Wall clock time and date at job start Tue Mar 31 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42891 * 109.47517 * 42.10515 * 3 2 1 5 5 C 1.42903 * 114.00200 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47193 * 29.99388 * 5 4 3 7 7 C 1.53009 * 109.46898 * 270.00066 * 5 4 3 8 8 C 1.50695 * 109.47310 * 150.00454 * 5 4 3 9 9 O 1.21281 * 120.00358 * 4.99046 * 8 5 4 10 10 N 1.34780 * 120.00106 * 185.00535 * 8 5 4 11 11 C 1.46494 * 120.00095 * 184.78244 * 10 8 5 12 12 C 1.53005 * 109.46336 * 58.11660 * 11 10 8 13 13 C 1.52997 * 109.47194 * 57.80511 * 12 11 10 14 14 O 1.42900 * 109.47278 * 183.69752 * 13 12 11 15 15 C 1.42904 * 114.00005 * 180.02562 * 14 13 12 16 16 C 1.53041 * 109.45913 * 298.14614 * 11 10 8 17 17 C 1.53192 * 109.31036 * 301.34410 * 16 11 10 18 18 N 1.46927 * 108.77554 * 305.36557 * 17 16 11 19 19 C 1.36935 * 120.63259 * 233.58464 * 18 17 16 20 20 H 1.08003 * 120.00297 * 148.45995 * 19 18 17 21 21 C 1.38813 * 119.99800 * 328.73941 * 19 18 17 22 22 N 1.31624 * 119.99987 * 164.83777 * 21 19 18 23 23 Si 1.86798 * 120.00131 * 344.83265 * 21 19 18 24 24 H 1.48503 * 109.46820 * 87.69117 * 23 21 19 25 25 H 1.48503 * 109.47353 * 207.69061 * 23 21 19 26 26 H 1.48499 * 109.47060 * 327.69236 * 23 21 19 27 27 C 1.46922 * 118.74010 * 53.85914 * 18 17 16 28 28 C 1.53042 * 109.46157 * 178.07515 * 11 10 8 29 29 H 4.38443 * 5.44392 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47124 * 282.09800 * 3 2 1 31 31 H 1.09007 * 109.46854 * 162.10577 * 3 2 1 32 32 H 1.09004 * 109.46738 * 299.99560 * 7 5 4 33 33 H 1.08999 * 109.47357 * 59.99710 * 7 5 4 34 34 H 1.08999 * 109.46922 * 180.02562 * 7 5 4 35 35 H 0.97001 * 120.00107 * 4.76879 * 10 8 5 36 36 H 1.09000 * 109.47327 * 177.81093 * 12 11 10 37 37 H 1.08998 * 109.46774 * 297.80716 * 12 11 10 38 38 H 1.08992 * 109.47226 * 303.70434 * 13 12 11 39 39 H 1.09006 * 109.46827 * 63.69597 * 13 12 11 40 40 H 1.09003 * 109.46766 * 60.00070 * 15 14 13 41 41 H 1.08991 * 109.46591 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.46725 * 300.00445 * 15 14 13 43 43 H 1.09000 * 109.49898 * 181.39657 * 16 11 10 44 44 H 1.08993 * 109.50356 * 61.29585 * 16 11 10 45 45 H 1.08998 * 109.59063 * 185.57840 * 17 16 11 46 46 H 1.08994 * 109.58874 * 65.15350 * 17 16 11 47 47 H 0.96998 * 119.99675 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.58491 * 65.92757 * 27 18 17 49 49 H 1.09000 * 109.59118 * 186.35072 * 27 18 17 50 50 H 1.08999 * 109.49864 * 178.60670 * 28 11 10 51 51 H 1.08998 * 109.49864 * 298.70054 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -0.9986 -0.9033 5 6 4.5475 -1.0820 -0.9784 6 1 4.9796 -0.7896 -0.0215 7 6 5.0561 -0.1444 -2.0754 8 6 4.9515 -2.4976 -1.3006 9 8 4.1033 -3.3308 -1.5402 10 7 6.2554 -2.8380 -1.3222 11 6 6.6540 -4.1852 -1.7370 12 6 6.1415 -4.4551 -3.1532 13 6 6.6953 -3.3945 -4.1068 14 8 6.1487 -3.5953 -5.4118 15 6 6.6046 -2.6526 -6.3842 16 6 6.0559 -5.2132 -0.7739 17 6 6.5440 -4.9191 0.6481 18 7 8.0127 -4.8782 0.6449 19 6 8.7342 -5.6535 1.5130 20 1 9.7054 -6.0273 1.2240 21 6 8.2147 -5.9640 2.7623 22 7 8.7488 -6.9333 3.4748 23 14 6.7577 -5.0060 3.4323 24 1 5.4955 -5.6380 2.9711 25 1 6.8012 -5.0128 4.9167 26 1 6.8183 -3.6057 2.9418 27 6 8.6926 -3.9852 -0.3032 28 6 8.1805 -4.2938 -1.7183 29 1 -1.0498 -0.0004 -0.0001 30 1 3.0095 -0.2146 1.0049 31 1 3.0089 0.9789 -0.3158 32 1 4.6239 -0.4369 -3.0325 33 1 4.7638 0.8795 -1.8425 34 1 6.1426 -0.2084 -2.1331 35 1 6.9300 -2.1908 -1.0632 36 1 6.4711 -5.4424 -3.4769 37 1 5.0523 -4.4158 -3.1590 38 1 6.4209 -2.4032 -3.7464 39 1 7.7813 -3.4772 -4.1510 40 1 7.6886 -2.7203 -6.4756 41 1 6.1446 -2.8731 -7.3474 42 1 6.3286 -1.6456 -6.0712 43 1 6.3724 -6.2140 -1.0674 44 1 4.9681 -5.1513 -0.8051 45 1 6.2018 -5.7046 1.3218 46 1 6.1525 -3.9566 0.9771 47 1 8.3860 -7.1499 4.3479 48 1 8.4726 -2.9480 -0.0501 49 1 9.7684 -4.1543 -0.2574 50 1 8.4769 -5.3033 -2.0030 51 1 8.6049 -3.5776 -2.4218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151127952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:18 Heat of formation + Delta-G solvation = -63.811371 kcal Electronic energy + Delta-G solvation = -31686.060864 eV Core-core repulsion = 27587.643015 eV Total energy + Delta-G solvation = -4098.417849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85528 -39.83974 -38.68225 -38.45366 -36.31776 -34.57771 -33.93240 -33.39893 -32.08765 -31.64067 -30.67611 -28.10215 -27.67273 -26.31347 -25.29241 -24.98550 -23.66676 -22.43308 -21.71943 -20.30290 -19.66961 -18.94901 -18.19265 -17.86694 -17.55119 -17.12108 -17.01711 -16.69027 -16.34458 -16.05149 -15.94259 -15.71928 -15.44801 -15.17749 -15.08917 -14.71443 -14.37413 -14.24297 -14.05521 -13.85045 -13.72443 -13.46618 -13.39183 -13.15884 -12.96349 -12.72561 -12.53764 -12.44920 -12.30828 -12.17693 -12.07840 -11.96588 -11.73481 -11.63119 -11.57925 -11.41928 -11.29928 -10.78535 -10.76480 -10.53317 -10.27009 -10.01996 -8.84991 -8.17169 -5.53501 1.29020 1.33935 1.34130 1.43725 1.63053 1.78320 2.09923 2.39166 2.81768 3.01285 3.08002 3.34753 3.52258 3.64034 3.78065 3.87262 3.94154 4.03839 4.07516 4.18820 4.22002 4.28096 4.30930 4.42569 4.45912 4.52554 4.56272 4.59074 4.65044 4.69342 4.71099 4.79676 4.85150 4.88432 4.98107 4.98787 4.99169 5.05396 5.12449 5.18797 5.20734 5.24905 5.39486 5.62958 5.90465 5.98622 6.15282 6.29478 6.56274 6.63555 6.93115 7.30810 7.62158 8.04776 9.02883 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.004833 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.260499 B = 5791.803098 C = 8547.744564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.385 6.385 5 C 0.068 3.932 6 H 0.113 0.887 7 C -0.161 4.161 8 C 0.509 3.491 9 O -0.558 6.558 10 N -0.704 5.704 11 C 0.204 3.796 12 C -0.122 4.122 13 C 0.072 3.928 14 O -0.422 6.422 15 C 0.026 3.974 16 C -0.137 4.137 17 C 0.134 3.866 18 N -0.617 5.617 19 C -0.241 4.241 20 H 0.058 0.942 21 C -0.032 4.032 22 N -0.960 5.960 23 Si 0.946 3.054 24 H -0.292 1.292 25 H -0.312 1.312 26 H -0.254 1.254 27 C 0.142 3.858 28 C -0.128 4.128 29 H 0.253 0.747 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.027 0.973 47 H 0.260 0.740 48 H 0.049 0.951 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 20.475 -15.673 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.239 4.239 3 C 0.088 3.912 4 O -0.304 6.304 5 C 0.007 3.993 6 H 0.131 0.869 7 C -0.219 4.219 8 C 0.296 3.704 9 O -0.435 6.435 10 N -0.359 5.359 11 C 0.118 3.882 12 C -0.161 4.161 13 C -0.004 4.004 14 O -0.342 6.342 15 C -0.070 4.070 16 C -0.177 4.177 17 C 0.009 3.991 18 N -0.342 5.342 19 C -0.371 4.371 20 H 0.075 0.925 21 C -0.226 4.226 22 N -0.607 5.607 23 Si 0.777 3.223 24 H -0.220 1.220 25 H -0.241 1.241 26 H -0.178 1.178 27 C 0.018 3.982 28 C -0.167 4.167 29 H 0.269 0.731 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.044 19.567 -15.879 26.165 hybrid contribution -0.459 0.066 1.280 1.361 sum -7.503 19.633 -14.599 25.590 Atomic orbital electron populations 1.25867 0.96917 0.97582 0.97889 1.23156 0.95092 1.02861 1.02746 1.19441 0.84641 0.93012 0.94068 1.88071 1.20322 1.57930 1.64095 1.22125 0.82302 0.92252 1.02634 0.86947 1.22231 1.02981 0.99478 0.97199 1.20878 0.82635 0.90376 0.76547 1.90666 1.51523 1.52470 1.48889 1.45954 1.07042 1.14533 1.68387 1.19970 0.95112 0.81420 0.91695 1.21783 1.01884 0.99700 0.92723 1.22519 0.97724 0.98205 0.81996 1.87853 1.70752 1.55652 1.19968 1.22908 0.99840 0.92176 0.92046 1.22275 1.00549 0.99016 0.95842 1.21173 0.84416 0.97714 0.95785 1.44457 1.00489 1.47902 1.41312 1.18892 1.01990 1.22846 0.93351 0.92454 1.25935 1.00943 0.98896 0.96858 1.69911 1.45405 1.31518 1.13859 0.85968 0.79767 0.81001 0.75571 1.22005 1.24107 1.17827 1.21270 0.96590 0.92660 0.87667 1.22376 0.91807 1.03862 0.98655 0.73107 0.89859 0.87672 0.92693 0.88992 0.88338 0.74799 0.90891 0.92008 0.92590 0.91197 0.92693 0.89008 0.93264 0.92121 0.91766 0.94523 0.95467 0.93106 0.93340 0.91547 0.90933 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 19.25 74.32 1.43 -1.72 16 2 C -0.24 -5.43 13.73 31.13 0.43 -5.00 16 3 C 0.16 3.17 6.22 70.18 0.44 3.60 16 4 O -0.38 -10.11 9.48 -129.99 -1.23 -11.35 16 5 C 0.07 1.37 3.13 29.85 0.09 1.47 16 6 H 0.11 1.70 7.79 -2.39 -0.02 1.68 16 7 C -0.16 -2.06 9.48 71.99 0.68 -1.38 16 8 C 0.51 14.22 6.49 87.65 0.57 14.79 16 9 O -0.56 -21.21 12.77 15.96 0.20 -21.01 16 10 N -0.70 -16.74 3.17 -422.80 -1.34 -18.08 16 11 C 0.20 5.72 0.35 3.63 0.00 5.73 16 12 C -0.12 -3.38 4.36 30.59 0.13 -3.25 16 13 C 0.07 1.54 5.41 71.98 0.39 1.93 16 14 O -0.42 -10.37 10.70 -148.98 -1.59 -11.96 16 15 C 0.03 0.41 11.01 113.37 1.25 1.66 16 16 C -0.14 -5.13 4.69 30.67 0.14 -4.99 16 17 C 0.13 5.82 3.91 86.36 0.34 6.16 16 18 N -0.62 -27.22 2.73 -698.26 -1.91 -29.13 16 19 C -0.24 -13.24 10.04 84.03 0.84 -12.40 16 20 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 21 C -0.03 -1.85 5.30 84.86 0.45 -1.40 16 22 N -0.96 -60.62 13.97 21.65 0.30 -60.31 16 23 Si 0.95 47.67 24.27 68.60 1.67 49.34 16 24 H -0.29 -14.80 6.47 99.48 0.64 -14.16 16 25 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 26 H -0.25 -11.79 6.67 99.48 0.66 -11.13 16 27 C 0.14 4.52 6.26 86.51 0.54 5.06 16 28 C -0.13 -3.22 4.71 30.82 0.15 -3.07 16 29 H 0.25 2.57 7.80 -4.43 -0.03 2.53 16 30 H 0.08 1.42 8.08 -2.38 -0.02 1.40 16 31 H 0.11 1.30 7.87 -2.38 -0.02 1.28 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.79 7.87 -2.39 -0.02 0.77 16 34 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 35 H 0.41 7.14 7.16 -92.71 -0.66 6.47 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.11 6.26 -2.39 -0.01 2.10 16 38 H 0.06 1.08 7.34 -2.39 -0.02 1.07 16 39 H 0.07 1.21 6.64 -2.38 -0.02 1.19 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.06 2.61 6.18 -2.39 -0.01 2.60 16 45 H 0.04 1.84 4.51 -2.39 -0.01 1.83 16 46 H 0.03 1.16 6.58 -2.39 -0.02 1.14 16 47 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 48 H 0.05 1.30 6.90 -2.38 -0.02 1.28 16 49 H 0.07 2.15 7.93 -2.39 -0.02 2.13 16 50 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.11 1.81 6.50 -2.39 -0.02 1.79 16 Total: -1.00 -81.78 398.58 4.12 -77.66 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.15 Total: 17.65 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 7.87 Total: 7.19 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -2.94 Total: -107.52 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -2.62 Total: -44.32 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.67 Total: 49.34 kcal Total: -81.78 4.12 -77.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151127952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.844 kcal (2) G-P(sol) polarization free energy of solvation -81.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds