.69 5.59 -51.93 -0.29 0.40 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 33 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 35 H 0.08 0.38 7.85 -51.93 -0.41 -0.03 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.13 8.00 -51.93 -0.42 0.71 16 44 H 0.09 0.98 5.98 -51.93 -0.31 0.67 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 47 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 51 H 0.03 0.63 3.37 -51.93 -0.18 0.46 16 LS Contribution 397.59 15.07 5.99 5.99 Total: -1.00 -35.55 397.59 -8.96 -44.51 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.74 Total: -2.99 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.41 Total: 6.45 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.44 Total: -50.89 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.22 Total: -20.78 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.55 -8.96 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148880616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.481 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds