Wall clock time and date at job start Tue Mar 31 2020 21:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99778 * 2 1 4 4 H 1.09004 * 109.46828 * 29.99886 * 3 2 1 5 5 C 1.53000 * 109.46947 * 269.99941 * 3 2 1 6 6 C 1.50700 * 109.47031 * 149.99676 * 3 2 1 7 7 O 1.21283 * 119.99980 * 9.75593 * 6 3 2 8 8 N 1.34770 * 119.99809 * 189.74920 * 6 3 2 9 9 C 1.46854 * 120.38359 * 185.37046 * 8 6 3 10 10 C 1.53354 * 108.80917 * 236.92786 * 9 8 6 11 11 C 1.53181 * 108.77204 * 308.68337 * 10 9 8 12 12 C 1.52843 * 117.65837 * 269.96919 * 11 10 9 13 13 C 1.52818 * 117.71228 * 201.11302 * 11 10 9 14 14 H 1.09002 * 117.50201 * 215.12469 * 13 11 10 15 15 C 1.50701 * 117.50459 * 0.14226 * 13 11 10 16 16 O 1.21274 * 120.00266 * 85.20031 * 15 13 11 17 17 N 1.34777 * 119.99671 * 265.19871 * 15 13 11 18 18 C 1.46497 * 120.00054 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47414 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47411 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99433 * 359.97438 * 20 19 18 22 22 C 1.37868 * 119.99999 * 179.72212 * 20 19 18 23 23 N 1.31511 * 120.00478 * 0.27436 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.27420 * 22 20 19 25 25 H 1.48498 * 109.47166 * 59.99722 * 24 22 20 26 26 H 1.48502 * 109.47215 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47192 * 299.99990 * 24 22 20 28 28 C 1.53182 * 115.07584 * 55.44303 * 11 10 9 29 29 C 1.46842 * 120.38678 * 5.39263 * 8 6 3 30 30 H 1.08996 * 109.47126 * 60.00278 * 1 2 3 31 31 H 1.08999 * 109.46325 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46865 * 300.00038 * 1 2 3 33 33 H 1.09006 * 109.46968 * 175.00381 * 5 3 2 34 34 H 1.08993 * 109.47027 * 295.00152 * 5 3 2 35 35 H 1.09005 * 109.47277 * 55.00877 * 5 3 2 36 36 H 1.09001 * 109.58267 * 117.13282 * 9 8 6 37 37 H 1.08999 * 109.68823 * 356.79326 * 9 8 6 38 38 H 1.09004 * 109.58609 * 188.89334 * 10 9 8 39 39 H 1.09004 * 109.58507 * 68.47260 * 10 9 8 40 40 H 1.08999 * 117.50483 * 144.80886 * 12 11 10 41 41 H 1.09003 * 117.50317 * 359.76575 * 12 11 10 42 42 H 0.97004 * 120.00265 * 0.02562 * 17 15 13 43 43 H 1.08996 * 109.47000 * 59.99744 * 18 17 15 44 44 H 1.09002 * 109.47292 * 300.00375 * 18 17 15 45 45 H 1.08996 * 109.47549 * 59.99709 * 19 18 17 46 46 H 1.09002 * 109.46895 * 300.00248 * 19 18 17 47 47 H 0.96998 * 120.00383 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.58937 * 64.35182 * 28 11 10 49 49 H 1.08996 * 109.58766 * 184.77243 * 28 11 10 50 50 H 1.08999 * 109.58339 * 242.87381 * 29 8 6 51 51 H 1.08999 * 109.57875 * 3.13929 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2640 0.7105 7 8 3.8305 0.1980 1.0148 8 7 3.9800 2.4114 1.0076 9 6 5.3265 2.3797 1.5929 10 6 5.3058 3.1433 2.9226 11 6 4.6767 4.5205 2.6904 12 6 5.6081 5.6707 2.3085 13 6 4.9832 5.6219 3.7045 14 1 4.1904 6.3362 3.9267 15 6 5.8862 5.2729 4.8594 16 8 7.0901 5.3383 4.7291 17 7 5.3557 4.8880 6.0371 18 6 6.2335 4.5482 7.1597 19 6 5.3846 4.1469 8.3677 20 6 6.2875 3.7979 9.5226 21 1 7.3597 3.8561 9.4065 22 6 5.7448 3.4094 10.7290 23 7 4.4392 3.3381 10.8703 24 14 6.8639 2.9842 12.1630 25 1 7.6968 4.1643 12.5077 26 1 6.0398 2.5993 13.3369 27 1 7.7449 1.8503 11.7841 28 6 3.2795 4.4986 2.0628 29 6 3.3404 3.7080 0.7503 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.5777 2.8003 -1.4438 34 1 2.9512 1.1292 -1.9298 35 1 1.2718 1.7168 -1.9815 36 1 6.0326 2.8531 0.9107 37 1 5.6258 1.3466 1.7695 38 1 6.3247 3.2642 3.2905 39 1 4.7148 2.5899 3.6525 40 1 5.2267 6.4172 1.6120 41 1 6.6724 5.4502 2.2255 42 1 4.3927 4.8354 6.1413 43 1 6.8459 5.4125 7.4166 44 1 6.8791 3.7166 6.8774 45 1 4.7724 3.2825 8.1105 46 1 4.7387 4.9783 8.6501 47 1 4.0574 3.0643 11.7189 48 1 2.5793 4.0186 2.7464 49 1 2.9540 5.5189 1.8601 50 1 3.9235 4.2636 0.0159 51 1 2.3313 3.5485 0.3704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269775636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:48 Heat of formation + Delta-G solvation = -101.535555 kcal Electronic energy + Delta-G solvation = -29855.374974 eV Core-core repulsion = 25755.321282 eV Total energy + Delta-G solvation = -4100.053692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95010 -39.88113 -38.33033 -37.53930 -35.59130 -34.78560 -32.83164 -32.64519 -31.21156 -30.07480 -29.53868 -27.22254 -25.45341 -25.17348 -24.00801 -23.34554 -23.03268 -20.92329 -20.50010 -19.72581 -18.70881 -17.79438 -17.08735 -16.89963 -16.34640 -16.25073 -15.74144 -15.26095 -15.18925 -15.12808 -14.90084 -14.59615 -14.40578 -14.17003 -13.84512 -13.79334 -13.49586 -13.25720 -12.93635 -12.84334 -12.74515 -12.45685 -12.32331 -12.22793 -12.13371 -11.84861 -11.59363 -11.49661 -11.22524 -11.02678 -11.02057 -10.67381 -10.38817 -10.33995 -10.29173 -10.14609 -9.80189 -9.72835 -9.47108 -9.20794 -8.88116 -8.54914 -8.36121 -6.09745 -4.12792 2.31941 2.41825 2.79048 3.31173 3.34927 3.37481 3.46098 3.50163 3.70351 4.06399 4.24321 4.38610 4.41358 4.46861 4.50256 4.56295 4.66031 4.74738 4.86523 4.91315 4.96975 5.00026 5.05963 5.15563 5.21211 5.24204 5.27277 5.30238 5.32618 5.35145 5.52912 5.57474 5.61058 5.61980 5.78958 5.86231 5.99845 6.05801 6.23322 6.32969 6.33281 6.62447 6.72080 6.90717 7.07495 7.50421 7.60429 7.88088 7.91191 8.00996 8.27008 8.64249 8.92937 9.52138 11.01823 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.002318 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.972518 B =12074.589439 C =13447.375012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.085 0.915 5 C -0.172 4.172 6 C 0.515 3.485 7 O -0.517 6.517 8 N -0.608 5.608 9 C 0.119 3.881 10 C -0.103 4.103 11 C -0.101 4.101 12 C -0.138 4.138 13 C -0.178 4.178 14 H 0.124 0.876 15 C 0.535 3.465 16 O -0.551 6.551 17 N -0.717 5.717 18 C 0.122 3.878 19 C 0.014 3.986 20 C -0.523 4.523 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.894 5.894 24 Si 0.897 3.103 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.275 1.275 28 C -0.099 4.099 29 C 0.108 3.892 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.398 0.602 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.263 0.737 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 2.815 -27.432 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.103 0.897 5 C -0.230 4.230 6 C 0.302 3.698 7 O -0.391 6.391 8 N -0.344 5.344 9 C -0.003 4.003 10 C -0.141 4.141 11 C -0.102 4.102 12 C -0.175 4.175 13 C -0.199 4.199 14 H 0.142 0.858 15 C 0.321 3.679 16 O -0.429 6.429 17 N -0.365 5.365 18 C -0.001 4.001 19 C -0.024 4.024 20 C -0.561 4.561 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.137 4.137 29 C -0.015 4.015 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.231 0.769 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.094 0.906 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.957 2.031 -27.195 28.704 hybrid contribution -0.302 0.215 1.107 1.168 sum -9.259 2.246 -26.088 27.773 Atomic orbital electron populations 1.22905 0.80475 1.03435 1.00056 1.88067 1.19753 1.25033 1.94927 1.21950 0.93616 0.86910 0.96742 0.89685 1.22279 1.03657 1.02145 0.94879 1.20386 0.86437 0.83858 0.79131 1.90735 1.67072 1.29236 1.52016 1.47980 1.17837 1.05485 1.63106 1.21579 0.82260 1.02518 0.93950 1.21601 1.02060 0.93066 0.97397 1.21423 0.96452 0.91143 1.01197 1.23075 0.99905 0.99483 0.95030 1.22419 1.03031 1.03638 0.90839 0.85791 1.19532 0.88183 0.77029 0.83197 1.90668 1.15165 1.53822 1.83273 1.46282 1.10974 1.67046 1.12246 1.21730 0.93388 0.99338 0.85610 1.19309 0.95386 0.97020 0.90671 1.21008 0.93135 1.46000 0.95981 0.92315 1.24990 0.95100 0.95318 0.98835 1.69939 1.10214 1.47608 1.25557 0.86573 0.80479 0.79011 0.81484 1.20105 1.21224 1.20077 1.21591 0.94874 1.00877 0.96407 1.21839 0.98346 0.83929 0.97428 0.93817 0.89012 0.93688 0.90668 0.91034 0.91053 0.91023 0.88585 0.89657 0.90586 0.88124 0.87492 0.76885 0.92589 0.92597 0.95963 0.96004 0.92774 0.90529 0.89977 0.90581 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.88 9.90 -54.95 -0.54 -4.42 16 3 C 0.07 0.58 2.28 -27.88 -0.06 0.52 16 4 H 0.09 0.50 6.60 -51.93 -0.34 0.16 16 5 C -0.17 -0.99 9.22 37.16 0.34 -0.65 16 6 C 0.52 6.01 7.03 -10.99 -0.08 5.94 16 7 O -0.52 -8.54 15.92 -14.16 -0.23 -8.77 16 8 N -0.61 -5.65 2.92 -172.70 -0.50 -6.16 16 9 C 0.12 1.24 6.44 -3.67 -0.02 1.22 16 10 C -0.10 -1.19 5.23 -26.45 -0.14 -1.33 16 11 C -0.10 -0.95 1.94 -154.50 -0.30 -1.25 16 12 C -0.14 -1.30 9.45 -26.80 -0.25 -1.56 16 13 C -0.18 -2.01 5.92 -91.85 -0.54 -2.55 16 14 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.54 8.73 6.20 -10.98 -0.07 8.66 16 16 O -0.55 -11.03 16.25 5.56 0.09 -10.94 16 17 N -0.72 -12.33 5.56 -60.30 -0.33 -12.67 16 18 C 0.12 2.59 5.61 -4.04 -0.02 2.56 16 19 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 20 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 24 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C -0.10 -0.65 5.83 -26.46 -0.15 -0.80 16 29 C 0.11 0.61 5.27 -3.68 -0.02 0.59 16 30 H 0.04 0.20 7.78 -51.93 -0.40 -0.21 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.07 0.29 6.30 -51.93 -0.33 -0.04 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.31 7.78 -51.93 -0.40 -0.09 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.19 6.97 -51.93 -0.36 0.83 16 38 H 0.08 1.15 7.24 -51.93 -0.38 0.78 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.11 1.21 7.77 -51.93 -0.40 0.80 16 42 H 0.40 6.01 8.47 -40.82 -0.35 5.66 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.38 8.10 -51.93 -0.42 -0.05 16 50 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.09 0.31 4.86 -51.93 -0.25 0.06 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -35.94 409.31 -9.09 -45.03 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.67 Total: 1.25 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.78 Total: -0.49 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.10 Total: -44.35 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.68 Total: -24.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.94 -9.09 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269775636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.504 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds