Wall clock time and date at job start Tue Mar 31 2020 21:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00300 * 2 1 4 4 H 1.08998 * 109.46856 * 30.00351 * 3 2 1 5 5 C 1.52992 * 109.46973 * 270.00019 * 3 2 1 6 6 C 1.50702 * 109.47102 * 150.00120 * 3 2 1 7 7 O 1.21282 * 120.00159 * 10.94719 * 6 3 2 8 8 N 1.34781 * 120.00222 * 190.95173 * 6 3 2 9 9 C 1.47148 * 120.63639 * 5.01703 * 8 6 3 10 10 C 1.53197 * 108.62828 * 232.14701 * 9 8 6 11 11 C 1.53045 * 109.49499 * 304.72432 * 10 9 8 12 12 C 1.53217 * 109.45452 * 61.94560 * 11 10 9 13 13 C 1.45957 * 120.64403 * 185.04266 * 8 6 3 14 14 C 1.53865 * 110.71082 * 251.99415 * 13 8 6 15 15 C 1.51456 * 103.97295 * 94.11640 * 14 13 8 16 16 O 1.21283 * 124.94001 * 195.88708 * 15 14 13 17 17 N 1.34507 * 110.11188 * 16.00735 * 15 14 13 18 18 C 1.46503 * 124.35013 * 180.21405 * 17 15 14 19 19 C 1.53000 * 109.46632 * 269.69805 * 18 17 15 20 20 C 1.50707 * 109.46924 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99544 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99811 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00206 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99735 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47128 * 90.00105 * 24 22 20 26 26 H 1.48496 * 109.47165 * 209.99874 * 24 22 20 27 27 H 1.48500 * 109.47204 * 329.99985 * 24 22 20 28 28 C 1.46952 * 111.29567 * 359.94362 * 17 15 14 29 29 H 1.09002 * 109.47666 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47285 * 299.99854 * 1 2 3 31 31 H 1.09006 * 109.47169 * 59.99722 * 1 2 3 32 32 H 1.08996 * 109.47368 * 305.42008 * 5 3 2 33 33 H 1.09005 * 109.47359 * 65.42791 * 5 3 2 34 34 H 1.09008 * 109.47193 * 185.42636 * 5 3 2 35 35 H 1.08997 * 109.60938 * 351.88860 * 9 8 6 36 36 H 1.09006 * 109.61096 * 112.23232 * 9 8 6 37 37 H 1.08998 * 109.47001 * 64.73106 * 10 9 8 38 38 H 1.09001 * 109.46865 * 184.72227 * 10 9 8 39 39 H 1.08994 * 109.47452 * 181.94195 * 11 10 9 40 40 H 1.08995 * 109.47172 * 301.95788 * 11 10 9 41 41 H 1.09000 * 109.48114 * 180.16951 * 12 11 10 42 42 H 1.08994 * 109.48567 * 60.11589 * 12 11 10 43 43 H 1.08996 * 110.51459 * 212.97095 * 14 13 8 44 44 H 1.09000 * 110.51464 * 335.55849 * 14 13 8 45 45 H 1.09002 * 109.46925 * 149.70040 * 18 17 15 46 46 H 1.09000 * 109.47258 * 29.69438 * 18 17 15 47 47 H 1.09000 * 109.47000 * 299.99791 * 19 18 17 48 48 H 1.08999 * 109.47601 * 60.00046 * 19 18 17 49 49 H 0.97001 * 119.99852 * 180.02562 * 23 22 20 50 50 H 1.09000 * 110.27253 * 102.92527 * 28 17 15 51 51 H 1.09001 * 110.27254 * 224.99378 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7713 -1.4424 6 6 3.3387 1.2638 0.7104 7 8 3.8408 0.1972 0.9954 8 7 3.9688 2.4118 1.0291 9 6 3.3238 3.7126 0.7898 10 6 4.2876 4.5975 -0.0070 11 6 5.6212 4.6992 0.7370 12 6 6.2485 3.3061 0.8528 13 6 5.3041 2.3888 1.6178 14 6 5.2501 2.7806 3.1048 15 6 5.1571 1.4539 3.8294 16 8 4.8229 1.3167 4.9871 17 7 5.5017 0.4503 3.0027 18 6 5.5165 -0.9648 3.3819 19 6 6.8985 -1.3324 3.9258 20 6 6.9141 -2.7882 4.3152 21 1 6.0268 -3.3907 4.1879 22 6 8.0606 -3.3505 4.8350 23 7 9.1408 -2.6166 4.9906 24 14 8.0796 -5.1548 5.3184 25 1 8.5028 -5.9746 4.1547 26 1 9.0327 -5.3570 6.4390 27 1 6.7185 -5.5672 5.7456 28 6 5.8550 0.9551 1.6687 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.8035 1.0283 -1.9835 33 1 1.2492 1.8940 -1.9275 34 1 2.7481 2.7236 -1.4440 35 1 2.4058 3.5665 0.2206 36 1 3.0914 4.1867 1.7435 37 1 4.4533 4.1596 -0.9913 38 1 3.8579 5.5928 -0.1199 39 1 6.2948 5.3565 0.1873 40 1 5.4509 5.1049 1.7342 41 1 7.1969 3.3776 1.3853 42 1 6.4206 2.9009 -0.1443 43 1 6.1558 3.3146 3.3922 44 1 4.3686 3.3886 3.3078 45 1 5.2953 -1.5774 2.5078 46 1 4.7644 -1.1430 4.1504 47 1 7.6506 -1.1542 3.1573 48 1 7.1198 -0.7198 4.7998 49 1 9.9475 -3.0124 5.3559 50 1 6.9376 0.9617 1.5419 51 1 5.3875 0.3432 0.8972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269773797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:54 Heat of formation + Delta-G solvation = -80.163792 kcal Electronic energy + Delta-G solvation = -32070.571056 eV Core-core repulsion = 27971.444113 eV Total energy + Delta-G solvation = -4099.126943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66273 -39.30338 -38.07166 -37.35003 -35.52636 -33.88029 -33.38962 -32.25145 -31.31740 -29.76236 -28.26818 -27.17057 -26.61661 -25.11014 -24.29947 -23.98004 -21.92864 -21.41603 -20.87437 -19.03835 -18.48647 -17.56681 -17.04715 -16.46729 -16.23350 -15.99304 -15.60575 -15.40584 -15.09979 -14.76627 -14.57277 -14.49126 -14.25914 -14.05838 -13.80130 -13.42611 -13.28036 -12.92653 -12.83198 -12.70462 -12.67049 -12.36861 -12.34863 -12.09269 -11.90826 -11.77387 -11.60966 -11.43573 -11.25785 -11.08418 -10.94309 -10.86780 -10.74769 -10.58518 -10.13384 -9.80778 -9.72512 -9.31291 -9.01120 -8.97818 -8.61769 -8.24735 -7.59538 -5.90427 -3.92445 2.38965 2.45180 3.25346 3.39965 3.45102 3.50193 3.54846 3.83114 4.09039 4.30740 4.41552 4.44459 4.50065 4.53931 4.56529 4.66800 4.72099 4.83576 4.97171 5.04006 5.06849 5.08943 5.11627 5.23508 5.29842 5.30663 5.43311 5.45638 5.46951 5.56604 5.60791 5.66635 5.72280 5.75912 5.79141 5.91182 5.99902 6.15275 6.40113 6.61772 6.76245 6.81218 7.04192 7.17396 7.26439 7.73324 7.84107 8.07985 8.11988 8.13060 8.49546 8.90349 9.14703 9.70565 11.21281 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.003572 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.700803 B = 7837.567662 C = 9211.837884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.069 3.931 4 H 0.082 0.918 5 C -0.173 4.173 6 C 0.511 3.489 7 O -0.479 6.479 8 N -0.598 5.598 9 C 0.100 3.900 10 C -0.134 4.134 11 C -0.120 4.120 12 C -0.115 4.115 13 C 0.164 3.836 14 C -0.162 4.162 15 C 0.507 3.493 16 O -0.545 6.545 17 N -0.584 5.584 18 C 0.138 3.862 19 C 0.012 3.988 20 C -0.516 4.516 21 H 0.057 0.943 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.894 3.106 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.273 1.273 28 C 0.070 3.930 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.016 0.984 48 H 0.018 0.982 49 H 0.259 0.741 50 H 0.063 0.937 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.963 19.850 -17.567 30.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.008 3.992 4 H 0.099 0.901 5 C -0.231 4.231 6 C 0.299 3.701 7 O -0.353 6.353 8 N -0.334 5.334 9 C -0.022 4.022 10 C -0.173 4.173 11 C -0.158 4.158 12 C -0.154 4.154 13 C 0.079 3.921 14 C -0.204 4.204 15 C 0.293 3.707 16 O -0.424 6.424 17 N -0.314 5.314 18 C 0.018 3.982 19 C -0.026 4.026 20 C -0.555 4.555 21 H 0.075 0.925 22 C -0.143 4.143 23 N -0.535 5.535 24 Si 0.722 3.278 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.198 1.198 28 C -0.053 4.053 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.596 18.874 -16.733 29.142 hybrid contribution -0.074 -0.546 0.315 0.634 sum -14.669 18.328 -16.418 28.647 Atomic orbital electron populations 1.22881 0.80625 1.03421 0.99797 1.88092 1.19606 1.24820 1.94869 1.21968 0.93697 0.86953 0.96591 0.90055 1.22315 1.03304 1.02430 0.95043 1.20422 0.86613 0.83865 0.79243 1.90586 1.62773 1.29926 1.51979 1.47664 1.16801 1.05792 1.63133 1.21940 0.96098 0.83566 1.00635 1.21920 0.96081 0.99819 0.99433 1.21553 0.96326 0.96747 1.01147 1.21728 0.97989 0.94478 1.01165 1.20779 0.82141 0.97272 0.91907 1.22720 1.04870 0.97946 0.94824 1.20607 0.77449 0.86544 0.86120 1.90686 1.49588 1.85799 1.16301 1.48255 1.64438 1.07821 1.10924 1.21671 1.00750 0.76467 0.99335 1.19419 0.90519 0.96363 0.96296 1.21128 0.97591 0.95014 1.41781 0.92509 1.24992 0.95619 0.97984 0.95738 1.69984 1.02017 1.35800 1.45672 0.86561 0.77892 0.85282 0.78076 1.20674 1.21272 1.19803 1.23204 0.99411 0.92899 0.89788 0.89009 0.93883 0.93967 0.90718 0.91331 0.90665 0.89516 0.90879 0.91155 0.90493 0.91154 0.91297 0.89710 0.90695 0.87407 0.88706 0.91331 0.91863 0.96585 0.96337 0.93102 0.91926 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.42 9.90 -54.90 -0.54 -4.97 16 3 C 0.07 0.68 2.28 -27.89 -0.06 0.61 16 4 H 0.08 0.60 6.79 -51.93 -0.35 0.25 16 5 C -0.17 -1.17 9.11 37.15 0.34 -0.83 16 6 C 0.51 6.63 6.87 -10.98 -0.08 6.55 16 7 O -0.48 -8.47 11.59 -14.11 -0.16 -8.64 16 8 N -0.60 -6.22 2.69 -158.10 -0.43 -6.64 16 9 C 0.10 0.62 5.25 -3.59 -0.02 0.60 16 10 C -0.13 -0.64 5.96 -26.61 -0.16 -0.79 16 11 C -0.12 -0.71 5.79 -26.60 -0.15 -0.87 16 12 C -0.12 -0.98 4.68 -27.00 -0.13 -1.11 16 13 C 0.16 1.97 0.87 -131.69 -0.11 1.85 16 14 C -0.16 -2.25 5.40 -27.06 -0.15 -2.40 16 15 C 0.51 10.52 8.03 -10.73 -0.09 10.44 16 16 O -0.55 -13.75 17.59 5.56 0.10 -13.65 16 17 N -0.58 -12.24 2.24 -172.66 -0.39 -12.63 16 18 C 0.14 3.40 5.71 -4.04 -0.02 3.37 16 19 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 20 C -0.52 -15.72 9.11 -34.44 -0.31 -16.04 16 21 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.90 -28.34 13.29 55.43 0.74 -27.60 16 24 Si 0.89 22.87 29.54 -169.99 -5.02 17.84 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.07 1.15 5.57 -3.44 -0.02 1.13 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.04 0.25 8.00 -51.93 -0.42 -0.17 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.35 8.00 -51.93 -0.42 -0.07 16 34 H 0.07 0.38 5.78 -51.92 -0.30 0.08 16 35 H 0.09 0.38 4.69 -51.93 -0.24 0.13 16 36 H 0.07 0.44 7.42 -51.93 -0.39 0.05 16 37 H 0.07 0.33 7.72 -51.93 -0.40 -0.07 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.42 7.64 -51.93 -0.40 0.02 16 41 H 0.08 0.73 7.95 -51.93 -0.41 0.31 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.11 1.33 7.74 -51.93 -0.40 0.93 16 44 H 0.09 1.17 7.14 -51.93 -0.37 0.80 16 45 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.06 1.66 7.93 -51.93 -0.41 1.24 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 50 H 0.06 1.02 7.86 -51.93 -0.41 0.61 16 51 H 0.14 2.52 4.57 -57.46 -0.26 2.25 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -39.39 392.87 -8.42 -47.81 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -8.52 Total: -3.15 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.11 Total: 5.70 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.08 Total: -46.87 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.61 Total: -27.26 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -39.39 -8.42 -47.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269773797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.355 kcal (2) G-P(sol) polarization free energy of solvation -39.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds