Wall clock time and date at job start Tue Mar 31 2020 21:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47026 * 2 1 4 4 O 1.42899 * 109.47547 * 120.00331 * 2 1 3 5 5 C 1.50699 * 109.47076 * 240.00296 * 2 1 3 6 6 O 1.21278 * 119.99990 * 254.16616 * 5 2 1 7 7 N 1.34983 * 119.99993 * 74.16148 * 5 2 1 8 8 C 1.49798 * 120.51995 * 355.14608 * 7 5 2 9 9 C 1.45970 * 108.86172 * 117.07592 * 8 7 5 10 10 C 1.51671 * 115.93570 * 55.36978 * 9 8 7 11 11 C 1.49441 * 109.66314 * 270.28351 * 10 9 8 12 12 C 1.55127 * 108.86907 * 207.03227 * 11 10 9 13 13 C 1.53950 * 103.24343 * 134.74540 * 12 11 10 14 14 N 1.46589 * 106.00130 * 341.60358 * 13 12 11 15 15 C 1.46458 * 124.58392 * 198.23522 * 14 13 12 16 16 C 1.53001 * 109.47052 * 89.99979 * 15 14 13 17 17 C 1.50704 * 109.47042 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00283 * 0.27627 * 17 16 15 19 19 C 1.37878 * 119.99663 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00353 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46926 * 90.00025 * 21 19 17 23 23 H 1.48504 * 109.47212 * 210.00345 * 21 19 17 24 24 H 1.48495 * 109.46885 * 330.00099 * 21 19 17 25 25 C 1.34592 * 110.87610 * 19.70789 * 14 13 12 26 26 O 1.21534 * 122.82016 * 165.18672 * 25 14 13 27 27 C 1.55044 * 112.10329 * 88.87407 * 11 10 9 28 28 C 1.43336 * 120.36405 * 175.76000 * 7 5 2 29 29 H 1.09005 * 109.47269 * 186.04486 * 1 2 3 30 30 H 1.08999 * 109.46972 * 306.04285 * 1 2 3 31 31 H 1.09001 * 109.47204 * 66.04707 * 1 2 3 32 32 H 0.96704 * 113.99273 * 299.99911 * 4 2 1 33 33 H 1.09213 * 109.63919 * 357.07804 * 8 7 5 34 34 H 1.09179 * 109.69392 * 237.13362 * 8 7 5 35 35 H 1.08059 * 109.93474 * 287.93879 * 9 8 7 36 36 H 1.10631 * 106.32495 * 174.17427 * 9 8 7 37 37 H 1.10017 * 109.54212 * 150.33734 * 10 9 8 38 38 H 1.09537 * 110.45282 * 31.91562 * 10 9 8 39 39 H 1.09172 * 110.28883 * 15.91448 * 12 11 10 40 40 H 1.09073 * 110.44907 * 253.73322 * 12 11 10 41 41 H 1.09126 * 110.43884 * 222.25258 * 13 12 11 42 42 H 1.09241 * 110.34615 * 100.73930 * 13 12 11 43 43 H 1.09006 * 109.47177 * 330.00179 * 15 14 13 44 44 H 1.08998 * 109.47764 * 210.00123 * 15 14 13 45 45 H 1.09001 * 109.46998 * 60.00537 * 16 15 14 46 46 H 1.08996 * 109.47477 * 300.00094 * 16 15 14 47 47 H 0.97001 * 120.00344 * 179.97438 * 20 19 17 48 48 H 1.09076 * 109.22943 * 96.16893 * 27 11 10 49 49 H 1.09236 * 108.77012 * 214.79956 * 27 11 10 50 50 H 1.09444 * 107.61181 * 32.12866 * 28 7 5 51 51 H 1.08922 * 108.50797 * 147.85055 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2305 6 8 2.5046 -1.8235 -1.1377 7 7 1.9565 -0.1077 -2.4359 8 6 1.2781 1.2200 -2.5813 9 6 2.2594 2.2052 -3.0254 10 6 3.0122 1.8649 -4.2973 11 6 4.2508 1.1002 -3.9592 12 6 5.3086 1.3430 -5.0677 13 6 6.5987 1.6110 -4.2714 14 7 6.1706 1.9556 -2.9125 15 6 7.0065 2.6455 -1.9274 16 6 6.8096 4.1569 -2.0605 17 6 7.6702 4.8667 -1.0472 18 1 8.2984 4.2971 -0.3786 19 6 7.6603 6.2437 -0.9782 20 7 6.8994 6.9377 -1.7961 21 14 8.7276 7.1237 0.2773 22 1 10.0573 7.4110 -0.3180 23 1 8.0768 8.3983 0.6737 24 1 8.8969 6.2613 1.4742 25 6 4.9168 1.5246 -2.6808 26 8 4.4396 1.4554 -1.5651 27 6 3.9959 -0.4281 -3.9036 28 6 2.5134 -0.7371 -3.5970 29 1 -0.3634 -1.0220 0.1082 30 1 -0.3633 0.6047 0.8309 31 1 -0.3634 0.4172 -0.9392 32 1 1.7211 -0.2701 1.9979 33 1 0.8591 1.5253 -1.6201 34 1 0.4742 1.1438 -3.3162 35 1 2.9370 2.4403 -2.2172 36 1 1.6971 3.1376 -3.2212 37 1 3.2890 2.7923 -4.8204 38 1 2.3786 1.2792 -4.9721 39 1 5.0317 2.2090 -5.6720 40 1 5.4101 0.4586 -5.6979 41 1 7.1539 2.4400 -4.7132 42 1 7.2253 0.7163 -4.2512 43 1 8.0536 2.3986 -2.1028 44 1 6.7218 2.3290 -0.9239 45 1 5.7626 4.4038 -1.8850 46 1 7.0943 4.4734 -3.0639 47 1 6.8921 7.9065 -1.7473 48 1 4.2694 -0.8730 -4.8613 49 1 4.6242 -0.8611 -3.1219 50 1 2.4160 -1.8193 -3.4658 51 1 1.9115 -0.4615 -4.4620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269257229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:49 Heat of formation + Delta-G solvation = -109.865704 kcal Electronic energy + Delta-G solvation = -32148.938914 eV Core-core repulsion = 28048.523999 eV Total energy + Delta-G solvation = -4100.414915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21199 -39.78675 -37.34524 -36.45429 -36.03162 -34.56379 -33.07894 -32.75129 -31.43344 -30.33927 -28.52995 -27.27299 -25.93993 -25.04397 -24.49026 -22.42706 -22.01635 -21.61544 -20.27027 -18.90517 -18.28341 -17.84904 -16.83748 -16.53519 -16.28217 -15.85036 -15.46583 -15.44087 -15.06725 -14.58182 -14.51843 -14.42758 -14.06528 -13.79833 -13.44907 -13.29242 -13.03287 -12.90674 -12.71149 -12.64403 -12.47526 -12.36399 -12.13486 -12.03297 -11.74091 -11.65774 -11.61672 -11.24723 -10.97192 -10.90280 -10.77009 -10.71264 -10.52642 -10.34415 -10.18619 -9.96405 -9.86801 -9.49227 -9.30802 -8.97616 -8.61592 -8.40749 -7.94137 -6.06121 -4.09269 2.64456 2.93393 3.03868 3.28977 3.35211 3.39278 3.60151 4.12525 4.30587 4.42697 4.46574 4.52368 4.66504 4.76538 4.82283 4.93546 4.99950 5.05742 5.07512 5.15561 5.23343 5.30299 5.37565 5.42716 5.44382 5.46818 5.58201 5.66165 5.76045 5.77551 5.81779 5.83280 5.88249 5.90120 6.01339 6.07195 6.12029 6.23964 6.49751 6.53624 6.63939 6.80426 7.07360 7.32549 7.52692 7.58028 7.64920 7.86778 7.94199 8.30958 8.31496 8.70493 8.97430 9.55065 11.05190 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.003610 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.701397 B = 7754.494180 C = 8873.584460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.087 0.913 4 O -0.542 6.542 5 C 0.536 3.464 6 O -0.527 6.527 7 N -0.597 5.597 8 C 0.120 3.880 9 C -0.169 4.169 10 C -0.085 4.085 11 C -0.086 4.086 12 C -0.131 4.131 13 C 0.100 3.900 14 N -0.614 5.614 15 C 0.129 3.871 16 C 0.016 3.984 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.528 3.472 26 O -0.524 6.524 27 C -0.115 4.115 28 C 0.120 3.880 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.381 0.619 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.261 0.739 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 -12.136 -7.720 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.025 3.975 3 H 0.105 0.895 4 O -0.347 6.347 5 C 0.324 3.676 6 O -0.402 6.402 7 N -0.332 5.332 8 C -0.001 4.001 9 C -0.207 4.207 10 C -0.123 4.123 11 C -0.089 4.089 12 C -0.169 4.169 13 C -0.024 4.024 14 N -0.347 5.347 15 C 0.009 3.991 16 C -0.022 4.022 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.316 3.684 26 O -0.401 6.401 27 C -0.154 4.154 28 C -0.004 4.004 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.228 0.772 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.102 0.898 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.399 -12.938 -7.499 20.078 hybrid contribution 0.558 1.298 0.895 1.672 sum -12.840 -11.640 -6.605 18.547 Atomic orbital electron populations 1.22585 0.94677 1.03658 1.03492 1.21542 0.93570 0.96360 0.86054 0.89535 1.86610 1.76695 1.56488 1.14885 1.20061 0.78021 0.85658 0.83891 1.90663 1.44679 1.19500 1.85398 1.47686 1.56916 1.21278 1.07312 1.21110 0.94676 0.82039 1.02263 1.20798 1.00879 0.98633 1.00373 1.20663 0.94595 0.99970 0.97069 1.20901 0.96549 0.96896 0.94566 1.23066 0.94059 1.03040 0.96695 1.21883 0.96661 1.00671 0.83140 1.48547 1.15153 1.57039 1.13942 1.21762 0.92232 0.94949 0.90159 1.19377 0.97606 0.87932 0.97306 1.21100 1.25124 0.91497 1.18343 0.92495 1.24982 0.95625 0.97606 0.95941 1.69968 1.39135 1.06538 1.37606 0.86563 0.80399 0.79130 0.81756 1.20610 1.21162 1.19759 1.20273 0.82062 0.76394 0.89717 1.90671 1.70532 1.54491 1.24423 1.22757 0.97386 0.92792 1.02461 1.20778 0.93641 0.98391 0.87631 0.91186 0.91085 0.90731 0.77197 0.89440 0.91179 0.87923 0.91800 0.90910 0.90672 0.89889 0.89704 0.90275 0.92026 0.91941 0.91016 0.96370 0.96532 0.92961 0.89820 0.91488 0.90769 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 9.07 37.16 0.34 -1.33 16 2 C 0.09 1.15 3.14 -27.88 -0.09 1.06 16 3 H 0.09 1.16 7.33 -51.93 -0.38 0.78 16 4 O -0.54 -7.88 12.89 -54.73 -0.71 -8.59 16 5 C 0.54 8.51 7.01 -10.89 -0.08 8.44 16 6 O -0.53 -10.53 16.09 -13.94 -0.22 -10.75 16 7 N -0.60 -7.60 2.75 -175.94 -0.48 -8.09 16 8 C 0.12 1.20 5.11 -5.53 -0.03 1.17 16 9 C -0.17 -2.03 4.67 -30.74 -0.14 -2.18 16 10 C -0.09 -0.93 4.59 -29.16 -0.13 -1.07 16 11 C -0.09 -1.10 0.67 -155.42 -0.10 -1.20 16 12 C -0.13 -1.41 6.20 -25.11 -0.16 -1.56 16 13 C 0.10 1.38 7.34 -3.50 -0.03 1.35 16 14 N -0.61 -11.24 2.94 -173.08 -0.51 -11.75 16 15 C 0.13 2.78 5.93 -4.06 -0.02 2.76 16 16 C 0.02 0.41 5.30 -27.88 -0.15 0.26 16 17 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 21 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.53 9.51 5.64 -11.28 -0.06 9.44 16 26 O -0.52 -11.07 14.93 5.34 0.08 -11.00 16 27 C -0.11 -1.36 5.57 -24.86 -0.14 -1.50 16 28 C 0.12 1.37 4.84 -4.92 -0.02 1.34 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.56 6.00 -51.93 -0.31 0.25 16 32 H 0.38 3.41 9.08 45.56 0.41 3.82 16 33 H 0.09 0.80 4.55 -51.81 -0.24 0.56 16 34 H 0.07 0.51 8.16 -51.83 -0.42 0.08 16 35 H 0.10 1.69 4.72 -52.45 -0.25 1.44 16 36 H 0.06 0.67 8.23 -50.99 -0.42 0.25 16 37 H 0.07 0.80 7.38 -51.35 -0.38 0.42 16 38 H 0.07 0.63 6.36 -51.62 -0.33 0.30 16 39 H 0.08 0.83 7.25 -51.83 -0.38 0.45 16 40 H 0.08 0.68 7.03 -51.89 -0.36 0.32 16 41 H 0.08 1.09 8.15 -51.86 -0.42 0.67 16 42 H 0.06 0.75 8.16 -51.79 -0.42 0.33 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.66 7.73 -51.93 -0.40 1.26 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.08 0.74 7.04 -51.89 -0.37 0.37 16 49 H 0.07 1.03 7.65 -51.80 -0.40 0.63 16 50 H 0.07 0.92 7.31 -51.68 -0.38 0.55 16 51 H 0.07 0.61 6.63 -51.97 -0.34 0.26 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -37.69 388.93 -8.93 -46.62 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.44 Total: 3.38 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.23 Total: 3.58 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.26 Total: -45.63 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.85 Total: -30.34 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.69 -8.93 -46.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269257229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.247 kcal (2) G-P(sol) polarization free energy of solvation -37.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds