Wall clock time and date at job start Tue Mar 31 2020 21:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47218 * 2 1 4 4 O 1.42895 * 109.47388 * 120.00530 * 2 1 3 5 5 C 1.50710 * 109.46989 * 240.00337 * 2 1 3 6 6 O 1.21279 * 119.99909 * 244.99523 * 5 2 1 7 7 N 1.34780 * 119.99688 * 64.99463 * 5 2 1 8 8 C 1.47551 * 118.75102 * 359.97438 * 7 5 2 9 9 C 1.54110 * 112.09948 * 138.06282 * 8 7 5 10 10 C 1.50671 * 110.24851 * 319.32763 * 9 8 7 11 11 C 1.52993 * 109.83886 * 91.86968 * 10 9 8 12 12 C 1.55172 * 107.90882 * 152.34788 * 11 10 9 13 13 C 1.54545 * 101.80128 * 219.62017 * 12 11 10 14 14 N 1.46700 * 105.35610 * 26.20707 * 13 12 11 15 15 C 1.46505 * 124.33333 * 162.74317 * 14 13 12 16 16 C 1.52997 * 109.47212 * 269.72632 * 15 14 13 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 C 1.34260 * 111.33488 * 342.48020 * 14 13 12 26 26 O 1.21281 * 124.85397 * 180.43498 * 25 14 13 27 27 C 1.47354 * 113.97208 * 275.87271 * 11 10 9 28 28 C 1.44575 * 118.74341 * 179.97438 * 7 5 2 29 29 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47218 * 299.99597 * 1 2 3 31 31 H 1.08994 * 109.47443 * 59.99874 * 1 2 3 32 32 H 0.96694 * 114.00436 * 59.99690 * 4 2 1 33 33 H 1.09002 * 108.95339 * 258.73246 * 8 7 5 34 34 H 1.08994 * 108.95956 * 17.38265 * 8 7 5 35 35 H 1.08995 * 109.34300 * 79.54636 * 9 8 7 36 36 H 1.09007 * 109.33762 * 199.22420 * 9 8 7 37 37 H 1.09002 * 109.40462 * 331.76728 * 10 9 8 38 38 H 1.09002 * 109.41561 * 211.98437 * 10 9 8 39 39 H 1.08997 * 110.95112 * 337.98580 * 12 11 10 40 40 H 1.09003 * 110.94725 * 101.65481 * 12 11 10 41 41 H 1.09002 * 110.40325 * 267.18858 * 13 12 11 42 42 H 1.08996 * 110.18331 * 145.11514 * 13 12 11 43 43 H 1.09002 * 109.47068 * 29.72692 * 15 14 13 44 44 H 1.09001 * 109.47372 * 149.72780 * 15 14 13 45 45 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 46 46 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 47 47 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.23905 * 182.53778 * 27 11 10 49 49 H 1.09000 * 109.23390 * 301.96643 * 27 11 10 50 50 H 1.08999 * 109.43942 * 150.91812 * 28 7 5 51 51 H 1.08992 * 109.42555 * 30.99565 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7104 -1.2306 6 8 2.6530 -1.7466 -1.1217 7 7 1.7917 -0.1941 -2.4521 8 6 1.0334 1.0677 -2.5525 9 6 1.6338 2.0230 -3.6022 10 6 3.1385 2.0011 -3.5270 11 6 3.6914 0.9523 -4.4939 12 6 5.1134 1.4013 -4.9228 13 6 5.1231 1.0301 -6.4230 14 7 3.7172 1.0646 -6.8407 15 6 3.2708 1.1356 -8.2343 16 6 3.1237 2.6011 -8.6486 17 6 2.6651 2.6742 -10.0823 18 1 2.4952 1.7663 -10.6418 19 6 2.4615 3.9002 -10.6793 20 7 2.6681 5.0059 -9.9977 21 14 1.8938 3.9909 -12.4566 22 1 0.4095 4.0006 -12.5022 23 1 2.4162 5.2331 -13.0804 24 1 2.4041 2.8111 -13.2001 25 6 2.8920 1.0169 -5.7828 26 8 1.6809 1.0236 -5.8476 27 6 3.7177 -0.4144 -3.9436 28 6 2.2866 -0.8977 -3.6141 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7211 -1.5952 1.2328 33 1 0.0035 0.8408 -2.8283 34 1 1.0373 1.5615 -1.5809 35 1 1.3178 1.7105 -4.5974 36 1 1.2795 3.0363 -3.4125 37 1 3.4468 1.7552 -2.5109 38 1 3.5290 2.9828 -3.7954 39 1 5.2423 2.4744 -4.7819 40 1 5.8780 0.8446 -4.3809 41 1 5.5343 0.0307 -6.5645 42 1 5.7024 1.7607 -6.9874 43 1 4.0048 0.6485 -8.8762 44 1 2.3095 0.6316 -8.3341 45 1 2.3897 3.0882 -8.0067 46 1 4.0850 3.1052 -8.5489 47 1 2.5245 5.8684 -10.4176 48 1 4.1646 -1.0876 -4.6752 49 1 4.3176 -0.4236 -3.0336 50 1 1.6325 -0.7005 -4.4634 51 1 2.3033 -1.9681 -3.4098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269257228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:46 Heat of formation + Delta-G solvation = -96.333641 kcal Electronic energy + Delta-G solvation = -31645.223473 eV Core-core repulsion = 27545.395353 eV Total energy + Delta-G solvation = -4099.828120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64816 -40.21285 -37.38629 -36.59866 -36.44616 -34.76620 -33.15039 -32.67292 -31.48663 -30.37598 -28.65800 -27.25140 -25.79029 -25.13405 -24.62722 -22.75329 -21.94607 -21.48642 -20.52306 -19.52759 -18.76058 -17.80915 -17.02736 -16.78533 -16.13456 -16.06111 -15.80249 -15.57759 -15.05831 -14.76101 -14.54584 -14.51234 -14.12733 -13.82427 -13.75377 -13.31631 -13.11603 -12.89362 -12.82447 -12.73074 -12.51241 -12.34734 -12.22724 -12.11030 -12.06750 -11.86565 -11.50766 -11.46058 -11.20624 -11.01199 -10.99048 -10.86255 -10.70235 -10.64596 -10.29785 -10.01342 -9.89928 -9.62489 -9.30200 -8.74926 -8.62324 -8.43452 -8.02758 -6.08597 -4.12397 2.37118 2.81085 2.85182 3.27530 3.33229 3.35429 3.43483 3.94552 4.13475 4.24744 4.38228 4.40539 4.58973 4.65672 4.69938 4.79772 4.96352 5.00647 5.07774 5.15703 5.26166 5.27787 5.28431 5.37848 5.42755 5.51165 5.59225 5.64217 5.68841 5.72128 5.76699 5.85125 5.90675 5.92236 5.97737 6.05158 6.13948 6.23845 6.36449 6.49414 6.65462 6.73924 7.02105 7.12106 7.28490 7.47758 7.61006 7.77820 7.90342 7.96838 8.26134 8.52798 8.94075 9.52168 11.02664 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.002659 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.120192 B =10525.953295 C =11003.353703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.088 3.912 3 H 0.123 0.877 4 O -0.542 6.542 5 C 0.479 3.521 6 O -0.540 6.540 7 N -0.591 5.591 8 C 0.114 3.886 9 C -0.235 4.235 10 C -0.088 4.088 11 C -0.088 4.088 12 C -0.130 4.130 13 C 0.098 3.902 14 N -0.601 5.601 15 C 0.124 3.876 16 C 0.013 3.987 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.519 3.481 26 O -0.509 6.509 27 C -0.108 4.108 28 C 0.108 3.892 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.382 0.618 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.173 0.827 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.261 0.739 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.094 0.906 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -8.987 18.442 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.026 3.974 3 H 0.141 0.859 4 O -0.347 6.347 5 C 0.266 3.734 6 O -0.418 6.418 7 N -0.324 5.324 8 C -0.008 4.008 9 C -0.271 4.271 10 C -0.126 4.126 11 C -0.092 4.092 12 C -0.167 4.167 13 C -0.025 4.025 14 N -0.330 5.330 15 C 0.004 3.996 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.308 3.692 26 O -0.389 6.389 27 C -0.147 4.147 28 C -0.015 4.015 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.187 0.813 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.112 0.888 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.710 -8.757 18.420 20.408 hybrid contribution -0.380 -0.042 -1.130 1.193 sum 0.330 -8.798 17.290 19.403 Atomic orbital electron populations 1.22632 0.94067 1.03728 1.04361 1.21844 0.94586 0.97226 0.83782 0.85947 1.86582 1.77578 1.29801 1.40694 1.21668 0.80091 0.85938 0.85718 1.90691 1.40735 1.24012 1.86330 1.47749 1.54626 1.24275 1.05775 1.22170 0.94912 0.83658 1.00045 1.23572 0.95631 0.99191 1.08668 1.21006 0.96527 0.97144 0.97970 1.20474 0.95924 0.97567 0.95207 1.23042 0.95870 1.02669 0.95145 1.22088 0.83569 1.01753 0.95110 1.48530 1.06527 1.70354 1.07637 1.21879 0.99247 1.01630 0.76806 1.19389 0.97501 0.89138 0.96428 1.21069 1.45943 0.92441 0.96773 0.92477 1.24997 0.95337 0.95736 0.98143 1.69970 1.48847 0.97498 1.36772 0.86555 0.79021 0.77525 0.84675 1.20545 1.21178 1.19804 1.20735 0.87003 0.75368 0.86083 1.89991 1.13186 1.52305 1.83467 1.20973 0.98182 0.94083 1.01456 1.21505 0.94748 0.96734 0.88524 0.91708 0.90512 0.90010 0.76897 0.91505 0.91043 0.81270 0.91272 0.92040 0.91424 0.89658 0.89546 0.91382 0.89904 0.91494 0.90927 0.96064 0.96497 0.92890 0.90596 0.90541 0.88774 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 9.13 37.16 0.34 -0.95 16 2 C 0.09 0.80 3.16 -27.88 -0.09 0.71 16 3 H 0.12 0.99 7.14 -51.93 -0.37 0.62 16 4 O -0.54 -5.54 12.99 -55.09 -0.72 -6.26 16 5 C 0.48 5.63 7.04 -10.98 -0.08 5.55 16 6 O -0.54 -8.11 15.77 -14.30 -0.23 -8.33 16 7 N -0.59 -6.64 2.25 -172.65 -0.39 -7.03 16 8 C 0.11 1.14 4.53 -2.89 -0.01 1.13 16 9 C -0.24 -2.92 5.49 -27.32 -0.15 -3.07 16 10 C -0.09 -1.05 4.64 -27.90 -0.13 -1.18 16 11 C -0.09 -1.09 0.50 -156.69 -0.08 -1.17 16 12 C -0.13 -1.40 6.17 -24.77 -0.15 -1.55 16 13 C 0.10 1.24 7.34 -3.12 -0.02 1.21 16 14 N -0.60 -9.98 2.93 -172.24 -0.50 -10.48 16 15 C 0.12 2.46 5.87 -4.04 -0.02 2.44 16 16 C 0.01 0.33 5.30 -27.89 -0.15 0.19 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 C 0.52 8.44 6.01 -10.67 -0.06 8.37 16 26 O -0.51 -9.52 12.07 5.56 0.07 -9.45 16 27 C -0.11 -1.25 4.41 -28.61 -0.13 -1.38 16 28 C 0.11 1.33 5.27 -4.23 -0.02 1.31 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.52 5.19 -51.93 -0.27 0.25 16 32 H 0.38 3.01 8.79 45.56 0.40 3.41 16 33 H 0.07 0.64 7.61 -51.93 -0.40 0.24 16 34 H 0.07 0.55 5.01 -51.93 -0.26 0.29 16 35 H 0.17 2.70 3.00 -58.89 -0.18 2.53 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.68 7.50 -51.93 -0.39 0.29 16 38 H 0.07 0.82 7.32 -51.93 -0.38 0.44 16 39 H 0.08 0.92 7.30 -51.93 -0.38 0.54 16 40 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.50 7.92 -51.93 -0.41 1.09 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.09 1.29 5.89 -51.93 -0.31 0.99 16 51 H 0.08 1.04 7.31 -51.93 -0.38 0.66 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -33.16 384.92 -8.92 -42.07 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.50 Total: 4.57 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.17 Total: -1.49 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.16 Total: -43.11 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.87 Total: -24.04 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.16 -8.92 -42.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269257228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.263 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds