Wall clock time and date at job start Tue Mar 31 2020 21:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46959 * 215.62285 * 3 2 1 5 5 C 1.42902 * 113.99725 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47158 * 30.00205 * 5 4 3 7 7 C 1.53001 * 109.47162 * 269.99979 * 5 4 3 8 8 C 1.50699 * 109.46787 * 150.00204 * 5 4 3 9 9 O 1.21281 * 120.00013 * 5.00045 * 8 5 4 10 10 N 1.34779 * 119.99959 * 184.99870 * 8 5 4 11 11 C 1.46497 * 120.00069 * 180.02562 * 10 8 5 12 12 C 1.53008 * 109.47043 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.45942 * 60.00122 * 12 11 10 14 14 O 1.42908 * 109.47052 * 299.99824 * 13 12 11 15 15 C 1.42898 * 114.00100 * 180.02562 * 14 13 12 16 16 C 1.53038 * 109.45958 * 300.02667 * 12 11 10 17 17 C 1.53171 * 109.32741 * 301.36158 * 16 12 11 18 18 N 1.46926 * 108.76208 * 305.35494 * 17 16 12 19 19 C 1.36942 * 120.62873 * 233.58398 * 18 17 16 20 20 H 1.07998 * 119.99967 * 152.31178 * 19 18 17 21 21 C 1.38811 * 119.99967 * 332.31437 * 19 18 17 22 22 N 1.31613 * 120.00054 * 342.59581 * 21 19 18 23 23 Si 1.86801 * 119.99943 * 162.59829 * 21 19 18 24 24 H 1.48496 * 109.47206 * 94.34552 * 23 21 19 25 25 H 1.48497 * 109.47257 * 214.34854 * 23 21 19 26 26 H 1.48508 * 109.46922 * 334.34459 * 23 21 19 27 27 C 1.46922 * 118.74514 * 53.61407 * 18 17 16 28 28 C 1.53037 * 109.45934 * 179.97438 * 12 11 10 29 29 H 4.38443 * 5.44469 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47076 * 95.62318 * 3 2 1 31 31 H 1.08998 * 109.47324 * 335.62897 * 3 2 1 32 32 H 1.09004 * 109.46854 * 60.00228 * 7 5 4 33 33 H 1.08997 * 109.46900 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47269 * 300.00158 * 7 5 4 35 35 H 0.97001 * 119.99745 * 0.02562 * 10 8 5 36 36 H 1.08995 * 109.46886 * 299.99611 * 11 10 8 37 37 H 1.08998 * 109.47407 * 59.99921 * 11 10 8 38 38 H 1.08994 * 109.47249 * 59.99735 * 13 12 11 39 39 H 1.09003 * 109.46783 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46711 * 299.99835 * 15 14 13 41 41 H 1.08994 * 109.47312 * 59.99329 * 15 14 13 42 42 H 1.09001 * 109.47157 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.49866 * 61.29126 * 16 12 11 44 44 H 1.08998 * 109.49732 * 181.39672 * 16 12 11 45 45 H 1.08995 * 109.58811 * 185.57242 * 17 16 12 46 46 H 1.08995 * 109.71027 * 65.20382 * 17 16 12 47 47 H 0.97006 * 119.99998 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.59155 * 186.60151 * 27 18 17 49 49 H 1.08997 * 109.70537 * 66.23774 * 27 18 17 50 50 H 1.08997 * 109.49759 * 178.60651 * 28 12 11 51 51 H 1.08997 * 109.50085 * 298.67538 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0961 0.7847 5 6 4.5463 1.1887 0.8500 6 1 4.9788 0.7906 -0.0680 7 6 5.0557 0.3815 2.0457 8 6 4.9489 2.6321 1.0102 9 8 4.0999 3.4861 1.1543 10 7 6.2525 2.9739 0.9933 11 6 6.6440 4.3770 1.1496 12 6 8.1688 4.4903 1.0936 13 6 8.6696 3.9681 -0.2545 14 8 8.2876 2.5995 -0.4068 15 6 8.7094 2.0121 -1.6394 16 6 8.7836 3.6597 2.2224 17 6 8.2533 4.1626 3.5685 18 7 8.5141 5.6050 3.6701 19 6 9.1813 6.1190 4.7498 20 1 9.7541 7.0289 4.6476 21 6 9.1214 5.4707 5.9758 22 7 8.1785 4.5814 6.2045 23 14 10.3790 5.8605 7.3009 24 1 9.8346 6.9015 8.2092 25 1 10.6757 4.6308 8.0788 26 1 11.6266 6.3589 6.6680 27 6 8.0449 6.4855 2.5916 28 6 8.5774 5.9561 1.2563 29 1 -1.0501 -0.0001 -0.0003 30 1 3.0093 0.1015 -1.0228 31 1 3.0098 -0.9352 0.4240 32 1 4.7645 -0.6625 1.9298 33 1 6.1422 0.4525 2.0957 34 1 4.6233 0.7796 2.9637 35 1 6.9316 2.2909 0.8776 36 1 6.2064 4.9680 0.3451 37 1 6.2866 4.7491 2.1097 38 1 8.2315 4.5593 -1.0586 39 1 9.7559 4.0484 -0.2943 40 1 8.2723 2.5627 -2.4725 41 1 9.7964 2.0522 -1.7078 42 1 8.3805 0.9736 -1.6782 43 1 8.5113 2.6122 2.0931 44 1 9.8687 3.7598 2.1984 45 1 8.7620 3.6414 4.3794 46 1 7.1807 3.9799 3.6326 47 1 8.1365 4.1286 7.0614 48 1 8.4159 7.4968 2.7579 49 1 6.9551 6.4946 2.5725 50 1 9.6644 6.0346 1.2413 51 1 8.1589 6.5434 0.4389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162270773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:56 Heat of formation + Delta-G solvation = -65.507256 kcal Electronic energy + Delta-G solvation = -31280.071084 eV Core-core repulsion = 27181.579696 eV Total energy + Delta-G solvation = -4098.491388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42435 -40.25823 -38.70409 -38.24918 -36.06004 -34.75136 -34.32571 -32.85238 -32.00305 -31.59061 -28.94095 -28.06460 -27.65844 -26.86341 -25.46162 -24.67114 -23.83768 -22.49501 -21.33516 -20.03059 -19.56128 -18.75096 -18.00084 -17.74737 -17.08832 -17.05629 -16.81560 -16.70639 -16.43816 -16.18450 -15.74735 -15.64342 -15.29668 -15.22695 -14.95201 -14.60501 -14.40611 -14.11082 -13.90410 -13.68748 -13.54023 -13.27246 -13.18044 -13.03312 -12.92441 -12.64750 -12.52262 -12.43862 -12.27017 -12.25567 -11.97622 -11.81651 -11.70507 -11.56159 -11.43002 -11.19514 -11.08712 -10.85379 -10.53753 -10.46632 -10.40176 -9.91261 -8.63789 -7.84700 -5.29599 1.37682 1.46502 1.47530 1.57827 1.65039 1.81657 2.17178 2.52591 2.82135 3.10636 3.29770 3.60807 3.68662 3.76072 3.76969 3.92186 3.99136 4.01371 4.09247 4.26433 4.29887 4.47686 4.49757 4.53924 4.57894 4.65451 4.68061 4.70861 4.72725 4.74283 4.80488 4.86728 4.93678 4.99218 5.01123 5.05766 5.18829 5.20892 5.26313 5.29750 5.38894 5.50646 5.62012 5.67556 5.82679 6.03380 6.29369 6.41154 6.59589 6.76379 7.17494 7.38289 7.89745 8.41083 9.21166 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.003211 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.431487 B = 8716.600228 C =10016.538138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.238 4.238 3 C 0.162 3.838 4 O -0.389 6.389 5 C 0.081 3.919 6 H 0.130 0.870 7 C -0.168 4.168 8 C 0.498 3.502 9 O -0.589 6.589 10 N -0.691 5.691 11 C 0.140 3.860 12 C -0.051 4.051 13 C 0.082 3.918 14 O -0.408 6.408 15 C 0.028 3.972 16 C -0.109 4.109 17 C 0.182 3.818 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.068 0.932 21 C -0.054 4.054 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.267 1.267 27 C 0.136 3.864 28 C -0.108 4.108 29 H 0.252 0.748 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.419 0.581 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.049 0.951 46 H -0.012 1.012 47 H 0.247 0.753 48 H 0.056 0.944 49 H 0.005 0.995 50 H 0.075 0.925 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -12.335 -20.445 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.238 4.238 3 C 0.087 3.913 4 O -0.309 6.309 5 C 0.020 3.980 6 H 0.148 0.852 7 C -0.225 4.225 8 C 0.285 3.715 9 O -0.469 6.469 10 N -0.349 5.349 11 C 0.016 3.984 12 C -0.052 4.052 13 C 0.005 3.995 14 O -0.327 6.327 15 C -0.068 4.068 16 C -0.148 4.148 17 C 0.056 3.944 18 N -0.332 5.332 19 C -0.390 4.390 20 H 0.086 0.914 21 C -0.249 4.249 22 N -0.582 5.582 23 Si 0.794 3.206 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.191 1.191 27 C 0.011 3.989 28 C -0.147 4.147 29 H 0.269 0.731 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.120 0.880 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.006 0.994 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.023 0.977 50 H 0.093 0.907 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.299 -11.792 -19.987 23.319 hybrid contribution 0.505 0.190 1.110 1.234 sum -1.794 -11.602 -18.877 22.230 Atomic orbital electron populations 1.25873 0.96930 0.97261 0.98371 1.23197 0.95153 1.02961 1.02495 1.19504 0.84555 0.90598 0.96622 1.88095 1.20303 1.50396 1.72075 1.21965 0.82176 0.91414 1.02409 0.85249 1.22254 1.02535 1.01323 0.96439 1.21111 0.82809 0.91435 0.76184 1.90679 1.51950 1.53296 1.50959 1.46054 1.06784 1.10169 1.71927 1.21233 0.94640 0.82521 0.99996 1.20696 0.92763 0.96668 0.95039 1.22551 0.99292 0.82418 0.95192 1.87482 1.79174 1.25853 1.40234 1.22918 0.99530 0.99323 0.84990 1.21926 0.99750 0.98536 0.94546 1.20528 0.95102 0.84008 0.94738 1.44327 1.65702 1.02500 1.20652 1.19533 1.21920 1.09373 0.88157 0.91405 1.25804 0.99478 1.00547 0.99057 1.70224 1.33166 1.31391 1.23392 0.85286 0.79543 0.76660 0.79088 1.21693 1.21962 1.19126 1.21082 0.95258 0.94031 0.88524 1.21842 1.01758 0.93449 0.97688 0.73127 0.88597 0.88029 0.88152 0.89455 0.93983 0.73713 0.92236 0.94535 0.91872 0.91647 0.93601 0.93323 0.88011 0.91260 0.92283 0.93302 0.99433 0.94343 0.92536 0.97660 0.90663 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 19.25 74.32 1.43 -1.77 16 2 C -0.24 -5.43 13.73 31.13 0.43 -5.00 16 3 C 0.16 3.13 6.22 70.18 0.44 3.57 16 4 O -0.39 -11.24 9.48 -129.99 -1.23 -12.47 16 5 C 0.08 1.95 3.13 29.85 0.09 2.05 16 6 H 0.13 1.93 7.79 -2.39 -0.02 1.91 16 7 C -0.17 -3.57 9.48 71.98 0.68 -2.89 16 8 C 0.50 16.95 7.18 87.66 0.63 17.58 16 9 O -0.59 -26.67 16.51 15.96 0.26 -26.40 16 10 N -0.69 -20.90 4.59 -463.06 -2.12 -23.03 16 11 C 0.14 4.78 3.81 86.38 0.33 5.11 16 12 C -0.05 -1.50 0.51 -52.15 -0.03 -1.52 16 13 C 0.08 1.72 4.80 71.98 0.35 2.07 16 14 O -0.41 -7.84 6.73 -148.98 -1.00 -8.84 16 15 C 0.03 0.34 11.01 113.37 1.25 1.59 16 16 C -0.11 -3.81 4.59 30.66 0.14 -3.67 16 17 C 0.18 8.77 4.84 86.36 0.42 9.19 16 18 N -0.61 -30.60 2.99 -699.16 -2.09 -32.70 16 19 C -0.26 -14.37 9.58 84.03 0.81 -13.56 16 20 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -3.05 4.91 84.86 0.42 -2.63 16 22 N -0.94 -56.84 11.19 21.65 0.24 -56.59 16 23 Si 0.97 45.45 29.59 68.60 2.03 47.47 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 27 C 0.14 5.65 6.04 86.36 0.52 6.17 16 28 C -0.11 -3.28 4.90 30.67 0.15 -3.13 16 29 H 0.25 2.58 7.80 -4.41 -0.03 2.54 16 30 H 0.10 1.35 8.08 -2.38 -0.02 1.33 16 31 H 0.10 1.34 7.87 -2.39 -0.02 1.32 16 32 H 0.10 1.46 7.87 -2.38 -0.02 1.44 16 33 H 0.09 1.65 7.92 -2.39 -0.02 1.64 16 34 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.42 10.60 4.49 -92.71 -0.42 10.18 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.61 4.99 -2.39 -0.01 1.60 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 2.20 6.50 -2.39 -0.02 2.19 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 2.70 6.04 -2.39 -0.01 2.69 16 46 H -0.01 -0.67 6.70 -2.39 -0.02 -0.69 16 47 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 48 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 49 H 0.01 0.24 6.70 -2.39 -0.02 0.23 16 50 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -81.49 404.70 4.63 -76.87 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.50 Total: 22.55 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 8.05 Total: 13.14 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -3.98 Total: -112.32 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.97 Total: -47.71 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -81.49 4.63 -76.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162270773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.361 kcal (2) G-P(sol) polarization free energy of solvation -81.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds