Wall clock time and date at job start Tue Mar 31 2020 21:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47145 * 2 1 4 4 O 1.42902 * 109.46989 * 119.99835 * 2 1 3 5 5 C 1.42902 * 114.00334 * 270.00164 * 4 2 1 6 6 C 1.52991 * 109.47241 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.82215 * 305.69784 * 6 5 4 8 8 C 1.54384 * 109.83250 * 184.81213 * 6 5 4 9 9 C 1.55446 * 102.18705 * 219.18141 * 8 6 5 10 10 C 1.54942 * 100.99143 * 34.03965 * 9 8 6 11 11 O 1.43237 * 109.83227 * 66.58704 * 6 5 4 12 12 C 1.50696 * 109.47195 * 240.00187 * 2 1 3 13 13 O 1.21278 * 119.99899 * 245.00182 * 12 2 1 14 14 N 1.34777 * 119.99957 * 64.99893 * 12 2 1 15 15 C 1.47852 * 134.35974 * 180.02562 * 14 12 2 16 16 C 1.52561 * 85.66275 * 156.34556 * 15 14 12 17 17 C 1.47846 * 134.36344 * 359.97201 * 14 12 2 18 18 C 1.53852 * 115.93704 * 265.03367 * 16 15 14 19 19 C 1.55401 * 101.30710 * 196.14782 * 18 16 15 20 20 N 1.47542 * 104.88102 * 35.96983 * 19 18 16 21 21 C 1.36939 * 125.65479 * 155.98740 * 20 19 18 22 22 H 1.07996 * 120.00149 * 341.85845 * 21 20 19 23 23 C 1.38813 * 120.00072 * 162.13820 * 21 20 19 24 24 N 1.31623 * 119.99877 * 155.83603 * 23 21 20 25 25 Si 1.86798 * 119.99934 * 335.83754 * 23 21 20 26 26 H 1.48499 * 109.47211 * 84.62283 * 25 23 21 27 27 H 1.48499 * 109.47227 * 204.62292 * 25 23 21 28 28 H 1.48501 * 109.46779 * 324.62137 * 25 23 21 29 29 C 1.47355 * 108.68698 * 335.72093 * 20 19 18 30 30 H 1.09006 * 109.47418 * 59.99643 * 1 2 3 31 31 H 1.08994 * 109.47512 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46900 * 300.00103 * 1 2 3 33 33 H 1.09007 * 109.46845 * 300.00085 * 5 4 2 34 34 H 1.08999 * 109.47305 * 59.99645 * 5 4 2 35 35 H 1.09006 * 110.84526 * 337.32078 * 8 6 5 36 36 H 1.09002 * 110.84395 * 100.93707 * 8 6 5 37 37 H 1.09003 * 111.05916 * 276.11712 * 9 8 6 38 38 H 1.09002 * 111.18218 * 152.00806 * 9 8 6 39 39 H 1.08999 * 110.31213 * 204.69250 * 10 9 8 40 40 H 1.09001 * 110.39571 * 82.56140 * 10 9 8 41 41 H 1.08996 * 113.84396 * 42.15984 * 15 14 12 42 42 H 1.09003 * 113.95015 * 270.54327 * 15 14 12 43 43 H 1.09007 * 113.84149 * 89.46778 * 17 14 12 44 44 H 1.08994 * 113.84517 * 317.83366 * 17 14 12 45 45 H 1.09002 * 111.03521 * 314.37793 * 18 16 15 46 46 H 1.09001 * 111.03328 * 78.30561 * 18 16 15 47 47 H 1.09000 * 110.48548 * 277.08413 * 19 18 16 48 48 H 1.08999 * 110.30512 * 154.76733 * 19 18 16 49 49 H 0.97001 * 119.99276 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.98466 * 121.64020 * 29 20 19 51 51 H 1.09004 * 109.98889 * 242.90330 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2942 6 6 2.7090 -0.6406 3.4788 7 1 2.0313 -1.4729 3.6688 8 6 2.8063 0.2526 4.7343 9 6 4.1205 -0.2509 5.3943 10 6 4.9626 -0.6052 4.1428 11 8 4.0223 -1.1379 3.1965 12 6 2.0323 -0.7103 -1.2304 13 8 2.6529 -1.7466 -1.1215 14 7 1.7919 -0.1941 -2.4520 15 6 2.1228 -0.6075 -3.8324 16 6 0.9226 0.2370 -4.2495 17 6 1.0913 1.0107 -2.9455 18 6 -0.4070 -0.5190 -4.4152 19 6 -1.2442 0.5106 -5.2239 20 7 -0.2761 1.1583 -6.1296 21 6 -0.5796 1.7720 -7.3155 22 1 -1.5206 1.5673 -7.8042 23 6 0.3249 2.6530 -7.8925 24 7 0.2920 2.8741 -9.1896 25 14 1.5885 3.5245 -6.8281 26 1 2.7701 2.6446 -6.6416 27 1 2.0096 4.7847 -7.4912 28 1 0.9903 3.8371 -5.5053 29 6 1.0707 1.0408 -5.5431 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9320 0.9514 2.0451 34 1 1.2538 0.6547 2.5589 35 1 2.8895 1.3036 4.4572 36 1 1.9529 0.0903 5.3928 37 1 3.9378 -1.1333 6.0075 38 1 4.5959 0.5380 5.9772 39 1 5.7141 -1.3544 4.3921 40 1 5.4393 0.2886 3.7402 41 1 1.9957 -1.6745 -4.0153 42 1 3.0777 -0.2241 -4.1922 43 1 1.7322 1.8881 -3.0334 44 1 0.1528 1.2165 -2.4308 45 1 -0.2650 -1.4418 -4.9778 46 1 -0.8663 -0.7196 -3.4473 47 1 -1.6902 1.2479 -4.5565 48 1 -2.0180 0.0013 -5.7983 49 1 0.9242 3.4895 -9.5927 50 1 1.7330 0.5177 -6.2329 51 1 1.4691 2.0313 -5.3234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148880616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:59 Heat of formation + Delta-G solvation = -74.720017 kcal Electronic energy + Delta-G solvation = -30220.782025 eV Core-core repulsion = 26121.891142 eV Total energy + Delta-G solvation = -4098.890883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.03082 -40.65620 -39.97437 -38.36198 -37.35519 -34.33736 -33.38979 -33.02986 -31.63161 -31.03261 -30.21897 -27.68969 -27.43321 -26.61002 -25.64197 -24.36637 -22.64204 -22.23827 -22.18186 -20.73150 -19.75386 -18.97965 -18.38976 -18.01392 -17.91960 -17.37255 -17.07321 -16.86770 -16.47458 -16.15752 -16.04893 -15.44436 -15.40641 -15.07665 -14.83787 -14.57896 -14.31184 -14.17233 -14.11545 -13.76529 -13.70371 -13.48308 -13.37520 -13.05002 -12.95078 -12.84431 -12.67225 -12.60115 -12.43966 -12.32803 -12.18367 -12.09911 -11.93978 -11.81376 -11.72078 -11.51812 -11.19568 -10.99878 -10.72771 -10.53075 -10.48677 -9.81520 -9.04407 -8.15369 -5.39703 1.32524 1.40173 1.43356 1.50275 1.53031 2.44475 2.58101 2.93534 3.02637 3.16092 3.30275 3.43473 3.54019 3.55392 3.80273 3.87684 3.93122 3.94537 3.98111 4.04804 4.14868 4.22806 4.27198 4.35064 4.39137 4.42848 4.47116 4.54367 4.59056 4.61767 4.63159 4.71268 4.76174 4.78312 4.81487 4.87164 4.88134 4.92901 5.01303 5.02239 5.04404 5.16939 5.21083 5.23969 5.36649 5.70682 5.99562 6.13189 6.19403 6.56921 6.78671 7.04369 7.57045 8.13447 9.04777 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.002251 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.076937 B =12434.401785 C =12756.411162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.078 3.922 3 H 0.106 0.894 4 O -0.383 6.383 5 C 0.045 3.955 6 C 0.073 3.927 7 H 0.079 0.921 8 C -0.139 4.139 9 C -0.149 4.149 10 C 0.034 3.966 11 O -0.407 6.407 12 C 0.531 3.469 13 O -0.577 6.577 14 N -0.635 5.635 15 C 0.122 3.878 16 C -0.098 4.098 17 C 0.118 3.882 18 C -0.091 4.091 19 C 0.128 3.872 20 N -0.627 5.627 21 C -0.232 4.232 22 H 0.059 0.941 23 C -0.042 4.042 24 N -0.957 5.957 25 Si 0.948 3.052 26 H -0.273 1.273 27 H -0.315 1.315 28 H -0.258 1.258 29 C 0.132 3.868 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.044 0.956 48 H 0.045 0.955 49 H 0.261 0.739 50 H 0.030 0.970 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -2.142 32.372 32.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 H 0.123 0.877 4 O -0.302 6.302 5 C -0.031 4.031 6 C 0.016 3.984 7 H 0.097 0.903 8 C -0.177 4.177 9 C -0.186 4.186 10 C -0.042 4.042 11 O -0.327 6.327 12 C 0.321 3.679 13 O -0.456 6.456 14 N -0.371 5.371 15 C -0.001 4.001 16 C -0.100 4.100 17 C -0.003 4.003 18 C -0.129 4.129 19 C 0.004 3.996 20 N -0.354 5.354 21 C -0.360 4.360 22 H 0.077 0.923 23 C -0.237 4.237 24 N -0.604 5.604 25 Si 0.777 3.223 26 H -0.199 1.199 27 H -0.244 1.244 28 H -0.183 1.183 29 C 0.007 3.993 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.135 0.865 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.048 0.952 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.535 -3.012 32.305 32.637 hybrid contribution 0.795 0.845 -0.575 1.295 sum 4.331 -2.167 31.730 32.097 Atomic orbital electron populations 1.22273 0.91245 1.03650 1.05080 1.21908 0.96651 0.96114 0.83593 0.87659 1.88072 1.86862 1.35444 1.19789 1.23299 1.01029 0.92863 0.85910 1.22944 0.84935 0.96942 0.93591 0.90274 1.23152 0.99816 1.00124 0.94579 1.23292 0.95060 1.02989 0.97261 1.23629 0.92728 0.99129 0.88731 1.88573 1.18087 1.70840 1.55224 1.20737 0.78492 0.84880 0.83818 1.90699 1.42550 1.26034 1.86289 1.50075 1.56141 1.26607 1.04262 1.23059 0.97868 1.00773 0.78357 1.22346 0.97048 0.96892 0.93697 1.23432 0.98198 0.88440 0.90279 1.22406 0.92416 0.97145 1.00918 1.21942 0.92278 0.93785 0.91578 1.44956 1.02896 1.66027 1.21549 1.18588 1.03859 1.18719 0.94879 0.92288 1.25643 1.01153 1.00399 0.96475 1.70007 1.40437 1.39307 1.10621 0.85920 0.79673 0.77519 0.79142 1.19905 1.24412 1.18312 1.21404 0.88151 0.96640 0.93086 0.89315 0.92383 0.88758 0.92704 0.88985 0.88903 0.87542 0.89895 0.87618 0.89492 0.92005 0.89621 0.89023 0.88266 0.86456 0.90712 0.88139 0.93802 0.93681 0.93027 0.95160 0.95763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.44 71.98 0.68 -1.82 16 2 C 0.08 1.67 2.91 29.85 0.09 1.76 16 3 H 0.11 1.72 7.79 -2.39 -0.02 1.70 16 4 O -0.38 -9.88 9.51 -126.48 -1.20 -11.09 16 5 C 0.05 0.76 5.28 71.98 0.38 1.14 16 6 C 0.07 1.24 3.81 31.06 0.12 1.36 16 7 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 8 C -0.14 -1.15 6.56 31.91 0.21 -0.94 16 9 C -0.15 -1.24 7.16 32.10 0.23 -1.01 16 10 C 0.03 0.50 7.78 72.65 0.57 1.07 16 11 O -0.41 -9.74 11.00 -146.64 -1.61 -11.36 16 12 C 0.53 15.64 7.41 87.66 0.65 16.29 16 13 O -0.58 -23.08 17.23 15.97 0.28 -22.81 16 14 N -0.63 -16.27 3.60 -859.68 -3.09 -19.36 16 15 C 0.12 3.29 8.16 85.97 0.70 4.00 16 16 C -0.10 -2.74 0.97 -52.10 -0.05 -2.79 16 17 C 0.12 2.58 7.50 85.98 0.65 3.22 16 18 C -0.09 -2.41 6.43 31.71 0.20 -2.20 16 19 C 0.13 4.35 7.26 87.01 0.63 4.98 16 20 N -0.63 -28.04 3.22 -692.38 -2.23 -30.27 16 21 C -0.23 -12.91 10.56 84.03 0.89 -12.02 16 22 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 23 C -0.04 -2.44 5.43 84.86 0.46 -1.98 16 24 N -0.96 -59.85 13.97 21.65 0.30 -59.55 16 25 Si 0.95 45.05 24.39 68.60 1.67 46.73 16 26 H -0.27 -12.23 6.83 99.48 0.68 -11.55 16 27 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 28 H -0.26 -11.23 6.87 99.48 0.68 -10.54 16 29 C 0.13 5.09 4.59 86.22 0.40 5.48 16 30 H 0.09 1.11 5.59 -2.38 -0.01 1.10 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 0.95 7.87 -2.38 -0.02 0.93 16 33 H 0.05 0.88 8.09 -2.38 -0.02 0.86 16 34 H 0.09 0.91 7.87 -2.39 -0.02 0.89 16 35 H 0.09 0.54 7.85 -2.38 -0.02 0.52 16 36 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 2.33 8.12 -2.39 -0.02 2.31 16 42 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.10 2.05 8.00 -2.38 -0.02 2.03 16 44 H 0.12 1.92 5.98 -2.39 -0.01 1.90 16 45 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.10 2.08 8.06 -2.39 -0.02 2.06 16 47 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 50 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 51 H 0.03 0.99 3.37 -2.38 -0.01 0.98 16 Total: -1.00 -81.62 397.59 1.76 -79.86 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.86 Total: 11.30 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 6.79 Total: 16.54 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -5.02 Total: -109.18 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -2.54 Total: -45.25 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.73 kcal Total: -81.62 1.76 -79.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148880616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.144 kcal (2) G-P(sol) polarization free energy of solvation -81.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds