Wall clock time and date at job start Tue Mar 31 2020 21:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47143 * 266.86547 * 3 2 1 5 5 C 1.42898 * 114.00137 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46960 * 329.99905 * 5 4 3 7 7 C 1.52997 * 109.47024 * 89.99708 * 5 4 3 8 8 C 1.50700 * 109.47233 * 210.00207 * 5 4 3 9 9 O 1.21280 * 119.99806 * 359.97438 * 8 5 4 10 10 N 1.34779 * 119.99748 * 180.02562 * 8 5 4 11 11 C 1.46503 * 119.99534 * 179.97438 * 10 8 5 12 12 C 1.53000 * 109.46799 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46041 * 299.96973 * 12 11 10 14 14 O 1.42904 * 109.47016 * 60.03280 * 13 12 11 15 15 C 1.42901 * 113.99888 * 179.97438 * 14 13 12 16 16 C 1.53042 * 109.45928 * 179.97438 * 12 11 10 17 17 C 1.53196 * 109.31301 * 178.61470 * 16 12 11 18 18 N 1.46919 * 108.77357 * 54.63738 * 17 16 12 19 19 C 1.36935 * 120.62952 * 126.36714 * 18 17 16 20 20 H 1.07992 * 120.00276 * 332.45452 * 19 18 17 21 21 C 1.38815 * 120.00026 * 152.17450 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.17001 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 163.17219 * 21 19 18 24 24 H 1.48499 * 109.47051 * 59.99668 * 23 21 19 25 25 H 1.48497 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46803 * 299.99780 * 23 21 19 27 27 C 1.46930 * 118.74055 * 306.64082 * 18 17 16 28 28 C 1.52762 * 109.00426 * 53.31040 * 27 18 17 29 29 H 4.38447 * 5.44442 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.46963 * 146.86477 * 3 2 1 31 31 H 1.08998 * 109.46890 * 26.86505 * 3 2 1 32 32 H 1.09004 * 109.47245 * 179.97438 * 7 5 4 33 33 H 1.08991 * 109.47556 * 300.00191 * 7 5 4 34 34 H 1.09005 * 109.47092 * 60.00277 * 7 5 4 35 35 H 0.96996 * 120.00099 * 359.97438 * 10 8 5 36 36 H 1.08994 * 109.47236 * 59.99742 * 11 10 8 37 37 H 1.09000 * 109.47165 * 299.99875 * 11 10 8 38 38 H 1.09001 * 109.46849 * 180.02562 * 13 12 11 39 39 H 1.08997 * 109.47591 * 300.03086 * 13 12 11 40 40 H 1.09002 * 109.46983 * 59.99847 * 15 14 13 41 41 H 1.09007 * 109.46958 * 179.97438 * 15 14 13 42 42 H 1.08993 * 109.47177 * 299.99760 * 15 14 13 43 43 H 1.09005 * 109.49382 * 58.66582 * 16 12 11 44 44 H 1.08998 * 109.50244 * 298.56756 * 16 12 11 45 45 H 1.09000 * 109.58299 * 294.85003 * 17 16 12 46 46 H 1.08994 * 109.70288 * 174.49711 * 17 16 12 47 47 H 0.97003 * 120.00199 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58738 * 173.14187 * 27 18 17 49 49 H 1.08996 * 109.58558 * 293.57263 * 27 18 17 50 50 H 1.09005 * 109.56252 * 185.54994 * 28 27 18 51 51 H 1.08999 * 109.38709 * 65.51901 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.0745 1.3452 5 6 4.5468 0.0808 1.4580 6 1 4.9793 -0.4794 0.6289 7 6 5.0552 1.5233 1.4190 8 6 4.9504 -0.5592 2.7613 9 8 4.1017 -0.9788 3.5192 10 7 6.2545 -0.6642 3.0850 11 6 6.6468 -1.2858 4.3523 12 6 8.1720 -1.2792 4.4729 13 6 8.7787 -2.0666 3.3098 14 8 8.3965 -1.4604 2.0735 15 6 8.9140 -2.1220 0.9173 16 6 8.5816 -1.9281 5.7971 17 6 10.1100 -1.9510 5.8987 18 7 10.6167 -0.5843 5.7143 19 6 11.4516 -0.0188 6.6407 20 1 11.4056 -0.3338 7.6727 21 6 12.3613 0.9551 6.2523 22 7 12.6621 1.1046 4.9797 23 14 13.1586 2.0535 7.5357 24 1 13.9179 1.2175 8.5000 25 1 14.0838 3.0040 6.8680 26 1 12.1073 2.8128 8.2594 27 6 10.2056 0.1665 4.5201 28 6 8.6806 0.1636 4.4311 29 1 -1.0500 -0.0002 0.0000 30 1 3.0089 0.8614 -0.5617 31 1 3.0097 -0.9159 -0.4644 32 1 6.1418 1.5281 1.5055 33 1 4.7633 1.9861 0.4764 34 1 4.6226 2.0835 2.2481 35 1 6.9333 -0.3282 2.4790 36 1 6.2849 -2.3135 4.3802 37 1 6.2140 -0.7256 5.1811 38 1 9.8653 -2.0624 3.3959 39 1 8.4159 -3.0941 3.3381 40 1 8.5543 -3.1507 0.8959 41 1 8.5786 -1.6014 0.0203 42 1 10.0033 -2.1186 0.9539 43 1 8.1990 -2.9480 5.8360 44 1 8.1704 -1.3529 6.6266 45 1 10.5180 -2.5997 5.1236 46 1 10.4075 -2.3218 6.8795 47 1 13.2975 1.7854 4.7082 48 1 10.5640 1.1933 4.5926 49 1 10.6216 -0.3060 3.6303 50 1 8.3685 0.6325 3.4979 51 1 8.2680 0.7193 5.2732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162270770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:53 Heat of formation + Delta-G solvation = -64.841732 kcal Electronic energy + Delta-G solvation = -30989.343141 eV Core-core repulsion = 26890.880613 eV Total energy + Delta-G solvation = -4098.462529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39355 -40.34934 -38.74790 -38.01872 -36.24556 -34.76608 -34.34285 -32.86609 -31.87129 -31.61855 -28.72799 -28.10089 -28.05928 -26.27078 -25.87482 -24.67134 -23.83098 -22.45347 -21.30308 -19.91077 -19.58113 -18.64939 -18.13989 -17.96001 -17.15547 -16.99987 -16.82811 -16.73421 -16.33304 -15.99359 -15.74502 -15.65213 -15.36904 -15.19834 -14.81348 -14.60365 -14.48825 -14.02397 -13.93597 -13.75730 -13.58245 -13.28881 -13.19090 -13.11312 -12.94138 -12.56349 -12.54857 -12.42139 -12.37539 -12.18502 -11.96650 -11.79449 -11.69572 -11.55395 -11.43349 -11.22931 -11.08425 -10.84930 -10.53301 -10.45255 -10.38083 -9.94245 -8.61731 -7.84438 -5.28115 1.37819 1.47416 1.49942 1.55889 1.64358 1.82249 2.15724 2.52975 2.81647 3.09992 3.30120 3.61422 3.70801 3.75625 3.76980 3.90963 3.96839 4.01609 4.09282 4.27280 4.31368 4.47379 4.47978 4.52568 4.56006 4.66295 4.67852 4.70087 4.72582 4.74624 4.81853 4.83543 4.94025 4.95506 5.01994 5.07893 5.18884 5.21971 5.24993 5.28335 5.40075 5.52475 5.60309 5.68669 5.83964 6.02653 6.25404 6.42780 6.60067 6.74204 7.19354 7.34347 7.91360 8.41427 9.21117 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.002560 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.212666 B =10933.781616 C =11162.399242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.386 6.386 5 C 0.076 3.924 6 H 0.123 0.877 7 C -0.168 4.168 8 C 0.504 3.496 9 O -0.584 6.584 10 N -0.696 5.696 11 C 0.142 3.858 12 C -0.048 4.048 13 C 0.079 3.921 14 O -0.402 6.402 15 C 0.029 3.971 16 C -0.112 4.112 17 C 0.141 3.859 18 N -0.609 5.609 19 C -0.260 4.260 20 H 0.064 0.936 21 C -0.049 4.049 22 N -0.930 5.930 23 Si 0.961 3.039 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.282 1.282 27 C 0.184 3.816 28 C -0.111 4.111 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.418 0.582 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.107 0.893 42 H 0.033 0.967 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.054 0.946 47 H 0.249 0.751 48 H 0.047 0.953 49 H 0.005 0.995 50 H 0.069 0.931 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.567 -4.646 -14.149 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.306 6.306 5 C 0.016 3.984 6 H 0.141 0.859 7 C -0.226 4.226 8 C 0.290 3.710 9 O -0.464 6.464 10 N -0.355 5.355 11 C 0.018 3.982 12 C -0.049 4.049 13 C 0.003 3.997 14 O -0.321 6.321 15 C -0.067 4.067 16 C -0.152 4.152 17 C 0.016 3.984 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.081 0.919 21 C -0.245 4.245 22 N -0.577 5.577 23 Si 0.790 3.210 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.208 1.208 27 C 0.059 3.941 28 C -0.150 4.150 29 H 0.268 0.732 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.125 0.875 42 H 0.052 0.948 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.023 0.977 50 H 0.087 0.913 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.227 -4.669 -13.542 21.645 hybrid contribution 1.270 0.582 0.406 1.455 sum -14.957 -4.087 -13.136 20.322 Atomic orbital electron populations 1.25865 0.96917 0.99619 0.95967 1.23169 0.95098 1.01942 1.03563 1.19470 0.84567 1.03465 0.83715 1.88067 1.20231 1.95096 1.27180 1.21988 0.82163 0.98522 0.95734 0.85906 1.22262 1.02505 0.93564 1.04257 1.20964 0.82617 0.78861 0.88544 1.90676 1.51750 1.50563 1.53407 1.46164 1.06832 1.60438 1.22019 1.21245 0.93325 0.97885 0.85792 1.20644 0.92967 0.96322 0.94954 1.22561 0.98529 0.95626 0.83012 1.87418 1.74337 1.55823 1.14522 1.22888 0.98101 0.97795 0.87880 1.21886 0.97054 1.01009 0.95235 1.21066 0.92423 0.86033 0.98899 1.44281 1.53754 1.11204 1.24041 1.19439 1.11444 1.18503 0.89693 0.91877 1.25704 0.98053 1.03091 0.97603 1.70158 1.36162 1.35400 1.15939 0.85439 0.77850 0.78874 0.78854 1.20263 1.22092 1.20833 1.20436 0.90245 0.96258 0.87210 1.21887 0.97513 0.95086 1.00524 0.73154 0.88092 0.88955 0.89518 0.88674 0.92940 0.73783 0.91557 0.92844 0.93714 0.92090 0.93232 0.87450 0.94840 0.89374 0.91929 0.95980 0.92782 0.94224 0.93460 0.97691 0.91261 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 19.25 74.32 1.43 -1.37 16 2 C -0.24 -4.85 13.73 31.13 0.43 -4.42 16 3 C 0.16 2.77 6.22 70.18 0.44 3.21 16 4 O -0.39 -9.69 9.48 -129.94 -1.23 -10.92 16 5 C 0.08 1.56 3.14 29.85 0.09 1.65 16 6 H 0.12 1.62 7.79 -2.38 -0.02 1.60 16 7 C -0.17 -2.79 9.42 71.98 0.68 -2.11 16 8 C 0.50 14.38 7.23 87.66 0.63 15.01 16 9 O -0.58 -22.36 16.50 16.01 0.26 -22.10 16 10 N -0.70 -17.95 4.50 -463.06 -2.08 -20.03 16 11 C 0.14 3.98 4.56 86.38 0.39 4.38 16 12 C -0.05 -1.42 0.51 -52.16 -0.03 -1.45 16 13 C 0.08 2.14 4.04 71.98 0.29 2.43 16 14 O -0.40 -9.54 6.77 -148.98 -1.01 -10.55 16 15 C 0.03 0.53 11.01 113.37 1.25 1.78 16 16 C -0.11 -3.43 4.91 30.67 0.15 -3.28 16 17 C 0.14 5.40 6.05 86.37 0.52 5.93 16 18 N -0.61 -29.16 3.00 -699.95 -2.10 -31.26 16 19 C -0.26 -14.00 9.58 84.03 0.81 -13.20 16 20 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 21 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 22 N -0.93 -53.69 11.18 21.65 0.24 -53.44 16 23 Si 0.96 44.50 29.59 68.60 2.03 46.53 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 C 0.18 8.38 4.81 86.22 0.41 8.80 16 28 C -0.11 -3.94 4.57 30.53 0.14 -3.80 16 29 H 0.25 2.02 7.80 -4.42 -0.03 1.98 16 30 H 0.10 1.13 7.87 -2.39 -0.02 1.11 16 31 H 0.09 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.09 1.28 7.56 -2.38 -0.02 1.26 16 33 H 0.09 1.08 7.87 -2.39 -0.02 1.06 16 34 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.42 9.73 4.10 -92.71 -0.38 9.35 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.47 4.99 -2.39 -0.01 1.45 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 1.36 8.14 -2.38 -0.02 1.35 16 42 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.02 0.84 6.69 -2.39 -0.02 0.82 16 46 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 47 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 48 H 0.05 2.52 6.05 -2.39 -0.01 2.50 16 49 H 0.01 0.24 6.70 -2.39 -0.02 0.23 16 50 H 0.07 2.22 6.49 -2.38 -0.02 2.21 16 51 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.27 403.85 4.70 -69.57 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.53 Total: 20.90 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 8.06 Total: 11.30 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.94 Total: -104.73 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.98 Total: -43.57 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -74.27 4.70 -69.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162270770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.729 kcal (2) G-P(sol) polarization free energy of solvation -74.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds