Wall clock time and date at job start Tue Mar 31 2020 21:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47128 * 2 1 4 4 O 1.42903 * 109.46614 * 119.99877 * 2 1 3 5 5 C 1.42890 * 113.99933 * 269.99720 * 4 2 1 6 6 C 1.53004 * 109.47071 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.82259 * 54.43338 * 6 5 4 8 8 C 1.54383 * 109.90564 * 175.37067 * 6 5 4 9 9 C 1.55566 * 102.27674 * 140.90940 * 8 6 5 10 10 C 1.54944 * 100.82489 * 325.88222 * 9 8 6 11 11 O 1.43235 * 109.82747 * 293.54363 * 6 5 4 12 12 C 1.50704 * 109.47010 * 239.99463 * 2 1 3 13 13 O 1.21276 * 120.00125 * 245.00025 * 12 2 1 14 14 N 1.34780 * 119.99537 * 65.00794 * 12 2 1 15 15 C 1.47358 * 135.88124 * 359.62317 * 14 12 2 16 16 C 1.52258 * 87.47007 * 154.22728 * 15 14 12 17 17 C 1.47349 * 135.87413 * 179.97438 * 14 12 2 18 18 C 1.53722 * 116.39330 * 142.36890 * 16 15 14 19 19 C 1.55176 * 101.38544 * 165.09660 * 18 16 15 20 20 N 1.47555 * 105.03386 * 324.50868 * 19 18 16 21 21 C 1.36942 * 125.66203 * 203.91674 * 20 19 18 22 22 H 1.07989 * 120.00207 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99784 * 359.97438 * 21 20 19 24 24 N 1.31622 * 119.99823 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00044 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47053 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47107 * 119.99986 * 25 23 21 28 28 H 1.48498 * 109.47138 * 240.00077 * 25 23 21 29 29 C 1.47406 * 108.68094 * 23.89565 * 20 19 18 30 30 H 1.08999 * 109.46850 * 60.00114 * 1 2 3 31 31 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.46966 * 300.00306 * 1 2 3 33 33 H 1.08996 * 109.47105 * 60.00557 * 5 4 2 34 34 H 1.08998 * 109.47497 * 300.00279 * 5 4 2 35 35 H 1.09007 * 110.84628 * 259.10369 * 8 6 5 36 36 H 1.09000 * 110.84920 * 22.71783 * 8 6 5 37 37 H 1.08997 * 111.22347 * 207.97660 * 9 8 6 38 38 H 1.09003 * 111.13190 * 83.74257 * 9 8 6 39 39 H 1.09002 * 110.30953 * 277.47426 * 10 9 8 40 40 H 1.09000 * 110.30834 * 155.40499 * 10 9 8 41 41 H 1.09005 * 113.53105 * 268.85413 * 15 14 12 42 42 H 1.08992 * 113.52799 * 39.49904 * 15 14 12 43 43 H 1.09003 * 113.53563 * 320.49627 * 17 14 12 44 44 H 1.09002 * 113.53483 * 91.14971 * 17 14 12 45 45 H 1.09001 * 111.04231 * 283.12319 * 18 16 15 46 46 H 1.09006 * 111.03659 * 47.06744 * 18 16 15 47 47 H 1.08998 * 110.33101 * 205.62096 * 19 18 16 48 48 H 1.09002 * 110.42024 * 83.44407 * 19 18 16 49 49 H 0.96996 * 119.99671 * 179.97438 * 24 23 21 50 50 H 1.08994 * 109.99105 * 238.51876 * 29 20 19 51 51 H 1.09001 * 110.02550 * 117.21445 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2940 6 6 2.7089 -0.6406 3.4789 7 1 3.6025 -1.1930 3.1884 8 6 3.0321 0.2913 4.6665 9 6 2.5307 -0.5379 5.8836 10 6 1.3079 -1.2577 5.2613 11 8 1.6919 -1.5530 3.9090 12 6 2.0324 -0.7105 -1.2304 13 8 2.6530 -1.7468 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 1.0972 0.9928 -2.9808 16 6 2.0071 0.8997 -4.1980 17 6 2.1042 -0.5742 -3.8410 18 6 1.3690 1.2366 -5.5554 19 6 2.6255 1.4189 -6.4476 20 7 3.6346 2.0368 -5.5660 21 6 4.7012 2.7901 -5.9785 22 1 5.3860 3.2003 -5.2513 23 6 4.9021 3.0263 -7.3316 24 7 4.0677 2.5259 -8.2180 25 14 6.3575 4.0532 -7.8945 26 1 7.1393 4.4940 -6.7114 27 1 7.2237 3.2385 -8.7840 28 1 5.8668 5.2429 -8.6355 29 6 3.3037 1.7091 -4.1674 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.2538 0.6546 2.5588 34 1 2.9319 0.9513 2.0450 35 1 4.1047 0.4728 4.7364 36 1 2.4834 1.2294 4.5840 37 1 2.2283 0.1110 6.7055 38 1 3.2850 -1.2545 6.2084 39 1 0.4369 -0.6025 5.2727 40 1 1.0947 -2.1788 5.8037 41 1 0.0459 0.8162 -3.2086 42 1 1.2557 1.8913 -2.3846 43 1 3.1055 -0.9868 -3.9648 44 1 1.3333 -1.1869 -4.3084 45 1 0.7515 0.4126 -5.9129 46 1 0.7922 2.1597 -5.4983 47 1 2.4017 2.0776 -7.2868 48 1 2.9788 0.4531 -6.8089 49 1 4.2079 2.6913 -9.1634 50 1 3.1580 2.6248 -3.5946 51 1 4.1032 1.1156 -3.7240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148880618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:06 Heat of formation + Delta-G solvation = -54.814001 kcal Electronic energy + Delta-G solvation = -29925.200355 eV Core-core repulsion = 25827.172661 eV Total energy + Delta-G solvation = -4098.027694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75255 -39.92114 -38.79644 -37.19309 -35.64879 -32.70174 -32.46893 -31.94144 -30.46471 -29.53923 -28.22308 -26.20265 -25.98864 -25.83106 -24.16835 -23.10434 -22.10025 -21.50540 -20.39709 -19.33402 -18.26377 -17.58707 -17.16753 -16.90771 -16.84381 -16.15860 -15.79090 -15.54231 -15.10959 -14.94865 -14.66959 -14.40899 -13.97774 -13.85540 -13.72077 -13.40568 -13.11262 -12.84255 -12.68415 -12.44620 -12.37248 -12.14677 -12.11257 -12.04380 -11.69413 -11.58321 -11.56587 -11.48426 -11.23878 -11.12617 -10.97577 -10.81645 -10.47292 -10.14045 -10.07532 -9.91036 -9.82582 -9.79830 -9.66913 -9.28486 -8.67443 -8.55428 -6.86471 -5.67856 -3.09298 2.57804 2.73434 3.38559 3.40160 3.44372 3.46659 3.63015 4.03754 4.30360 4.41863 4.44052 4.52624 4.59305 4.70330 4.76137 4.78107 4.85548 4.94522 5.01864 5.08113 5.19124 5.20305 5.26391 5.31633 5.35300 5.40281 5.42959 5.46140 5.49884 5.52332 5.55122 5.64056 5.72105 5.76969 5.87921 5.91863 5.93741 6.15177 6.24471 6.48876 6.53704 6.67489 6.69777 6.73105 6.95356 7.48568 7.60323 7.82448 7.83870 8.27872 8.32978 9.19588 9.79840 10.44428 11.36257 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.002118 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.387445 B =13218.161231 C =14135.638086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.083 0.917 4 O -0.347 6.347 5 C 0.050 3.950 6 C 0.084 3.916 7 H 0.091 0.909 8 C -0.149 4.149 9 C -0.156 4.156 10 C 0.045 3.955 11 O -0.366 6.366 12 C 0.542 3.458 13 O -0.524 6.524 14 N -0.643 5.643 15 C 0.111 3.889 16 C -0.103 4.103 17 C 0.124 3.876 18 C -0.129 4.129 19 C 0.153 3.847 20 N -0.604 5.604 21 C -0.221 4.221 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.165 3.835 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.107 0.893 48 H 0.014 0.986 49 H 0.252 0.748 50 H 0.028 0.972 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 -2.196 23.814 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.101 0.899 4 O -0.265 6.265 5 C -0.027 4.027 6 C 0.026 3.974 7 H 0.109 0.891 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.031 4.031 11 O -0.285 6.285 12 C 0.330 3.670 13 O -0.399 6.399 14 N -0.380 5.380 15 C -0.013 4.013 16 C -0.104 4.104 17 C 0.002 3.998 18 C -0.168 4.168 19 C 0.028 3.972 20 N -0.330 5.330 21 C -0.349 4.349 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.570 5.570 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.039 3.961 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.125 0.875 48 H 0.032 0.968 49 H 0.062 0.938 50 H 0.046 0.954 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.619 -3.147 23.810 25.872 hybrid contribution 0.719 0.969 -0.135 1.214 sum -8.900 -2.179 23.676 25.387 Atomic orbital electron populations 1.22190 0.93564 1.03771 1.02894 1.21779 0.95089 0.96100 0.85441 0.89875 1.88100 1.86494 1.33511 1.18401 1.23048 0.99996 0.92951 0.86696 1.22754 0.91783 0.90538 0.92349 0.89094 1.23164 1.03015 0.98978 0.93507 1.23316 0.98425 0.99542 0.98054 1.23414 0.96471 1.00099 0.83145 1.88582 1.56866 1.54671 1.28348 1.19827 0.79951 0.84767 0.82474 1.90719 1.40364 1.23291 1.85521 1.49751 1.55960 1.27553 1.04720 1.23046 0.97097 0.88069 0.93048 1.22169 0.97700 0.95204 0.95321 1.22855 1.02111 0.96628 0.78174 1.22771 0.99672 1.00445 0.93891 1.21981 0.84251 0.97380 0.93581 1.44620 1.29243 1.59846 0.99338 1.19108 1.01319 1.23136 0.91363 0.90469 1.24785 0.99251 1.00992 0.95673 1.69800 1.37380 1.49218 1.00650 0.85996 0.81617 0.79473 0.78398 1.20557 1.21752 1.21740 1.20733 0.91541 0.94972 0.88873 0.90912 0.91122 0.91414 0.92753 0.92084 0.89408 0.90164 0.89743 0.90128 0.92333 0.89680 0.89435 0.90418 0.90111 0.89777 0.91806 0.91316 0.87534 0.96817 0.93761 0.95388 0.95746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.45 37.16 0.35 -1.32 16 2 C 0.08 0.98 2.97 -27.88 -0.08 0.90 16 3 H 0.08 0.89 7.79 -51.93 -0.40 0.48 16 4 O -0.35 -4.99 9.51 -58.82 -0.56 -5.55 16 5 C 0.05 0.51 5.28 37.16 0.20 0.71 16 6 C 0.08 0.82 3.81 -26.00 -0.10 0.72 16 7 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 8 C -0.15 -0.92 6.55 -24.64 -0.16 -1.08 16 9 C -0.16 -0.86 7.18 -24.34 -0.17 -1.03 16 10 C 0.05 0.34 7.77 38.18 0.30 0.63 16 11 O -0.37 -4.23 11.00 -37.80 -0.42 -4.65 16 12 C 0.54 8.92 7.43 -10.98 -0.08 8.84 16 13 O -0.52 -10.99 17.28 -14.30 -0.25 -11.24 16 14 N -0.64 -9.58 3.67 -185.47 -0.68 -10.26 16 15 C 0.11 1.36 6.50 -7.45 -0.05 1.31 16 16 C -0.10 -1.64 1.05 -155.11 -0.16 -1.80 16 17 C 0.12 1.95 7.89 -7.60 -0.06 1.89 16 18 C -0.13 -2.17 6.49 -25.20 -0.16 -2.33 16 19 C 0.15 3.52 5.90 -2.31 -0.01 3.51 16 20 N -0.60 -15.03 3.41 -170.38 -0.58 -15.61 16 21 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 23 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 24 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 25 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.16 3.33 6.78 -3.61 -0.02 3.30 16 30 H 0.07 0.63 6.80 -51.93 -0.35 0.28 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 33 H 0.05 0.47 7.87 -51.93 -0.41 0.07 16 34 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.41 7.85 -51.93 -0.41 0.00 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.08 1.43 8.06 -51.93 -0.42 1.02 16 44 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 45 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.11 2.78 5.89 -51.93 -0.31 2.47 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 51 H 0.02 0.53 7.92 -51.93 -0.41 0.12 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -34.76 404.52 -10.31 -45.08 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -8.98 Total: -2.51 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.48 Total: 7.59 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.70 Total: -51.66 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.22 Total: -21.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.76 -10.31 -45.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148880618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.738 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds