Wall clock time and date at job start Tue Mar 31 2020 21:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00118 * 2 1 4 4 H 1.08999 * 109.46986 * 329.99533 * 3 2 1 5 5 C 1.52994 * 109.47493 * 89.99777 * 3 2 1 6 6 C 1.50706 * 109.46886 * 210.00014 * 3 2 1 7 7 O 1.21282 * 119.99766 * 344.53218 * 6 3 2 8 8 N 1.34773 * 119.99768 * 164.53382 * 6 3 2 9 9 C 1.46935 * 120.60945 * 4.11677 * 8 6 3 10 10 C 1.53703 * 108.49833 * 125.81697 * 9 8 6 11 11 C 1.52511 * 109.36070 * 54.02665 * 10 9 8 12 12 C 1.54197 * 109.96486 * 178.11208 * 11 10 9 13 13 C 1.54572 * 101.66323 * 216.76193 * 12 11 10 14 14 N 1.46815 * 105.49061 * 25.03704 * 13 12 11 15 15 C 1.46496 * 124.35987 * 163.06282 * 14 13 12 16 16 C 1.53003 * 109.47090 * 90.00109 * 15 14 13 17 17 C 1.50697 * 109.47156 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00229 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00561 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99721 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47367 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47252 * 120.00071 * 21 19 17 24 24 H 1.48504 * 109.47023 * 240.00093 * 21 19 17 25 25 C 1.34563 * 111.27515 * 343.06764 * 14 13 12 26 26 O 1.21284 * 125.01284 * 180.70723 * 25 14 13 27 27 C 1.52503 * 110.83275 * 299.91546 * 11 10 9 28 28 C 1.46936 * 120.60352 * 184.39542 * 8 6 3 29 29 H 1.08995 * 109.47620 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47511 * 300.00191 * 1 2 3 31 31 H 1.08999 * 109.47397 * 60.00583 * 1 2 3 32 32 H 1.09007 * 109.47110 * 61.35497 * 5 3 2 33 33 H 1.09001 * 109.47260 * 181.35300 * 5 3 2 34 34 H 1.09000 * 109.47251 * 301.35686 * 5 3 2 35 35 H 1.08994 * 109.59268 * 245.63782 * 9 8 6 36 36 H 1.09004 * 109.58959 * 6.09153 * 9 8 6 37 37 H 1.09001 * 109.61696 * 294.00298 * 10 9 8 38 38 H 1.09000 * 109.41871 * 173.93079 * 10 9 8 39 39 H 1.09007 * 110.98686 * 334.85613 * 12 11 10 40 40 H 1.09002 * 110.98803 * 98.66552 * 12 11 10 41 41 H 1.09007 * 110.24085 * 144.04546 * 13 12 11 42 42 H 1.09002 * 110.24237 * 265.94211 * 13 12 11 43 43 H 1.09002 * 109.47466 * 209.99823 * 15 14 13 44 44 H 1.08999 * 109.47399 * 330.00189 * 15 14 13 45 45 H 1.08993 * 109.46855 * 299.99985 * 16 15 14 46 46 H 1.08999 * 109.46934 * 59.99795 * 16 15 14 47 47 H 0.96995 * 120.00574 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.47401 * 299.97936 * 27 11 10 49 49 H 1.08997 * 109.47639 * 179.97438 * 27 11 10 50 50 H 1.09000 * 109.59724 * 353.91639 * 28 8 6 51 51 H 1.09003 * 109.58978 * 114.21793 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4424 6 6 3.3386 1.2638 -0.7104 7 8 3.8798 0.1993 -0.9224 8 7 3.9252 2.4094 -1.1102 9 6 3.3268 3.7106 -0.7817 10 6 4.3868 4.5703 -0.0747 11 6 5.6400 4.6414 -0.9409 12 6 6.6960 5.5399 -0.2663 13 6 7.3299 6.2469 -1.4860 14 7 6.2993 6.2246 -2.5314 15 6 6.3129 7.0753 -3.7240 16 6 7.0617 6.3614 -4.8512 17 6 7.0751 7.2361 -6.0782 18 1 6.5977 8.2047 -6.0562 19 6 7.6969 6.8000 -7.2290 20 7 8.2787 5.6209 -7.2557 21 14 7.7141 7.8847 -8.7497 22 1 6.9966 9.1526 -8.4616 23 1 9.1184 8.1850 -9.1277 24 1 7.0404 7.1786 -9.8690 25 6 5.3407 5.3223 -2.2529 26 8 4.3787 5.0902 -2.9540 27 6 6.2154 3.2490 -1.1776 28 6 5.1716 2.3800 -1.8877 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 2.9019 1.0909 1.9493 33 1 2.6387 2.7768 1.4425 34 1 1.2601 1.7785 1.9632 35 1 3.0022 4.2052 -1.6971 36 1 2.4728 3.5636 -0.1203 37 1 4.6357 4.1254 0.8887 38 1 3.9942 5.5754 0.0796 39 1 6.2255 6.2611 0.4021 40 1 7.4354 4.9414 0.2659 41 1 7.5888 7.2752 -1.2333 42 1 8.2164 5.7058 -1.8168 43 1 5.2888 7.2764 -4.0386 44 1 6.8136 8.0157 -3.4939 45 1 8.0857 6.1603 -4.5367 46 1 6.5610 5.4209 -5.0813 47 1 8.7157 5.3140 -8.0654 48 1 6.4755 2.7959 -0.2210 49 1 7.1082 3.3254 -1.7982 50 1 5.5354 1.3548 -1.9567 51 1 4.9873 2.7705 -2.8886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269773699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:29 Heat of formation + Delta-G solvation = -137.288861 kcal Electronic energy + Delta-G solvation = -31170.594780 eV Core-core repulsion = 27068.990708 eV Total energy + Delta-G solvation = -4101.604072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37636 -41.01517 -38.79417 -37.85925 -37.46919 -35.86758 -34.59401 -33.25353 -32.12330 -31.51465 -29.86192 -27.76711 -27.38147 -26.76273 -25.24058 -24.28217 -23.66623 -23.05507 -21.88659 -20.68954 -19.42945 -18.72171 -18.62318 -17.80646 -17.17293 -17.12898 -16.76444 -16.56928 -16.49010 -16.02472 -15.84167 -15.59876 -15.30979 -14.92418 -14.61518 -14.53875 -14.45980 -14.31318 -14.16565 -14.00194 -13.69289 -13.43089 -13.31165 -13.27367 -13.02990 -12.96426 -12.83185 -12.77767 -12.63173 -12.35012 -12.27583 -12.11750 -11.96045 -11.83664 -11.58866 -11.51031 -11.38994 -10.99920 -10.64223 -10.58316 -10.43865 -9.62967 -9.50432 -8.25827 -6.38695 1.36890 1.38418 1.45453 1.51344 1.66030 1.72675 2.18729 2.40353 2.87997 3.07944 3.26102 3.38252 3.46764 3.68154 3.82727 3.92764 3.99540 4.02898 4.04348 4.26603 4.32248 4.34592 4.44589 4.46756 4.52876 4.54693 4.61722 4.64929 4.66257 4.70949 4.75166 4.81623 4.82895 4.84205 4.88636 4.93457 4.97958 5.05771 5.16534 5.21944 5.28765 5.34460 5.43530 5.45819 5.61272 5.83141 6.04098 6.14135 6.35628 6.39340 6.77821 7.06317 7.29573 7.32521 8.86359 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.002693 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.355560 B =10393.209811 C =11194.220541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.398 6.398 3 C 0.071 3.929 4 H 0.105 0.895 5 C -0.166 4.166 6 C 0.507 3.493 7 O -0.579 6.579 8 N -0.595 5.595 9 C 0.085 3.915 10 C -0.104 4.104 11 C -0.087 4.087 12 C -0.105 4.105 13 C 0.090 3.910 14 N -0.619 5.619 15 C 0.144 3.856 16 C 0.024 3.976 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.283 1.283 25 C 0.507 3.493 26 O -0.571 6.571 27 C -0.103 4.103 28 C 0.110 3.890 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.089 0.911 45 H -0.003 1.003 46 H -0.029 1.029 47 H 0.264 0.736 48 H 0.108 0.892 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.930 -0.907 25.183 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.010 3.990 4 H 0.122 0.878 5 C -0.223 4.223 6 C 0.296 3.704 7 O -0.458 6.458 8 N -0.328 5.328 9 C -0.037 4.037 10 C -0.142 4.142 11 C -0.091 4.091 12 C -0.143 4.143 13 C -0.032 4.032 14 N -0.351 5.351 15 C 0.022 3.978 16 C -0.014 4.014 17 C -0.581 4.581 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.209 1.209 25 C 0.296 3.704 26 O -0.451 6.451 27 C -0.141 4.141 28 C -0.013 4.013 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.015 0.985 46 H -0.011 1.011 47 H 0.072 0.928 48 H 0.126 0.874 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.930 -1.783 24.544 26.927 hybrid contribution 0.230 0.161 -2.063 2.082 sum -10.700 -1.622 22.481 24.950 Atomic orbital electron populations 1.23104 0.78582 1.04248 1.01498 1.88001 1.21986 1.26434 1.95243 1.22084 0.91613 0.86766 0.98514 0.87780 1.22315 1.04729 1.02792 0.92470 1.21158 0.87643 0.83080 0.78542 1.90663 1.66152 1.31201 1.57833 1.48016 1.24877 1.06528 1.53394 1.22432 0.97304 0.82205 1.01722 1.21880 0.92159 1.01727 0.98442 1.21065 0.99266 0.95727 0.92995 1.22785 0.97370 0.98341 0.95761 1.22395 0.90541 1.03295 0.86996 1.48690 1.24754 1.38835 1.22832 1.21317 1.00038 0.92954 0.83504 1.19203 0.94128 0.94560 0.93487 1.21588 1.35376 1.03643 0.97470 0.91441 1.26030 0.94721 0.96536 1.02627 1.70120 1.37256 1.20640 1.29334 0.85340 0.78191 0.78953 0.78211 1.18039 1.19928 1.20910 1.21378 0.81587 0.79212 0.88216 1.90614 1.31846 1.66212 1.56378 1.21702 0.96998 0.92639 1.02757 1.21472 0.84882 1.00972 0.94024 0.88526 0.91288 0.93344 0.92287 0.88426 0.88720 0.91220 0.86401 0.87137 0.88320 0.86845 0.86362 0.88290 0.92054 0.92775 0.89270 0.98456 1.01089 0.92767 0.87392 0.91223 0.90475 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.40 -9.54 9.93 -130.41 -1.29 -10.84 16 3 C 0.07 1.41 2.28 29.85 0.07 1.48 16 4 H 0.10 1.60 6.92 -2.39 -0.02 1.58 16 5 C -0.17 -2.01 9.17 71.98 0.66 -1.35 16 6 C 0.51 14.58 7.01 87.66 0.61 15.19 16 7 O -0.58 -22.35 15.98 15.53 0.25 -22.10 16 8 N -0.59 -15.63 2.96 -817.71 -2.42 -18.05 16 9 C 0.08 1.68 5.27 86.53 0.46 2.13 16 10 C -0.10 -1.55 4.81 30.67 0.15 -1.40 16 11 C -0.09 -1.85 0.55 -52.81 -0.03 -1.88 16 12 C -0.11 -1.47 6.20 31.53 0.20 -1.27 16 13 C 0.09 2.01 7.35 86.85 0.64 2.64 16 14 N -0.62 -20.82 2.94 -818.08 -2.40 -23.22 16 15 C 0.14 5.96 5.87 86.38 0.51 6.46 16 16 C 0.02 1.31 5.30 29.85 0.16 1.47 16 17 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 18 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 19 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 20 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 21 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 C 0.51 17.01 6.25 87.73 0.55 17.56 16 26 O -0.57 -24.08 13.73 -3.04 -0.04 -24.12 16 27 C -0.10 -2.42 4.78 30.52 0.15 -2.27 16 28 C 0.11 3.39 6.02 86.39 0.52 3.91 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 0.60 7.84 -2.39 -0.02 0.58 16 31 H 0.05 0.62 8.09 -2.39 -0.02 0.61 16 32 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.10 0.75 6.06 -2.39 -0.01 0.74 16 34 H 0.09 0.71 7.84 -2.39 -0.02 0.69 16 35 H 0.07 1.90 5.85 -2.39 -0.01 1.88 16 36 H 0.12 1.43 4.35 -2.39 -0.01 1.42 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 1.18 8.13 -2.39 -0.02 1.16 16 39 H 0.11 0.98 7.88 -2.38 -0.02 0.96 16 40 H 0.12 1.07 7.87 -2.39 -0.02 1.05 16 41 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 2.39 7.94 -2.39 -0.02 2.38 16 44 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 47 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 48 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.08 2.59 6.99 -2.39 -0.02 2.57 16 51 H 0.04 1.57 6.85 -2.39 -0.02 1.55 16 Total: -1.00 -87.28 396.00 3.87 -83.41 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.91 Total: 12.42 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.55 Total: 13.72 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -4.54 Total: -99.24 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -1.09 Total: -57.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -87.28 3.87 -83.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269773699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.879 kcal (2) G-P(sol) polarization free energy of solvation -87.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds