Wall clock time and date at job start Tue Mar 31 2020 21:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00300 * 2 1 4 4 H 1.08998 * 109.46856 * 30.00351 * 3 2 1 5 5 C 1.52992 * 109.46973 * 270.00019 * 3 2 1 6 6 C 1.50702 * 109.47102 * 150.00120 * 3 2 1 7 7 O 1.21282 * 120.00159 * 10.94719 * 6 3 2 8 8 N 1.34781 * 120.00222 * 190.95173 * 6 3 2 9 9 C 1.47148 * 120.63639 * 5.01703 * 8 6 3 10 10 C 1.53197 * 108.62828 * 232.14701 * 9 8 6 11 11 C 1.53045 * 109.49499 * 304.72432 * 10 9 8 12 12 C 1.53217 * 109.45452 * 61.94560 * 11 10 9 13 13 C 1.45957 * 120.64403 * 185.04266 * 8 6 3 14 14 C 1.53865 * 110.71082 * 251.99415 * 13 8 6 15 15 C 1.51456 * 103.97295 * 94.11640 * 14 13 8 16 16 O 1.21283 * 124.94001 * 195.88708 * 15 14 13 17 17 N 1.34507 * 110.11188 * 16.00735 * 15 14 13 18 18 C 1.46503 * 124.35013 * 180.21405 * 17 15 14 19 19 C 1.53000 * 109.46632 * 269.69805 * 18 17 15 20 20 C 1.50707 * 109.46924 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99544 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99811 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00206 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99735 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47128 * 90.00105 * 24 22 20 26 26 H 1.48496 * 109.47165 * 209.99874 * 24 22 20 27 27 H 1.48500 * 109.47204 * 329.99985 * 24 22 20 28 28 C 1.46952 * 111.29567 * 359.94362 * 17 15 14 29 29 H 1.09002 * 109.47666 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47285 * 299.99854 * 1 2 3 31 31 H 1.09006 * 109.47169 * 59.99722 * 1 2 3 32 32 H 1.08996 * 109.47368 * 305.42008 * 5 3 2 33 33 H 1.09005 * 109.47359 * 65.42791 * 5 3 2 34 34 H 1.09008 * 109.47193 * 185.42636 * 5 3 2 35 35 H 1.08997 * 109.60938 * 351.88860 * 9 8 6 36 36 H 1.09006 * 109.61096 * 112.23232 * 9 8 6 37 37 H 1.08998 * 109.47001 * 64.73106 * 10 9 8 38 38 H 1.09001 * 109.46865 * 184.72227 * 10 9 8 39 39 H 1.08994 * 109.47452 * 181.94195 * 11 10 9 40 40 H 1.08995 * 109.47172 * 301.95788 * 11 10 9 41 41 H 1.09000 * 109.48114 * 180.16951 * 12 11 10 42 42 H 1.08994 * 109.48567 * 60.11589 * 12 11 10 43 43 H 1.08996 * 110.51459 * 212.97095 * 14 13 8 44 44 H 1.09000 * 110.51464 * 335.55849 * 14 13 8 45 45 H 1.09002 * 109.46925 * 149.70040 * 18 17 15 46 46 H 1.09000 * 109.47258 * 29.69438 * 18 17 15 47 47 H 1.09000 * 109.47000 * 299.99791 * 19 18 17 48 48 H 1.08999 * 109.47601 * 60.00046 * 19 18 17 49 49 H 0.97001 * 119.99852 * 180.02562 * 23 22 20 50 50 H 1.09000 * 110.27253 * 102.92527 * 28 17 15 51 51 H 1.09001 * 110.27254 * 224.99378 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7713 -1.4424 6 6 3.3387 1.2638 0.7104 7 8 3.8408 0.1972 0.9954 8 7 3.9688 2.4118 1.0291 9 6 3.3238 3.7126 0.7898 10 6 4.2876 4.5975 -0.0070 11 6 5.6212 4.6992 0.7370 12 6 6.2485 3.3061 0.8528 13 6 5.3041 2.3888 1.6178 14 6 5.2501 2.7806 3.1048 15 6 5.1571 1.4539 3.8294 16 8 4.8229 1.3167 4.9871 17 7 5.5017 0.4503 3.0027 18 6 5.5165 -0.9648 3.3819 19 6 6.8985 -1.3324 3.9258 20 6 6.9141 -2.7882 4.3152 21 1 6.0268 -3.3907 4.1879 22 6 8.0606 -3.3505 4.8350 23 7 9.1408 -2.6166 4.9906 24 14 8.0796 -5.1548 5.3184 25 1 8.5028 -5.9746 4.1547 26 1 9.0327 -5.3570 6.4390 27 1 6.7185 -5.5672 5.7456 28 6 5.8550 0.9551 1.6687 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.8035 1.0283 -1.9835 33 1 1.2492 1.8940 -1.9275 34 1 2.7481 2.7236 -1.4440 35 1 2.4058 3.5665 0.2206 36 1 3.0914 4.1867 1.7435 37 1 4.4533 4.1596 -0.9913 38 1 3.8579 5.5928 -0.1199 39 1 6.2948 5.3565 0.1873 40 1 5.4509 5.1049 1.7342 41 1 7.1969 3.3776 1.3853 42 1 6.4206 2.9009 -0.1443 43 1 6.1558 3.3146 3.3922 44 1 4.3686 3.3886 3.3078 45 1 5.2953 -1.5774 2.5078 46 1 4.7644 -1.1430 4.1504 47 1 7.6506 -1.1542 3.1573 48 1 7.1198 -0.7198 4.7998 49 1 9.9475 -3.0124 5.3559 50 1 6.9376 0.9617 1.5419 51 1 5.3875 0.3432 0.8972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269773797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:53 Heat of formation + Delta-G solvation = -107.938274 kcal Electronic energy + Delta-G solvation = -32071.775447 eV Core-core repulsion = 27971.444113 eV Total energy + Delta-G solvation = -4100.331335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.72312 -40.55445 -39.10026 -38.23355 -37.14966 -35.70657 -34.41127 -33.78524 -32.11010 -31.31481 -29.64694 -28.01379 -27.59056 -26.75742 -25.28998 -24.92040 -23.31329 -22.73727 -21.88143 -20.44146 -19.55656 -18.69249 -18.42680 -17.90111 -17.36961 -17.30666 -16.89780 -16.57319 -16.33710 -16.03460 -15.89527 -15.50139 -15.26966 -14.91706 -14.79772 -14.62500 -14.45234 -14.34269 -14.10155 -13.90279 -13.79547 -13.56301 -13.37386 -13.23236 -13.04029 -12.88580 -12.87819 -12.69548 -12.54339 -12.28439 -12.07851 -12.01699 -11.90794 -11.82188 -11.49645 -11.47354 -11.40513 -10.86045 -10.84023 -10.63526 -10.07024 -9.73274 -9.22271 -8.27288 -6.40816 1.34737 1.38553 1.44950 1.49869 1.60251 1.66219 2.18462 2.40138 2.87208 3.05023 3.18669 3.30351 3.55273 3.69071 3.82892 3.96194 4.00901 4.07412 4.16337 4.21237 4.30002 4.40269 4.42550 4.50546 4.52886 4.55646 4.58347 4.66590 4.67440 4.73557 4.81305 4.83646 4.85103 4.88555 4.96762 5.02926 5.12014 5.21908 5.23817 5.28928 5.32523 5.40711 5.53823 5.55983 5.66244 5.77513 6.07329 6.12141 6.37236 6.37782 6.72268 7.16902 7.20912 7.28529 8.85306 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.003572 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.700803 B = 7837.567662 C = 9211.837884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.070 3.930 4 H 0.110 0.890 5 C -0.164 4.164 6 C 0.499 3.501 7 O -0.541 6.541 8 N -0.593 5.593 9 C 0.090 3.910 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.179 3.821 14 C -0.145 4.145 15 C 0.486 3.514 16 O -0.602 6.602 17 N -0.591 5.591 18 C 0.158 3.842 19 C 0.029 3.971 20 C -0.549 4.549 21 H 0.059 0.941 22 C 0.002 3.998 23 N -0.931 5.931 24 Si 0.975 3.025 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.266 1.266 28 C 0.061 3.939 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.069 0.931 46 H 0.039 0.961 47 H -0.002 1.002 48 H -0.024 1.024 49 H 0.266 0.734 50 H 0.058 0.942 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.213 22.266 -19.672 33.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C 0.010 3.990 4 H 0.128 0.872 5 C -0.222 4.222 6 C 0.288 3.712 7 O -0.419 6.419 8 N -0.327 5.327 9 C -0.031 4.031 10 C -0.166 4.166 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.093 3.907 14 C -0.185 4.185 15 C 0.275 3.725 16 O -0.485 6.485 17 N -0.320 5.320 18 C 0.035 3.965 19 C -0.009 4.009 20 C -0.588 4.588 21 H 0.078 0.922 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.798 3.202 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.061 4.061 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.148 0.852 44 H 0.137 0.863 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.017 0.983 48 H -0.005 1.005 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.861 21.372 -18.898 32.642 hybrid contribution 0.311 -1.280 0.975 1.639 sum -15.550 20.092 -17.924 31.093 Atomic orbital electron populations 1.23051 0.78784 1.03911 1.01422 1.88040 1.21821 1.26838 1.95196 1.22144 0.91981 0.86658 0.98266 0.87239 1.22290 1.04611 1.02624 0.92626 1.21245 0.87647 0.83566 0.78740 1.90551 1.64612 1.32204 1.54558 1.47817 1.16031 1.07059 1.61744 1.22376 0.97277 0.81426 1.02005 1.21927 0.94879 1.00894 0.98914 1.21582 0.97252 0.94634 1.02014 1.21749 0.97112 0.95462 1.00603 1.20687 0.83969 0.94529 0.91551 1.22735 1.07002 0.93843 0.94945 1.21890 0.75951 0.88985 0.85641 1.90632 1.51904 1.87115 1.18841 1.48328 1.64156 1.06393 1.13137 1.21091 0.97469 0.79605 0.98305 1.19177 0.92182 0.95548 0.93948 1.21497 0.98322 0.95856 1.43092 0.92247 1.26039 0.94795 1.03727 0.95010 1.70116 1.02779 1.38332 1.45811 0.85314 0.78344 0.78261 0.78309 1.18942 1.20187 1.19044 1.23425 0.99320 0.96093 0.87228 0.89317 0.93255 0.91177 0.92845 0.88951 0.88355 0.87104 0.89963 0.90712 0.87573 0.89385 0.90911 0.89814 0.90207 0.85249 0.86252 0.91246 0.94291 0.98333 1.00543 0.92490 0.92408 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.40 -9.86 9.90 -130.18 -1.29 -11.15 16 3 C 0.07 1.25 2.28 29.85 0.07 1.31 16 4 H 0.11 1.26 6.79 -2.39 -0.02 1.24 16 5 C -0.16 -1.74 9.11 71.98 0.66 -1.08 16 6 C 0.50 12.76 6.87 87.66 0.60 13.36 16 7 O -0.54 -20.18 11.59 15.77 0.18 -20.00 16 8 N -0.59 -11.20 2.69 -772.49 -2.08 -13.28 16 9 C 0.09 0.73 5.25 86.32 0.45 1.18 16 10 C -0.13 -0.55 5.96 30.68 0.18 -0.37 16 11 C -0.12 -0.88 5.79 30.68 0.18 -0.70 16 12 C -0.11 -1.62 4.68 30.42 0.14 -1.48 16 13 C 0.18 4.10 0.87 3.98 0.00 4.11 16 14 C -0.14 -3.89 5.40 30.38 0.16 -3.72 16 15 C 0.49 21.21 8.03 87.94 0.71 21.92 16 16 O -0.60 -32.30 17.59 -3.04 -0.05 -32.35 16 17 N -0.59 -26.52 2.24 -818.71 -1.83 -28.36 16 18 C 0.16 8.43 5.71 86.38 0.49 8.92 16 19 C 0.03 1.82 5.30 29.85 0.16 1.97 16 20 C -0.55 -35.08 9.11 25.60 0.23 -34.84 16 21 H 0.06 3.67 7.74 -2.91 -0.02 3.64 16 22 C 0.00 0.15 5.46 84.65 0.46 0.61 16 23 N -0.93 -60.64 13.29 21.44 0.28 -60.35 16 24 Si 0.97 47.71 29.54 68.60 2.03 49.74 16 25 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 28 C 0.06 2.10 5.57 86.52 0.48 2.58 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 0.66 8.09 -2.38 -0.02 0.64 16 31 H 0.07 0.64 8.00 -2.38 -0.02 0.62 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.56 8.00 -2.38 -0.02 0.54 16 34 H 0.10 0.56 5.78 -2.38 -0.01 0.54 16 35 H 0.11 0.40 4.69 -2.39 -0.01 0.38 16 36 H 0.08 0.59 7.42 -2.38 -0.02 0.58 16 37 H 0.07 0.32 7.72 -2.39 -0.02 0.30 16 38 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.07 0.54 7.64 -2.39 -0.02 0.52 16 41 H 0.08 1.26 7.95 -2.39 -0.02 1.25 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.13 2.97 7.74 -2.39 -0.02 2.95 16 44 H 0.12 2.65 7.14 -2.39 -0.02 2.64 16 45 H 0.07 3.64 8.14 -2.39 -0.02 3.62 16 46 H 0.04 2.22 7.93 -2.39 -0.02 2.21 16 47 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H -0.02 -1.65 8.14 -2.39 -0.02 -1.67 16 49 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 50 H 0.06 1.99 7.86 -2.39 -0.02 1.97 16 51 H 0.14 5.12 4.57 -90.05 -0.41 4.70 16 Total: -1.00 -94.69 392.87 3.97 -90.72 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.52 Total: 9.66 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.21 Total: 15.37 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -3.63 Total: -101.99 kcal Atomic # 8 Polarization: -62.34 SS G_CDS: -1.16 Total: -63.50 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -94.69 3.97 -90.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269773797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.218 kcal (2) G-P(sol) polarization free energy of solvation -94.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds