Wall clock time and date at job start Tue Mar 31 2020 21:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42891 * 109.47517 * 42.10515 * 3 2 1 5 5 C 1.42903 * 114.00200 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47193 * 29.99388 * 5 4 3 7 7 C 1.53009 * 109.46898 * 270.00066 * 5 4 3 8 8 C 1.50695 * 109.47310 * 150.00454 * 5 4 3 9 9 O 1.21281 * 120.00358 * 4.99046 * 8 5 4 10 10 N 1.34780 * 120.00106 * 185.00535 * 8 5 4 11 11 C 1.46494 * 120.00095 * 184.78244 * 10 8 5 12 12 C 1.53005 * 109.46336 * 58.11660 * 11 10 8 13 13 C 1.52997 * 109.47194 * 57.80511 * 12 11 10 14 14 O 1.42900 * 109.47278 * 183.69752 * 13 12 11 15 15 C 1.42904 * 114.00005 * 180.02562 * 14 13 12 16 16 C 1.53041 * 109.45913 * 298.14614 * 11 10 8 17 17 C 1.53192 * 109.31036 * 301.34410 * 16 11 10 18 18 N 1.46927 * 108.77554 * 305.36557 * 17 16 11 19 19 C 1.36935 * 120.63259 * 233.58464 * 18 17 16 20 20 H 1.08003 * 120.00297 * 148.45995 * 19 18 17 21 21 C 1.38813 * 119.99800 * 328.73941 * 19 18 17 22 22 N 1.31624 * 119.99987 * 164.83777 * 21 19 18 23 23 Si 1.86798 * 120.00131 * 344.83265 * 21 19 18 24 24 H 1.48503 * 109.46820 * 87.69117 * 23 21 19 25 25 H 1.48503 * 109.47353 * 207.69061 * 23 21 19 26 26 H 1.48499 * 109.47060 * 327.69236 * 23 21 19 27 27 C 1.46922 * 118.74010 * 53.85914 * 18 17 16 28 28 C 1.53042 * 109.46157 * 178.07515 * 11 10 8 29 29 H 4.38443 * 5.44392 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47124 * 282.09800 * 3 2 1 31 31 H 1.09007 * 109.46854 * 162.10577 * 3 2 1 32 32 H 1.09004 * 109.46738 * 299.99560 * 7 5 4 33 33 H 1.08999 * 109.47357 * 59.99710 * 7 5 4 34 34 H 1.08999 * 109.46922 * 180.02562 * 7 5 4 35 35 H 0.97001 * 120.00107 * 4.76879 * 10 8 5 36 36 H 1.09000 * 109.47327 * 177.81093 * 12 11 10 37 37 H 1.08998 * 109.46774 * 297.80716 * 12 11 10 38 38 H 1.08992 * 109.47226 * 303.70434 * 13 12 11 39 39 H 1.09006 * 109.46827 * 63.69597 * 13 12 11 40 40 H 1.09003 * 109.46766 * 60.00070 * 15 14 13 41 41 H 1.08991 * 109.46591 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.46725 * 300.00445 * 15 14 13 43 43 H 1.09000 * 109.49898 * 181.39657 * 16 11 10 44 44 H 1.08993 * 109.50356 * 61.29585 * 16 11 10 45 45 H 1.08998 * 109.59063 * 185.57840 * 17 16 11 46 46 H 1.08994 * 109.58874 * 65.15350 * 17 16 11 47 47 H 0.96998 * 119.99675 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.58491 * 65.92757 * 27 18 17 49 49 H 1.09000 * 109.59118 * 186.35072 * 27 18 17 50 50 H 1.08999 * 109.49864 * 178.60670 * 28 11 10 51 51 H 1.08998 * 109.49864 * 298.70054 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -0.9986 -0.9033 5 6 4.5475 -1.0820 -0.9784 6 1 4.9796 -0.7896 -0.0215 7 6 5.0561 -0.1444 -2.0754 8 6 4.9515 -2.4976 -1.3006 9 8 4.1033 -3.3308 -1.5402 10 7 6.2554 -2.8380 -1.3222 11 6 6.6540 -4.1852 -1.7370 12 6 6.1415 -4.4551 -3.1532 13 6 6.6953 -3.3945 -4.1068 14 8 6.1487 -3.5953 -5.4118 15 6 6.6046 -2.6526 -6.3842 16 6 6.0559 -5.2132 -0.7739 17 6 6.5440 -4.9191 0.6481 18 7 8.0127 -4.8782 0.6449 19 6 8.7342 -5.6535 1.5130 20 1 9.7054 -6.0273 1.2240 21 6 8.2147 -5.9640 2.7623 22 7 8.7488 -6.9333 3.4748 23 14 6.7577 -5.0060 3.4323 24 1 5.4955 -5.6380 2.9711 25 1 6.8012 -5.0128 4.9167 26 1 6.8183 -3.6057 2.9418 27 6 8.6926 -3.9852 -0.3032 28 6 8.1805 -4.2938 -1.7183 29 1 -1.0498 -0.0004 -0.0001 30 1 3.0095 -0.2146 1.0049 31 1 3.0089 0.9789 -0.3158 32 1 4.6239 -0.4369 -3.0325 33 1 4.7638 0.8795 -1.8425 34 1 6.1426 -0.2084 -2.1331 35 1 6.9300 -2.1908 -1.0632 36 1 6.4711 -5.4424 -3.4769 37 1 5.0523 -4.4158 -3.1590 38 1 6.4209 -2.4032 -3.7464 39 1 7.7813 -3.4772 -4.1510 40 1 7.6886 -2.7203 -6.4756 41 1 6.1446 -2.8731 -7.3474 42 1 6.3286 -1.6456 -6.0712 43 1 6.3724 -6.2140 -1.0674 44 1 4.9681 -5.1513 -0.8051 45 1 6.2018 -5.7046 1.3218 46 1 6.1525 -3.9566 0.9771 47 1 8.3860 -7.1499 4.3479 48 1 8.4726 -2.9480 -0.0501 49 1 9.7684 -4.1543 -0.2574 50 1 8.4769 -5.3033 -2.0030 51 1 8.6049 -3.5776 -2.4218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151127952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:19 Heat of formation + Delta-G solvation = -38.881882 kcal Electronic energy + Delta-G solvation = -31684.979840 eV Core-core repulsion = 27587.643015 eV Total energy + Delta-G solvation = -4097.336825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.66431 -38.79977 -37.74311 -37.18973 -34.76198 -33.73813 -32.61390 -31.71644 -30.88056 -30.46622 -29.26132 -27.35426 -26.65427 -24.96473 -24.29321 -23.48173 -22.19361 -21.14227 -20.46852 -19.04788 -18.80834 -17.43692 -17.03543 -16.84195 -16.43345 -16.09143 -15.85295 -15.38040 -15.13988 -15.06679 -14.71352 -14.44656 -14.08531 -13.80205 -13.65254 -13.53708 -13.34626 -13.09486 -12.88409 -12.64877 -12.49410 -12.29321 -12.05056 -11.80894 -11.67359 -11.64644 -11.38748 -11.17491 -11.12828 -10.91956 -10.83981 -10.76959 -10.51632 -10.26487 -10.04232 -9.90516 -9.77937 -9.61324 -9.50797 -9.13193 -8.88040 -8.57605 -6.93610 -5.96080 -3.38288 2.16826 2.57537 2.72547 3.09116 3.32948 3.44690 3.47564 3.70547 3.80356 4.30511 4.50714 4.54521 4.66650 4.79539 4.89718 4.91000 4.99652 5.07044 5.11731 5.14879 5.17500 5.24128 5.28251 5.29476 5.37306 5.40126 5.45074 5.48911 5.60862 5.65909 5.77260 5.79708 5.93915 6.03113 6.05885 6.12927 6.30135 6.40202 6.49116 6.51929 6.60599 6.68446 6.76567 6.80942 6.94950 7.13025 7.33571 7.66839 7.98473 8.32586 8.37806 8.92159 9.69776 10.08534 11.20015 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.004833 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.260499 B = 5791.803098 C = 8547.744564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.190 4.190 3 C 0.169 3.831 4 O -0.349 6.349 5 C 0.068 3.932 6 H 0.088 0.912 7 C -0.169 4.169 8 C 0.516 3.484 9 O -0.509 6.509 10 N -0.715 5.715 11 C 0.196 3.804 12 C -0.130 4.130 13 C 0.066 3.934 14 O -0.392 6.392 15 C 0.033 3.967 16 C -0.143 4.143 17 C 0.130 3.870 18 N -0.605 5.605 19 C -0.262 4.262 20 H 0.084 0.916 21 C 0.026 3.974 22 N -0.912 5.912 23 Si 0.891 3.109 24 H -0.287 1.287 25 H -0.305 1.305 26 H -0.274 1.274 27 C 0.150 3.850 28 C -0.141 4.141 29 H 0.222 0.778 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.022 0.978 47 H 0.263 0.737 48 H 0.018 0.982 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 16.851 -13.888 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.191 4.191 3 C 0.093 3.907 4 O -0.267 6.267 5 C 0.007 3.993 6 H 0.106 0.894 7 C -0.227 4.227 8 C 0.300 3.700 9 O -0.383 6.383 10 N -0.369 5.369 11 C 0.110 3.890 12 C -0.168 4.168 13 C -0.010 4.010 14 O -0.311 6.311 15 C -0.064 4.064 16 C -0.183 4.183 17 C 0.005 3.995 18 N -0.329 5.329 19 C -0.390 4.390 20 H 0.102 0.898 21 C -0.173 4.173 22 N -0.555 5.555 23 Si 0.723 3.277 24 H -0.214 1.214 25 H -0.233 1.233 26 H -0.199 1.199 27 C 0.023 3.977 28 C -0.181 4.181 29 H 0.239 0.761 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.040 0.960 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.399 15.867 -14.050 22.448 hybrid contribution -0.323 1.233 0.831 1.521 sum -7.722 17.100 -13.219 22.952 Atomic orbital electron populations 1.24952 0.95872 0.98955 0.99286 1.22427 0.93791 1.01479 1.01353 1.19187 0.85095 0.92314 0.94092 1.88122 1.18969 1.56479 1.63168 1.21967 0.82864 0.94205 1.00308 0.89379 1.22235 1.01722 0.99316 0.99401 1.20126 0.82916 0.89187 0.77767 1.90677 1.50185 1.50725 1.46757 1.46086 1.06804 1.15106 1.68901 1.20204 0.94819 0.81552 0.92382 1.21951 1.03702 0.98751 0.92424 1.22580 0.96917 0.98934 0.82587 1.87897 1.69891 1.54100 1.19191 1.22694 0.98754 0.92384 0.92564 1.22410 1.01290 0.98030 0.96583 1.21307 0.84717 0.98811 0.94694 1.44346 1.00312 1.47121 1.41164 1.18901 1.03093 1.23840 0.93166 0.89802 1.25358 0.98101 0.97768 0.96073 1.69782 1.43035 1.29355 1.13301 0.86880 0.82714 0.81338 0.76813 1.21443 1.23316 1.19933 1.20979 0.96873 0.92316 0.87490 1.22487 0.92814 1.02983 0.99790 0.76127 0.90547 0.90693 0.91041 0.91238 0.90766 0.76682 0.90418 0.89089 0.93641 0.93293 0.94248 0.89915 0.94406 0.90962 0.90349 0.91016 0.96004 0.92720 0.96393 0.91488 0.89927 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 19.25 29.55 0.57 -1.20 16 2 C -0.19 -2.26 13.73 -37.12 -0.51 -2.77 16 3 C 0.17 1.79 6.22 34.37 0.21 2.00 16 4 O -0.35 -4.81 9.48 -55.09 -0.52 -5.33 16 5 C 0.07 0.78 3.13 -27.88 -0.09 0.69 16 6 H 0.09 0.83 7.79 -51.93 -0.40 0.43 16 7 C -0.17 -1.40 9.48 37.16 0.35 -1.05 16 8 C 0.52 7.64 6.49 -10.99 -0.07 7.57 16 9 O -0.51 -9.63 12.77 -14.30 -0.18 -9.81 16 10 N -0.71 -9.55 3.17 -47.57 -0.15 -9.70 16 11 C 0.20 2.93 0.35 -131.78 -0.05 2.88 16 12 C -0.13 -1.88 4.36 -26.73 -0.12 -1.99 16 13 C 0.07 0.82 5.41 37.16 0.20 1.02 16 14 O -0.39 -5.24 10.70 -35.23 -0.38 -5.62 16 15 C 0.03 0.31 11.01 101.05 1.11 1.42 16 16 C -0.14 -2.68 4.69 -26.61 -0.12 -2.81 16 17 C 0.13 2.84 3.91 -3.71 -0.01 2.83 16 18 N -0.61 -13.66 2.73 -172.06 -0.47 -14.13 16 19 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 20 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 21 C 0.03 0.75 5.30 -17.43 -0.09 0.66 16 22 N -0.91 -27.86 13.97 55.49 0.78 -27.09 16 23 Si 0.89 22.70 24.27 -169.99 -4.13 18.58 16 24 H -0.29 -7.25 6.47 56.52 0.37 -6.89 16 25 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 26 H -0.27 -6.74 6.67 56.52 0.38 -6.37 16 27 C 0.15 2.61 6.26 -3.49 -0.02 2.58 16 28 C -0.14 -2.01 4.71 -26.39 -0.12 -2.14 16 29 H 0.22 1.37 7.80 -54.10 -0.42 0.95 16 30 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.08 0.57 7.87 -51.92 -0.41 0.16 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.40 4.38 7.16 -40.82 -0.29 4.09 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.55 6.26 -51.93 -0.33 1.22 16 38 H 0.05 0.53 7.34 -51.93 -0.38 0.15 16 39 H 0.05 0.54 6.64 -51.93 -0.35 0.20 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.08 1.55 6.18 -51.93 -0.32 1.23 16 45 H 0.07 1.78 4.51 -51.93 -0.23 1.54 16 46 H 0.02 0.48 6.58 -51.93 -0.34 0.14 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.02 0.29 6.90 -51.93 -0.36 -0.07 16 49 H 0.07 1.18 7.93 -51.93 -0.41 0.76 16 50 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 51 H 0.06 0.69 6.50 -51.93 -0.34 0.35 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -35.37 398.58 -6.37 -41.74 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.41 Total: 2.93 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 1.09 Total: 2.42 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.15 Total: -50.92 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.08 Total: -20.76 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.13 Total: 18.58 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.37 -6.37 -41.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151127952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.861 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds