Wall clock time and date at job start Tue Mar 31 2020 21:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46959 * 215.62285 * 3 2 1 5 5 C 1.42902 * 113.99725 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47158 * 30.00205 * 5 4 3 7 7 C 1.53001 * 109.47162 * 269.99979 * 5 4 3 8 8 C 1.50699 * 109.46787 * 150.00204 * 5 4 3 9 9 O 1.21281 * 120.00013 * 5.00045 * 8 5 4 10 10 N 1.34779 * 119.99959 * 184.99870 * 8 5 4 11 11 C 1.46497 * 120.00069 * 180.02562 * 10 8 5 12 12 C 1.53008 * 109.47043 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.45942 * 60.00122 * 12 11 10 14 14 O 1.42908 * 109.47052 * 299.99824 * 13 12 11 15 15 C 1.42898 * 114.00100 * 180.02562 * 14 13 12 16 16 C 1.53038 * 109.45958 * 300.02667 * 12 11 10 17 17 C 1.53171 * 109.32741 * 301.36158 * 16 12 11 18 18 N 1.46926 * 108.76208 * 305.35494 * 17 16 12 19 19 C 1.36942 * 120.62873 * 233.58398 * 18 17 16 20 20 H 1.07998 * 119.99967 * 152.31178 * 19 18 17 21 21 C 1.38811 * 119.99967 * 332.31437 * 19 18 17 22 22 N 1.31613 * 120.00054 * 342.59581 * 21 19 18 23 23 Si 1.86801 * 119.99943 * 162.59829 * 21 19 18 24 24 H 1.48496 * 109.47206 * 94.34552 * 23 21 19 25 25 H 1.48497 * 109.47257 * 214.34854 * 23 21 19 26 26 H 1.48508 * 109.46922 * 334.34459 * 23 21 19 27 27 C 1.46922 * 118.74514 * 53.61407 * 18 17 16 28 28 C 1.53037 * 109.45934 * 179.97438 * 12 11 10 29 29 H 4.38443 * 5.44469 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47076 * 95.62318 * 3 2 1 31 31 H 1.08998 * 109.47324 * 335.62897 * 3 2 1 32 32 H 1.09004 * 109.46854 * 60.00228 * 7 5 4 33 33 H 1.08997 * 109.46900 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47269 * 300.00158 * 7 5 4 35 35 H 0.97001 * 119.99745 * 0.02562 * 10 8 5 36 36 H 1.08995 * 109.46886 * 299.99611 * 11 10 8 37 37 H 1.08998 * 109.47407 * 59.99921 * 11 10 8 38 38 H 1.08994 * 109.47249 * 59.99735 * 13 12 11 39 39 H 1.09003 * 109.46783 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46711 * 299.99835 * 15 14 13 41 41 H 1.08994 * 109.47312 * 59.99329 * 15 14 13 42 42 H 1.09001 * 109.47157 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.49866 * 61.29126 * 16 12 11 44 44 H 1.08998 * 109.49732 * 181.39672 * 16 12 11 45 45 H 1.08995 * 109.58811 * 185.57242 * 17 16 12 46 46 H 1.08995 * 109.71027 * 65.20382 * 17 16 12 47 47 H 0.97006 * 119.99998 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.59155 * 186.60151 * 27 18 17 49 49 H 1.08997 * 109.70537 * 66.23774 * 27 18 17 50 50 H 1.08997 * 109.49759 * 178.60651 * 28 12 11 51 51 H 1.08997 * 109.50085 * 298.67538 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0961 0.7847 5 6 4.5463 1.1887 0.8500 6 1 4.9788 0.7906 -0.0680 7 6 5.0557 0.3815 2.0457 8 6 4.9489 2.6321 1.0102 9 8 4.0999 3.4861 1.1543 10 7 6.2525 2.9739 0.9933 11 6 6.6440 4.3770 1.1496 12 6 8.1688 4.4903 1.0936 13 6 8.6696 3.9681 -0.2545 14 8 8.2876 2.5995 -0.4068 15 6 8.7094 2.0121 -1.6394 16 6 8.7836 3.6597 2.2224 17 6 8.2533 4.1626 3.5685 18 7 8.5141 5.6050 3.6701 19 6 9.1813 6.1190 4.7498 20 1 9.7541 7.0289 4.6476 21 6 9.1214 5.4707 5.9758 22 7 8.1785 4.5814 6.2045 23 14 10.3790 5.8605 7.3009 24 1 9.8346 6.9015 8.2092 25 1 10.6757 4.6308 8.0788 26 1 11.6266 6.3589 6.6680 27 6 8.0449 6.4855 2.5916 28 6 8.5774 5.9561 1.2563 29 1 -1.0501 -0.0001 -0.0003 30 1 3.0093 0.1015 -1.0228 31 1 3.0098 -0.9352 0.4240 32 1 4.7645 -0.6625 1.9298 33 1 6.1422 0.4525 2.0957 34 1 4.6233 0.7796 2.9637 35 1 6.9316 2.2909 0.8776 36 1 6.2064 4.9680 0.3451 37 1 6.2866 4.7491 2.1097 38 1 8.2315 4.5593 -1.0586 39 1 9.7559 4.0484 -0.2943 40 1 8.2723 2.5627 -2.4725 41 1 9.7964 2.0522 -1.7078 42 1 8.3805 0.9736 -1.6782 43 1 8.5113 2.6122 2.0931 44 1 9.8687 3.7598 2.1984 45 1 8.7620 3.6414 4.3794 46 1 7.1807 3.9799 3.6326 47 1 8.1365 4.1286 7.0614 48 1 8.4159 7.4968 2.7579 49 1 6.9551 6.4946 2.5725 50 1 9.6644 6.0346 1.2413 51 1 8.1589 6.5434 0.4389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162270773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:57 Heat of formation + Delta-G solvation = -42.760724 kcal Electronic energy + Delta-G solvation = -31279.084720 eV Core-core repulsion = 27181.579696 eV Total energy + Delta-G solvation = -4097.505024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.13630 -39.06085 -37.60007 -37.09918 -34.47041 -33.63570 -33.06262 -31.36928 -30.70407 -29.94189 -27.68478 -27.26836 -26.40949 -25.74841 -23.85961 -23.57861 -22.25443 -20.88289 -20.08081 -18.87448 -18.41143 -17.19459 -17.00121 -16.38551 -16.14080 -15.89981 -15.76659 -15.46524 -15.14990 -14.70113 -14.65271 -14.47881 -13.81186 -13.67814 -13.52764 -13.32732 -13.01325 -12.88945 -12.76392 -12.54152 -12.29250 -12.20782 -11.91539 -11.62921 -11.48603 -11.39631 -11.26478 -10.92501 -10.82915 -10.71091 -10.69731 -10.53752 -10.24551 -10.18177 -9.92823 -9.85119 -9.74900 -9.52047 -9.39219 -9.24003 -8.55699 -8.40335 -6.63132 -5.75754 -3.17627 2.23966 2.60749 2.94425 3.24677 3.38600 3.46041 3.47834 3.67863 3.97962 4.41544 4.51681 4.74314 4.93325 4.95166 4.95946 4.98765 5.03829 5.17859 5.21489 5.28024 5.34332 5.42792 5.49883 5.52054 5.55084 5.57883 5.62853 5.67641 5.70115 5.72248 6.03347 6.06719 6.11970 6.24591 6.37833 6.40366 6.61310 6.63927 6.71473 6.81365 6.86512 6.92084 7.00152 7.08857 7.37031 7.39867 7.71152 7.82329 7.99199 8.47557 8.63318 9.24120 9.87741 10.44273 11.32441 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.003211 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.431487 B = 8716.600228 C =10016.538138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.190 4.190 3 C 0.169 3.831 4 O -0.350 6.350 5 C 0.074 3.926 6 H 0.085 0.915 7 C -0.172 4.172 8 C 0.508 3.492 9 O -0.530 6.530 10 N -0.705 5.705 11 C 0.133 3.867 12 C -0.059 4.059 13 C 0.072 3.928 14 O -0.392 6.392 15 C 0.033 3.967 16 C -0.125 4.125 17 C 0.170 3.830 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.143 3.857 28 C -0.119 4.119 29 H 0.222 0.778 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.086 0.914 46 H 0.022 0.978 47 H 0.253 0.747 48 H 0.056 0.944 49 H 0.022 0.978 50 H 0.066 0.934 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -10.937 -17.565 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.190 4.190 3 C 0.093 3.907 4 O -0.269 6.269 5 C 0.013 3.987 6 H 0.103 0.897 7 C -0.230 4.230 8 C 0.292 3.708 9 O -0.405 6.405 10 N -0.363 5.363 11 C 0.010 3.990 12 C -0.059 4.059 13 C -0.004 4.004 14 O -0.311 6.311 15 C -0.064 4.064 16 C -0.164 4.164 17 C 0.044 3.956 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.016 3.984 28 C -0.159 4.159 29 H 0.238 0.762 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.249 0.751 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.040 0.960 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.040 0.960 50 H 0.084 0.916 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.854 -10.377 -17.060 20.336 hybrid contribution 1.096 -0.266 0.235 1.152 sum -2.758 -10.642 -16.825 20.098 Atomic orbital electron populations 1.24954 0.95875 0.98737 0.99719 1.22474 0.93852 1.01528 1.01117 1.19166 0.85013 0.90782 0.95694 1.88145 1.19406 1.48383 1.70947 1.21917 0.82329 0.94512 0.99947 0.89711 1.22249 1.02230 0.99886 0.98593 1.20175 0.83165 0.89784 0.77665 1.90715 1.50424 1.51189 1.48221 1.46129 1.06688 1.10527 1.72968 1.21450 0.93519 0.81551 1.02472 1.20807 0.94278 0.97193 0.93652 1.22776 0.98593 0.81492 0.97564 1.87552 1.78766 1.26511 1.38256 1.22700 0.98846 0.98440 0.86370 1.22172 0.99908 0.97465 0.96876 1.20805 0.97520 0.84450 0.92794 1.44046 1.65585 1.01501 1.20216 1.19158 1.22271 1.09488 0.87280 0.91745 1.25028 0.97665 1.00115 0.96826 1.70044 1.31264 1.29900 1.23185 0.86325 0.81502 0.77301 0.81894 1.21516 1.21632 1.20523 1.20929 0.96077 0.94225 0.87173 1.21986 1.01355 0.92791 0.99746 0.76156 0.90835 0.90671 0.91471 0.90427 0.90652 0.75061 0.92647 0.89733 0.93560 0.93077 0.94372 0.94129 0.89940 0.92769 0.92534 0.89592 0.95971 0.93689 0.92583 0.95979 0.91558 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 19.25 29.55 0.57 -1.21 16 2 C -0.19 -2.24 13.73 -37.12 -0.51 -2.75 16 3 C 0.17 1.78 6.22 34.37 0.21 1.99 16 4 O -0.35 -5.13 9.48 -55.09 -0.52 -5.66 16 5 C 0.07 0.94 3.13 -27.88 -0.09 0.86 16 6 H 0.09 0.79 7.79 -51.93 -0.40 0.38 16 7 C -0.17 -1.93 9.48 37.16 0.35 -1.57 16 8 C 0.51 8.54 7.18 -10.98 -0.08 8.46 16 9 O -0.53 -11.43 16.51 -14.31 -0.24 -11.67 16 10 N -0.70 -10.79 4.59 -60.29 -0.28 -11.07 16 11 C 0.13 2.25 3.81 -4.04 -0.02 2.23 16 12 C -0.06 -0.90 0.51 -154.47 -0.08 -0.98 16 13 C 0.07 0.89 4.80 37.16 0.18 1.07 16 14 O -0.39 -4.49 6.73 -35.23 -0.24 -4.73 16 15 C 0.03 0.27 11.01 101.05 1.11 1.38 16 16 C -0.12 -2.23 4.59 -26.62 -0.12 -2.35 16 17 C 0.17 3.92 4.84 -3.72 -0.02 3.90 16 18 N -0.59 -14.38 2.99 -172.34 -0.52 -14.90 16 19 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 20 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 22 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 23 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.14 2.89 6.04 -3.71 -0.02 2.87 16 28 C -0.12 -1.90 4.90 -26.61 -0.13 -2.03 16 29 H 0.22 1.35 7.80 -54.08 -0.42 0.93 16 30 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 33 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.41 5.52 4.49 -40.82 -0.18 5.33 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.75 4.99 -51.93 -0.26 1.49 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.89 6.50 -51.93 -0.34 0.55 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 46 H 0.02 0.56 6.70 -51.93 -0.35 0.21 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 49 H 0.02 0.47 6.70 -51.93 -0.35 0.12 16 50 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 404.70 15.07 6.10 6.10 Total: -1.00 -34.35 404.70 -7.42 -41.77 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.45 Total: 4.16 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 1.13 Total: 4.87 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.17 Total: -51.42 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -1.00 Total: -22.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.35 -7.42 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162270773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.992 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds