Wall clock time and date at job start Tue Mar 31 2020 21:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47218 * 2 1 4 4 O 1.42895 * 109.47388 * 120.00530 * 2 1 3 5 5 C 1.50710 * 109.46989 * 240.00337 * 2 1 3 6 6 O 1.21279 * 119.99909 * 244.99523 * 5 2 1 7 7 N 1.34780 * 119.99688 * 64.99463 * 5 2 1 8 8 C 1.47551 * 118.75102 * 359.97438 * 7 5 2 9 9 C 1.54110 * 112.09948 * 138.06282 * 8 7 5 10 10 C 1.50671 * 110.24851 * 319.32763 * 9 8 7 11 11 C 1.52993 * 109.83886 * 91.86968 * 10 9 8 12 12 C 1.55172 * 107.90882 * 152.34788 * 11 10 9 13 13 C 1.54545 * 101.80128 * 219.62017 * 12 11 10 14 14 N 1.46700 * 105.35610 * 26.20707 * 13 12 11 15 15 C 1.46505 * 124.33333 * 162.74317 * 14 13 12 16 16 C 1.52997 * 109.47212 * 269.72632 * 15 14 13 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 C 1.34260 * 111.33488 * 342.48020 * 14 13 12 26 26 O 1.21281 * 124.85397 * 180.43498 * 25 14 13 27 27 C 1.47354 * 113.97208 * 275.87271 * 11 10 9 28 28 C 1.44575 * 118.74341 * 179.97438 * 7 5 2 29 29 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47218 * 299.99597 * 1 2 3 31 31 H 1.08994 * 109.47443 * 59.99874 * 1 2 3 32 32 H 0.96694 * 114.00436 * 59.99690 * 4 2 1 33 33 H 1.09002 * 108.95339 * 258.73246 * 8 7 5 34 34 H 1.08994 * 108.95956 * 17.38265 * 8 7 5 35 35 H 1.08995 * 109.34300 * 79.54636 * 9 8 7 36 36 H 1.09007 * 109.33762 * 199.22420 * 9 8 7 37 37 H 1.09002 * 109.40462 * 331.76728 * 10 9 8 38 38 H 1.09002 * 109.41561 * 211.98437 * 10 9 8 39 39 H 1.08997 * 110.95112 * 337.98580 * 12 11 10 40 40 H 1.09003 * 110.94725 * 101.65481 * 12 11 10 41 41 H 1.09002 * 110.40325 * 267.18858 * 13 12 11 42 42 H 1.08996 * 110.18331 * 145.11514 * 13 12 11 43 43 H 1.09002 * 109.47068 * 29.72692 * 15 14 13 44 44 H 1.09001 * 109.47372 * 149.72780 * 15 14 13 45 45 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 46 46 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 47 47 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.23905 * 182.53778 * 27 11 10 49 49 H 1.09000 * 109.23390 * 301.96643 * 27 11 10 50 50 H 1.08999 * 109.43942 * 150.91812 * 28 7 5 51 51 H 1.08992 * 109.42555 * 30.99565 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7104 -1.2306 6 8 2.6530 -1.7466 -1.1217 7 7 1.7917 -0.1941 -2.4521 8 6 1.0334 1.0677 -2.5525 9 6 1.6338 2.0230 -3.6022 10 6 3.1385 2.0011 -3.5270 11 6 3.6914 0.9523 -4.4939 12 6 5.1134 1.4013 -4.9228 13 6 5.1231 1.0301 -6.4230 14 7 3.7172 1.0646 -6.8407 15 6 3.2708 1.1356 -8.2343 16 6 3.1237 2.6011 -8.6486 17 6 2.6651 2.6742 -10.0823 18 1 2.4952 1.7663 -10.6418 19 6 2.4615 3.9002 -10.6793 20 7 2.6681 5.0059 -9.9977 21 14 1.8938 3.9909 -12.4566 22 1 0.4095 4.0006 -12.5022 23 1 2.4162 5.2331 -13.0804 24 1 2.4041 2.8111 -13.2001 25 6 2.8920 1.0169 -5.7828 26 8 1.6809 1.0236 -5.8476 27 6 3.7177 -0.4144 -3.9436 28 6 2.2866 -0.8977 -3.6141 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7211 -1.5952 1.2328 33 1 0.0035 0.8408 -2.8283 34 1 1.0373 1.5615 -1.5809 35 1 1.3178 1.7105 -4.5974 36 1 1.2795 3.0363 -3.4125 37 1 3.4468 1.7552 -2.5109 38 1 3.5290 2.9828 -3.7954 39 1 5.2423 2.4744 -4.7819 40 1 5.8780 0.8446 -4.3809 41 1 5.5343 0.0307 -6.5645 42 1 5.7024 1.7607 -6.9874 43 1 4.0048 0.6485 -8.8762 44 1 2.3095 0.6316 -8.3341 45 1 2.3897 3.0882 -8.0067 46 1 4.0850 3.1052 -8.5489 47 1 2.5245 5.8684 -10.4176 48 1 4.1646 -1.0876 -4.6752 49 1 4.3176 -0.4236 -3.0336 50 1 1.6325 -0.7005 -4.4634 51 1 2.3033 -1.9681 -3.4098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269257228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:45 Heat of formation + Delta-G solvation = -118.242992 kcal Electronic energy + Delta-G solvation = -31646.173534 eV Core-core repulsion = 27545.395353 eV Total energy + Delta-G solvation = -4100.778181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.72621 -41.18130 -38.35422 -37.80877 -37.39327 -36.11780 -34.92088 -33.62562 -32.71462 -31.52770 -29.98267 -28.20766 -27.11586 -26.47088 -25.54433 -23.93257 -23.34510 -22.41821 -21.90010 -20.41372 -19.97428 -18.70442 -18.64583 -17.92830 -17.40724 -17.04204 -16.91054 -16.70560 -16.46066 -16.14483 -15.70934 -15.37906 -15.15880 -14.90639 -14.85900 -14.51412 -14.43023 -14.18801 -14.02277 -13.88633 -13.50917 -13.38981 -13.33471 -13.16128 -13.07862 -12.89692 -12.79476 -12.73063 -12.58164 -12.42775 -12.17720 -12.00216 -11.86417 -11.81639 -11.63527 -11.57864 -11.37239 -11.22191 -10.60233 -10.51683 -9.88437 -9.68425 -9.35991 -8.23882 -6.36216 1.39330 1.40833 1.48234 1.51375 1.56930 1.96455 2.13499 2.41120 3.09930 3.14398 3.25831 3.39500 3.42047 3.76501 3.88350 3.95731 3.98183 4.05246 4.08256 4.17649 4.28520 4.32386 4.38252 4.50766 4.53553 4.58623 4.66920 4.68654 4.72834 4.79799 4.80746 4.87858 4.91072 4.93136 4.98216 5.02832 5.10486 5.17923 5.19187 5.27966 5.30781 5.47051 5.51734 5.57108 5.78023 5.92857 6.15327 6.28525 6.42939 6.58950 6.79568 7.07156 7.25380 7.33765 8.87893 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.002659 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.120192 B =10525.953295 C =11003.353703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.092 3.908 3 H 0.138 0.862 4 O -0.555 6.555 5 C 0.477 3.523 6 O -0.576 6.576 7 N -0.588 5.588 8 C 0.117 3.883 9 C -0.237 4.237 10 C -0.088 4.088 11 C -0.076 4.076 12 C -0.120 4.120 13 C 0.092 3.908 14 N -0.612 5.612 15 C 0.141 3.859 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.966 3.034 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.259 1.259 25 C 0.507 3.493 26 O -0.540 6.540 27 C -0.101 4.101 28 C 0.109 3.891 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.390 0.610 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.058 0.942 45 H -0.022 1.022 46 H -0.002 1.002 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 -9.512 19.297 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.030 3.970 3 H 0.155 0.845 4 O -0.362 6.362 5 C 0.266 3.734 6 O -0.456 6.456 7 N -0.321 5.321 8 C -0.004 4.004 9 C -0.273 4.273 10 C -0.126 4.126 11 C -0.080 4.080 12 C -0.158 4.158 13 C -0.030 4.030 14 N -0.342 5.342 15 C 0.019 3.981 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.791 3.209 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.183 1.183 25 C 0.297 3.703 26 O -0.423 6.423 27 C -0.139 4.139 28 C -0.015 4.015 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.240 0.760 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.157 0.843 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.138 0.862 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.077 0.923 45 H -0.004 1.004 46 H 0.016 0.984 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.094 0.906 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.347 -9.289 19.291 21.453 hybrid contribution -0.623 0.140 -1.376 1.517 sum 0.724 -9.149 17.915 20.129 Atomic orbital electron populations 1.22600 0.92235 1.04009 1.05338 1.21970 0.95880 0.97218 0.81967 0.84493 1.86554 1.78047 1.30613 1.40963 1.22207 0.79333 0.85505 0.86337 1.90672 1.42473 1.25677 1.86825 1.47789 1.54412 1.24398 1.05478 1.22226 0.94581 0.82850 1.00788 1.23416 0.96278 0.99947 1.07658 1.21023 0.96094 0.96807 0.98628 1.20457 0.96189 0.98316 0.93008 1.23089 0.95520 1.03221 0.93953 1.22371 0.81150 1.03297 0.96163 1.48608 1.08603 1.70609 1.06386 1.21387 0.99482 0.97756 0.79463 1.19185 0.94860 0.92156 0.95023 1.21545 1.45755 0.92947 0.97961 0.91621 1.25970 0.95329 0.95346 1.02971 1.70107 1.49982 0.98145 1.38880 0.85427 0.78480 0.78058 0.78973 1.20144 1.20652 1.18268 1.21524 0.86879 0.74541 0.87369 1.90030 1.14804 1.53075 1.84360 1.20928 0.97630 0.93541 1.01837 1.21392 0.95111 0.96614 0.88398 0.91873 0.88988 0.89488 0.75970 0.91121 0.88025 0.84314 0.90873 0.90316 0.91848 0.89682 0.86203 0.88633 0.90425 0.89505 0.92318 1.00376 0.98401 0.92732 0.89716 0.89803 0.90619 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.13 71.98 0.66 -1.39 16 2 C 0.09 1.45 3.16 29.85 0.09 1.54 16 3 H 0.14 1.76 7.14 -2.39 -0.02 1.74 16 4 O -0.56 -10.32 12.99 -129.99 -1.69 -12.01 16 5 C 0.48 10.49 7.04 87.66 0.62 11.11 16 6 O -0.58 -16.75 15.77 15.96 0.25 -16.50 16 7 N -0.59 -12.50 2.25 -818.53 -1.84 -14.35 16 8 C 0.12 2.17 4.53 86.55 0.39 2.56 16 9 C -0.24 -5.79 5.49 30.21 0.17 -5.62 16 10 C -0.09 -1.98 4.64 29.84 0.14 -1.84 16 11 C -0.08 -1.80 0.50 -53.59 -0.03 -1.83 16 12 C -0.12 -2.34 6.17 31.86 0.20 -2.14 16 13 C 0.09 2.19 7.34 86.87 0.64 2.83 16 14 N -0.61 -20.48 2.93 -817.53 -2.39 -22.88 16 15 C 0.14 5.70 5.87 86.38 0.51 6.21 16 16 C 0.03 1.35 5.30 29.85 0.16 1.50 16 17 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 18 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 21 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 25 C 0.51 16.72 6.01 88.09 0.53 17.25 16 26 O -0.54 -21.19 12.07 -3.03 -0.04 -21.23 16 27 C -0.10 -2.17 4.41 29.38 0.13 -2.04 16 28 C 0.11 2.63 5.27 87.28 0.46 3.09 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.88 5.19 -2.39 -0.01 0.87 16 32 H 0.39 5.65 8.79 -74.06 -0.65 4.99 16 33 H 0.07 1.28 7.61 -2.39 -0.02 1.26 16 34 H 0.10 1.28 5.01 -2.39 -0.01 1.27 16 35 H 0.14 4.59 3.00 -112.62 -0.34 4.25 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.08 1.53 7.50 -2.39 -0.02 1.51 16 38 H 0.06 1.48 7.32 -2.39 -0.02 1.46 16 39 H 0.08 1.69 7.30 -2.39 -0.02 1.67 16 40 H 0.12 1.58 7.90 -2.39 -0.02 1.57 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.06 2.52 7.92 -2.39 -0.02 2.50 16 45 H -0.02 -1.34 8.14 -2.39 -0.02 -1.35 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 48 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 50 H 0.08 2.14 5.89 -2.39 -0.01 2.13 16 51 H 0.08 1.92 7.31 -2.39 -0.02 1.90 16 Total: -1.00 -74.52 384.92 1.92 -72.60 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.04 Total: 23.08 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.35 Total: 1.63 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.95 Total: -93.29 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -1.47 Total: -49.74 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -74.52 1.92 -72.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269257228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.643 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds