Wall clock time and date at job start Tue Mar 31 2020 21:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47026 * 2 1 4 4 O 1.42899 * 109.47547 * 120.00331 * 2 1 3 5 5 C 1.50699 * 109.47076 * 240.00296 * 2 1 3 6 6 O 1.21278 * 119.99990 * 254.16616 * 5 2 1 7 7 N 1.34983 * 119.99993 * 74.16148 * 5 2 1 8 8 C 1.49798 * 120.51995 * 355.14608 * 7 5 2 9 9 C 1.45970 * 108.86172 * 117.07592 * 8 7 5 10 10 C 1.51671 * 115.93570 * 55.36978 * 9 8 7 11 11 C 1.49441 * 109.66314 * 270.28351 * 10 9 8 12 12 C 1.55127 * 108.86907 * 207.03227 * 11 10 9 13 13 C 1.53950 * 103.24343 * 134.74540 * 12 11 10 14 14 N 1.46589 * 106.00130 * 341.60358 * 13 12 11 15 15 C 1.46458 * 124.58392 * 198.23522 * 14 13 12 16 16 C 1.53001 * 109.47052 * 89.99979 * 15 14 13 17 17 C 1.50704 * 109.47042 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00283 * 0.27627 * 17 16 15 19 19 C 1.37878 * 119.99663 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00353 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46926 * 90.00025 * 21 19 17 23 23 H 1.48504 * 109.47212 * 210.00345 * 21 19 17 24 24 H 1.48495 * 109.46885 * 330.00099 * 21 19 17 25 25 C 1.34592 * 110.87610 * 19.70789 * 14 13 12 26 26 O 1.21534 * 122.82016 * 165.18672 * 25 14 13 27 27 C 1.55044 * 112.10329 * 88.87407 * 11 10 9 28 28 C 1.43336 * 120.36405 * 175.76000 * 7 5 2 29 29 H 1.09005 * 109.47269 * 186.04486 * 1 2 3 30 30 H 1.08999 * 109.46972 * 306.04285 * 1 2 3 31 31 H 1.09001 * 109.47204 * 66.04707 * 1 2 3 32 32 H 0.96704 * 113.99273 * 299.99911 * 4 2 1 33 33 H 1.09213 * 109.63919 * 357.07804 * 8 7 5 34 34 H 1.09179 * 109.69392 * 237.13362 * 8 7 5 35 35 H 1.08059 * 109.93474 * 287.93879 * 9 8 7 36 36 H 1.10631 * 106.32495 * 174.17427 * 9 8 7 37 37 H 1.10017 * 109.54212 * 150.33734 * 10 9 8 38 38 H 1.09537 * 110.45282 * 31.91562 * 10 9 8 39 39 H 1.09172 * 110.28883 * 15.91448 * 12 11 10 40 40 H 1.09073 * 110.44907 * 253.73322 * 12 11 10 41 41 H 1.09126 * 110.43884 * 222.25258 * 13 12 11 42 42 H 1.09241 * 110.34615 * 100.73930 * 13 12 11 43 43 H 1.09006 * 109.47177 * 330.00179 * 15 14 13 44 44 H 1.08998 * 109.47764 * 210.00123 * 15 14 13 45 45 H 1.09001 * 109.46998 * 60.00537 * 16 15 14 46 46 H 1.08996 * 109.47477 * 300.00094 * 16 15 14 47 47 H 0.97001 * 120.00344 * 179.97438 * 20 19 17 48 48 H 1.09076 * 109.22943 * 96.16893 * 27 11 10 49 49 H 1.09236 * 108.77012 * 214.79956 * 27 11 10 50 50 H 1.09444 * 107.61181 * 32.12866 * 28 7 5 51 51 H 1.08922 * 108.50797 * 147.85055 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2305 6 8 2.5046 -1.8235 -1.1377 7 7 1.9565 -0.1077 -2.4359 8 6 1.2781 1.2200 -2.5813 9 6 2.2594 2.2052 -3.0254 10 6 3.0122 1.8649 -4.2973 11 6 4.2508 1.1002 -3.9592 12 6 5.3086 1.3430 -5.0677 13 6 6.5987 1.6110 -4.2714 14 7 6.1706 1.9556 -2.9125 15 6 7.0065 2.6455 -1.9274 16 6 6.8096 4.1569 -2.0605 17 6 7.6702 4.8667 -1.0472 18 1 8.2984 4.2971 -0.3786 19 6 7.6603 6.2437 -0.9782 20 7 6.8994 6.9377 -1.7961 21 14 8.7276 7.1237 0.2773 22 1 10.0573 7.4110 -0.3180 23 1 8.0768 8.3983 0.6737 24 1 8.8969 6.2613 1.4742 25 6 4.9168 1.5246 -2.6808 26 8 4.4396 1.4554 -1.5651 27 6 3.9959 -0.4281 -3.9036 28 6 2.5134 -0.7371 -3.5970 29 1 -0.3634 -1.0220 0.1082 30 1 -0.3633 0.6047 0.8309 31 1 -0.3634 0.4172 -0.9392 32 1 1.7211 -0.2701 1.9979 33 1 0.8591 1.5253 -1.6201 34 1 0.4742 1.1438 -3.3162 35 1 2.9370 2.4403 -2.2172 36 1 1.6971 3.1376 -3.2212 37 1 3.2890 2.7923 -4.8204 38 1 2.3786 1.2792 -4.9721 39 1 5.0317 2.2090 -5.6720 40 1 5.4101 0.4586 -5.6979 41 1 7.1539 2.4400 -4.7132 42 1 7.2253 0.7163 -4.2512 43 1 8.0536 2.3986 -2.1028 44 1 6.7218 2.3290 -0.9239 45 1 5.7626 4.4038 -1.8850 46 1 7.0943 4.4734 -3.0639 47 1 6.8921 7.9065 -1.7473 48 1 4.2694 -0.8730 -4.8613 49 1 4.6242 -0.8611 -3.1219 50 1 2.4160 -1.8193 -3.4658 51 1 1.9115 -0.4615 -4.4620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269257229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:48 Heat of formation + Delta-G solvation = -137.630299 kcal Electronic energy + Delta-G solvation = -32150.142877 eV Core-core repulsion = 28048.523999 eV Total energy + Delta-G solvation = -4101.618878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33799 -40.95734 -38.45709 -37.60558 -37.42047 -36.08554 -34.85637 -33.70999 -32.75940 -31.66685 -29.91897 -28.27279 -27.18345 -26.55054 -25.59032 -23.71021 -23.40604 -22.64083 -21.68803 -19.97384 -19.55426 -18.90165 -18.70514 -17.71902 -17.41371 -17.18354 -16.75934 -16.64349 -16.48680 -16.22971 -15.63968 -15.42018 -15.14881 -15.04417 -14.56233 -14.53836 -14.42000 -14.30921 -13.95116 -13.73225 -13.66519 -13.52098 -13.33071 -13.26570 -12.98786 -12.88747 -12.74068 -12.62430 -12.57898 -12.40948 -11.99459 -11.88055 -11.80250 -11.67339 -11.44646 -11.43367 -11.28691 -11.19683 -10.64369 -10.62143 -10.35356 -9.62821 -9.45618 -8.26281 -6.38735 1.37155 1.38844 1.50005 1.51835 1.67271 1.98811 2.19587 2.40631 3.06989 3.21953 3.27555 3.49235 3.58182 3.73165 3.87133 3.97739 4.03602 4.10929 4.13975 4.16151 4.22596 4.27678 4.38101 4.43903 4.59504 4.62470 4.65633 4.68832 4.70967 4.76332 4.82711 4.83922 4.91455 4.93378 4.99649 5.05256 5.11957 5.13567 5.22704 5.31058 5.34565 5.45777 5.54629 5.63885 5.72678 5.83337 6.14225 6.30738 6.40647 6.75194 6.75299 7.19846 7.29643 7.31821 8.85497 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.003610 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.701397 B = 7754.494180 C = 8873.584460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.083 3.917 3 H 0.077 0.923 4 O -0.574 6.574 5 C 0.521 3.479 6 O -0.584 6.584 7 N -0.591 5.591 8 C 0.117 3.883 9 C -0.170 4.170 10 C -0.086 4.086 11 C -0.079 4.079 12 C -0.118 4.118 13 C 0.090 3.910 14 N -0.629 5.629 15 C 0.145 3.855 16 C 0.033 3.967 17 C -0.549 4.549 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.268 1.268 25 C 0.511 3.489 26 O -0.567 6.567 27 C -0.107 4.107 28 C 0.109 3.891 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.400 0.600 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.044 0.956 45 H -0.022 1.022 46 H 0.002 0.998 47 H 0.266 0.734 48 H 0.127 0.873 49 H 0.020 0.980 50 H 0.059 0.941 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.883 -11.967 -10.163 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.021 3.979 3 H 0.095 0.905 4 O -0.382 6.382 5 C 0.310 3.690 6 O -0.464 6.464 7 N -0.324 5.324 8 C -0.003 4.003 9 C -0.208 4.208 10 C -0.124 4.124 11 C -0.082 4.082 12 C -0.155 4.155 13 C -0.033 4.033 14 N -0.362 5.362 15 C 0.023 3.977 16 C -0.005 4.005 17 C -0.587 4.587 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.567 5.567 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.192 1.192 25 C 0.300 3.700 26 O -0.447 6.447 27 C -0.146 4.146 28 C -0.014 4.014 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.250 0.750 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.115 0.885 40 H 0.144 0.856 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.063 0.937 45 H -0.004 1.004 46 H 0.020 0.980 47 H 0.074 0.926 48 H 0.145 0.855 49 H 0.040 0.960 50 H 0.078 0.922 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.601 -12.742 -9.989 21.802 hybrid contribution 0.949 1.301 1.676 2.324 sum -13.652 -11.441 -8.313 19.657 Atomic orbital electron populations 1.22512 0.90992 1.03937 1.05627 1.21658 0.96375 0.95007 0.84818 0.90509 1.86555 1.77700 1.57541 1.16413 1.20673 0.77482 0.85321 0.85564 1.90615 1.47447 1.21938 1.86407 1.47850 1.55991 1.21777 1.06780 1.21391 0.94936 0.79994 1.03991 1.20750 1.00479 1.00192 0.99348 1.20789 0.94024 1.00515 0.97038 1.20927 0.97754 0.97564 0.91973 1.23158 0.90964 1.05540 0.95864 1.22224 0.98815 1.01212 0.81003 1.48676 1.15386 1.56826 1.15288 1.21235 0.93655 0.92538 0.90294 1.19125 0.94645 0.90797 0.95910 1.21513 1.25740 0.92387 1.19099 0.92251 1.25918 0.96879 0.98386 0.97956 1.70086 1.40415 1.07045 1.39158 0.85432 0.78795 0.77739 0.79002 1.19169 1.20483 1.19234 1.21411 0.81943 0.75441 0.91166 1.90644 1.71257 1.55969 1.26808 1.22798 0.97023 0.91792 1.03030 1.21041 0.94083 0.97737 0.88573 0.91825 0.88651 0.88775 0.74962 0.89021 0.86503 0.93117 0.90182 0.90791 0.86296 0.88490 0.85592 0.90568 0.90337 0.90455 0.93695 1.00374 0.98011 0.92568 0.85544 0.96047 0.92211 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.07 71.98 0.65 -2.25 16 2 C 0.08 2.29 3.14 29.85 0.09 2.38 16 3 H 0.08 2.20 7.33 -2.39 -0.02 2.19 16 4 O -0.57 -17.76 12.89 -130.33 -1.68 -19.44 16 5 C 0.52 17.11 7.01 87.62 0.61 17.73 16 6 O -0.58 -24.71 16.09 15.62 0.25 -24.45 16 7 N -0.59 -14.47 2.75 -828.81 -2.28 -16.75 16 8 C 0.12 2.05 5.11 83.58 0.43 2.48 16 9 C -0.17 -3.85 4.67 28.00 0.13 -3.72 16 10 C -0.09 -1.61 4.59 29.02 0.13 -1.48 16 11 C -0.08 -1.88 0.67 -52.77 -0.04 -1.91 16 12 C -0.12 -2.14 6.20 31.64 0.20 -1.94 16 13 C 0.09 2.37 7.34 86.68 0.64 3.00 16 14 N -0.63 -23.86 2.94 -819.89 -2.41 -26.27 16 15 C 0.14 6.60 5.93 86.39 0.51 7.11 16 16 C 0.03 1.82 5.30 29.85 0.16 1.97 16 17 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 19 C 0.01 0.42 5.46 84.66 0.46 0.88 16 20 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 21 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 C 0.51 19.08 5.64 87.55 0.49 19.58 16 26 O -0.57 -25.82 14.93 -3.82 -0.06 -25.88 16 27 C -0.11 -2.34 5.57 31.81 0.18 -2.16 16 28 C 0.11 2.24 4.84 87.48 0.42 2.66 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.18 6.00 -2.39 -0.01 1.17 16 32 H 0.40 7.70 9.08 -74.05 -0.67 7.02 16 33 H 0.09 1.53 4.55 -2.27 -0.01 1.52 16 34 H 0.12 1.06 8.16 -2.29 -0.02 1.05 16 35 H 0.05 1.74 4.72 -2.88 -0.01 1.73 16 36 H 0.08 1.53 8.23 -1.51 -0.01 1.52 16 37 H 0.07 1.39 7.38 -1.84 -0.01 1.38 16 38 H 0.12 1.24 6.36 -2.10 -0.01 1.22 16 39 H 0.10 1.55 7.25 -2.30 -0.02 1.53 16 40 H 0.13 1.31 7.03 -2.35 -0.02 1.29 16 41 H 0.08 2.04 8.15 -2.32 -0.02 2.02 16 42 H 0.08 1.79 8.16 -2.26 -0.02 1.77 16 43 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 44 H 0.04 2.25 7.73 -2.39 -0.02 2.23 16 45 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 46 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 48 H 0.13 1.64 7.04 -2.35 -0.02 1.62 16 49 H 0.02 0.65 7.65 -2.26 -0.02 0.64 16 50 H 0.06 1.43 7.31 -2.15 -0.02 1.41 16 51 H 0.12 1.33 6.63 -2.43 -0.02 1.32 16 Total: -1.00 -91.10 388.93 1.74 -89.36 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.29 Total: 20.20 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 5.31 Total: 12.59 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -4.40 Total: -98.95 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -1.49 Total: -69.77 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -91.10 1.74 -89.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269257229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.266 kcal (2) G-P(sol) polarization free energy of solvation -91.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds