Wall clock time and date at job start Tue Mar 31 2020 21:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47128 * 2 1 4 4 O 1.42903 * 109.46614 * 119.99877 * 2 1 3 5 5 C 1.42890 * 113.99933 * 269.99720 * 4 2 1 6 6 C 1.53004 * 109.47071 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.82259 * 54.43338 * 6 5 4 8 8 C 1.54383 * 109.90564 * 175.37067 * 6 5 4 9 9 C 1.55566 * 102.27674 * 140.90940 * 8 6 5 10 10 C 1.54944 * 100.82489 * 325.88222 * 9 8 6 11 11 O 1.43235 * 109.82747 * 293.54363 * 6 5 4 12 12 C 1.50704 * 109.47010 * 239.99463 * 2 1 3 13 13 O 1.21276 * 120.00125 * 245.00025 * 12 2 1 14 14 N 1.34780 * 119.99537 * 65.00794 * 12 2 1 15 15 C 1.47358 * 135.88124 * 359.62317 * 14 12 2 16 16 C 1.52258 * 87.47007 * 154.22728 * 15 14 12 17 17 C 1.47349 * 135.87413 * 179.97438 * 14 12 2 18 18 C 1.53722 * 116.39330 * 142.36890 * 16 15 14 19 19 C 1.55176 * 101.38544 * 165.09660 * 18 16 15 20 20 N 1.47555 * 105.03386 * 324.50868 * 19 18 16 21 21 C 1.36942 * 125.66203 * 203.91674 * 20 19 18 22 22 H 1.07989 * 120.00207 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99784 * 359.97438 * 21 20 19 24 24 N 1.31622 * 119.99823 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00044 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47053 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47107 * 119.99986 * 25 23 21 28 28 H 1.48498 * 109.47138 * 240.00077 * 25 23 21 29 29 C 1.47406 * 108.68094 * 23.89565 * 20 19 18 30 30 H 1.08999 * 109.46850 * 60.00114 * 1 2 3 31 31 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.46966 * 300.00306 * 1 2 3 33 33 H 1.08996 * 109.47105 * 60.00557 * 5 4 2 34 34 H 1.08998 * 109.47497 * 300.00279 * 5 4 2 35 35 H 1.09007 * 110.84628 * 259.10369 * 8 6 5 36 36 H 1.09000 * 110.84920 * 22.71783 * 8 6 5 37 37 H 1.08997 * 111.22347 * 207.97660 * 9 8 6 38 38 H 1.09003 * 111.13190 * 83.74257 * 9 8 6 39 39 H 1.09002 * 110.30953 * 277.47426 * 10 9 8 40 40 H 1.09000 * 110.30834 * 155.40499 * 10 9 8 41 41 H 1.09005 * 113.53105 * 268.85413 * 15 14 12 42 42 H 1.08992 * 113.52799 * 39.49904 * 15 14 12 43 43 H 1.09003 * 113.53563 * 320.49627 * 17 14 12 44 44 H 1.09002 * 113.53483 * 91.14971 * 17 14 12 45 45 H 1.09001 * 111.04231 * 283.12319 * 18 16 15 46 46 H 1.09006 * 111.03659 * 47.06744 * 18 16 15 47 47 H 1.08998 * 110.33101 * 205.62096 * 19 18 16 48 48 H 1.09002 * 110.42024 * 83.44407 * 19 18 16 49 49 H 0.96996 * 119.99671 * 179.97438 * 24 23 21 50 50 H 1.08994 * 109.99105 * 238.51876 * 29 20 19 51 51 H 1.09001 * 110.02550 * 117.21445 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2940 6 6 2.7089 -0.6406 3.4789 7 1 3.6025 -1.1930 3.1884 8 6 3.0321 0.2913 4.6665 9 6 2.5307 -0.5379 5.8836 10 6 1.3079 -1.2577 5.2613 11 8 1.6919 -1.5530 3.9090 12 6 2.0324 -0.7105 -1.2304 13 8 2.6530 -1.7468 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 1.0972 0.9928 -2.9808 16 6 2.0071 0.8997 -4.1980 17 6 2.1042 -0.5742 -3.8410 18 6 1.3690 1.2366 -5.5554 19 6 2.6255 1.4189 -6.4476 20 7 3.6346 2.0368 -5.5660 21 6 4.7012 2.7901 -5.9785 22 1 5.3860 3.2003 -5.2513 23 6 4.9021 3.0263 -7.3316 24 7 4.0677 2.5259 -8.2180 25 14 6.3575 4.0532 -7.8945 26 1 7.1393 4.4940 -6.7114 27 1 7.2237 3.2385 -8.7840 28 1 5.8668 5.2429 -8.6355 29 6 3.3037 1.7091 -4.1674 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.2538 0.6546 2.5588 34 1 2.9319 0.9513 2.0450 35 1 4.1047 0.4728 4.7364 36 1 2.4834 1.2294 4.5840 37 1 2.2283 0.1110 6.7055 38 1 3.2850 -1.2545 6.2084 39 1 0.4369 -0.6025 5.2727 40 1 1.0947 -2.1788 5.8037 41 1 0.0459 0.8162 -3.2086 42 1 1.2557 1.8913 -2.3846 43 1 3.1055 -0.9868 -3.9648 44 1 1.3333 -1.1869 -4.3084 45 1 0.7515 0.4126 -5.9129 46 1 0.7922 2.1597 -5.4983 47 1 2.4017 2.0776 -7.2868 48 1 2.9788 0.4531 -6.8089 49 1 4.2079 2.6913 -9.1634 50 1 3.1580 2.6248 -3.5946 51 1 4.1032 1.1156 -3.7240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148880618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:05 Heat of formation + Delta-G solvation = -77.841113 kcal Electronic energy + Delta-G solvation = -29926.198885 eV Core-core repulsion = 25827.172661 eV Total energy + Delta-G solvation = -4099.026224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00041 -40.64639 -39.93169 -38.31550 -37.29542 -34.21098 -33.32487 -32.95832 -31.47509 -30.94380 -29.66079 -27.71537 -27.17846 -26.62703 -25.65353 -24.27276 -22.61672 -22.21826 -22.16212 -20.55263 -19.58063 -18.82932 -18.41467 -18.08348 -17.77748 -17.03888 -16.85322 -16.72856 -16.59051 -16.11971 -15.95530 -15.59111 -15.40309 -14.95686 -14.61398 -14.30325 -14.24188 -14.08599 -13.80144 -13.71929 -13.46501 -13.37191 -13.16371 -13.05410 -12.87553 -12.76157 -12.66338 -12.56664 -12.38427 -12.20307 -12.10473 -11.99035 -11.93198 -11.77190 -11.72515 -11.51347 -11.19998 -10.96188 -10.73480 -10.49893 -10.47837 -9.78121 -8.87743 -7.76898 -5.20760 1.46512 1.47308 1.47653 1.55226 1.57521 2.49035 2.61874 2.94241 3.23299 3.32572 3.41093 3.54205 3.65888 3.71136 3.81201 3.92578 3.94010 3.99975 4.15290 4.16225 4.17072 4.24708 4.35913 4.38078 4.41816 4.55219 4.59806 4.62102 4.67562 4.69250 4.76117 4.80009 4.82062 4.83207 4.88975 4.93694 4.97209 5.02791 5.11720 5.15232 5.18219 5.23733 5.24165 5.47469 5.70183 5.85759 6.00126 6.19056 6.34033 6.66990 7.05742 7.12665 7.79102 8.42395 9.24631 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.002118 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.387445 B =13218.161231 C =14135.638086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.080 3.920 3 H 0.109 0.891 4 O -0.385 6.385 5 C 0.046 3.954 6 C 0.075 3.925 7 H 0.067 0.933 8 C -0.141 4.141 9 C -0.149 4.149 10 C 0.036 3.964 11 O -0.402 6.402 12 C 0.533 3.467 13 O -0.585 6.585 14 N -0.642 5.642 15 C 0.128 3.872 16 C -0.099 4.099 17 C 0.118 3.882 18 C -0.106 4.106 19 C 0.151 3.849 20 N -0.626 5.626 21 C -0.237 4.237 22 H 0.076 0.924 23 C -0.066 4.066 24 N -0.946 5.946 25 Si 0.978 3.022 26 H -0.269 1.269 27 H -0.296 1.296 28 H -0.287 1.287 29 C 0.162 3.838 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.046 0.954 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.074 0.926 48 H -0.018 1.018 49 H 0.247 0.753 50 H 0.041 0.959 51 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.208 -0.133 25.934 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.127 0.873 4 O -0.304 6.304 5 C -0.030 4.030 6 C 0.017 3.983 7 H 0.085 0.915 8 C -0.179 4.179 9 C -0.187 4.187 10 C -0.040 4.040 11 O -0.322 6.322 12 C 0.323 3.677 13 O -0.465 6.465 14 N -0.377 5.377 15 C 0.006 3.994 16 C -0.100 4.100 17 C -0.004 4.004 18 C -0.145 4.145 19 C 0.026 3.974 20 N -0.353 5.353 21 C -0.366 4.366 22 H 0.094 0.906 23 C -0.259 4.259 24 N -0.596 5.596 25 Si 0.806 3.194 26 H -0.194 1.194 27 H -0.223 1.223 28 H -0.214 1.214 29 C 0.037 3.963 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.129 0.871 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.000 1.000 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -11.781 -1.051 25.956 28.523 hybrid contribution 1.446 0.272 -0.798 1.674 sum -10.335 -0.779 25.158 27.209 Atomic orbital electron populations 1.22173 0.91149 1.03251 1.05009 1.21901 0.96708 0.96178 0.83262 0.87340 1.88072 1.86956 1.35692 1.19709 1.23273 1.01393 0.92853 0.85507 1.22855 0.90690 0.90928 0.93784 0.91520 1.23169 1.03946 0.98831 0.91921 1.23318 0.97438 0.99583 0.98328 1.23642 0.97707 1.00936 0.81738 1.88540 1.57345 1.55830 1.30495 1.20692 0.78950 0.84291 0.83770 1.90684 1.43184 1.26161 1.86441 1.49803 1.55651 1.28198 1.04052 1.23217 0.97921 0.87877 0.90342 1.21960 0.96462 0.94665 0.96910 1.22933 1.01291 0.96783 0.79440 1.22587 0.96953 1.02558 0.92369 1.21820 0.86803 0.94698 0.94090 1.44936 1.29159 1.59524 1.01653 1.19434 1.02268 1.23239 0.91690 0.90581 1.25590 1.01901 1.02513 0.95882 1.70050 1.38726 1.50334 1.00459 0.85019 0.78637 0.77798 0.77920 1.19387 1.22290 1.21389 1.20845 0.93190 0.95770 0.86500 0.88766 0.92967 0.89228 0.90856 0.90610 0.88435 0.88459 0.87351 0.90319 0.91190 0.89290 0.85206 0.87900 0.93564 0.87134 0.88713 0.89552 0.90770 1.00036 0.94321 0.94099 0.98023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.45 71.98 0.68 -1.97 16 2 C 0.08 1.88 2.97 29.85 0.09 1.97 16 3 H 0.11 1.93 7.79 -2.39 -0.02 1.91 16 4 O -0.39 -10.89 9.51 -126.43 -1.20 -12.09 16 5 C 0.05 0.87 5.28 71.98 0.38 1.25 16 6 C 0.08 1.44 3.81 31.06 0.12 1.56 16 7 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 8 C -0.14 -1.46 6.55 31.95 0.21 -1.25 16 9 C -0.15 -1.34 7.18 32.14 0.23 -1.11 16 10 C 0.04 0.48 7.77 72.65 0.56 1.05 16 11 O -0.40 -9.28 11.00 -146.52 -1.61 -10.89 16 12 C 0.53 17.17 7.43 87.66 0.65 17.82 16 13 O -0.59 -25.44 17.28 15.97 0.28 -25.16 16 14 N -0.64 -17.81 3.67 -859.09 -3.15 -20.96 16 15 C 0.13 2.55 6.50 83.71 0.54 3.09 16 16 C -0.10 -2.93 1.05 -52.56 -0.05 -2.99 16 17 C 0.12 3.58 7.89 83.61 0.66 4.24 16 18 C -0.11 -3.30 6.49 31.58 0.21 -3.09 16 19 C 0.15 7.06 5.90 86.92 0.51 7.58 16 20 N -0.63 -31.68 3.41 -692.95 -2.36 -34.04 16 21 C -0.24 -13.28 10.28 84.03 0.86 -12.41 16 22 H 0.08 4.14 7.83 -2.92 -0.02 4.11 16 23 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 24 N -0.95 -55.67 10.09 21.65 0.22 -55.45 16 25 Si 0.98 45.64 29.55 68.60 2.03 47.66 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 29 C 0.16 6.48 6.78 86.17 0.58 7.06 16 30 H 0.09 1.14 6.80 -2.39 -0.02 1.13 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.12 7.87 -2.39 -0.02 1.10 16 33 H 0.07 1.07 7.87 -2.39 -0.02 1.05 16 34 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 35 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.10 0.68 7.85 -2.39 -0.02 0.66 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 43 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 44 H 0.11 2.79 8.04 -2.39 -0.02 2.77 16 45 H 0.09 2.40 7.98 -2.39 -0.02 2.38 16 46 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 47 H 0.07 3.98 5.89 -2.39 -0.01 3.96 16 48 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 50 H 0.04 1.53 8.07 -2.39 -0.02 1.52 16 51 H 0.00 0.08 7.92 -2.39 -0.02 0.06 16 Total: -1.00 -82.28 404.52 1.79 -80.50 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.89 Total: 10.93 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 6.70 Total: 19.52 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -5.30 Total: -110.46 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -2.54 Total: -48.14 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -82.28 1.79 -80.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148880618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.656 kcal (2) G-P(sol) polarization free energy of solvation -82.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds