Wall clock time and date at job start Tue Mar 31 2020 21:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99778 * 2 1 4 4 H 1.09004 * 109.46828 * 29.99886 * 3 2 1 5 5 C 1.53000 * 109.46947 * 269.99941 * 3 2 1 6 6 C 1.50700 * 109.47031 * 149.99676 * 3 2 1 7 7 O 1.21283 * 119.99980 * 9.75593 * 6 3 2 8 8 N 1.34770 * 119.99809 * 189.74920 * 6 3 2 9 9 C 1.46854 * 120.38359 * 185.37046 * 8 6 3 10 10 C 1.53354 * 108.80917 * 236.92786 * 9 8 6 11 11 C 1.53181 * 108.77204 * 308.68337 * 10 9 8 12 12 C 1.52843 * 117.65837 * 269.96919 * 11 10 9 13 13 C 1.52818 * 117.71228 * 201.11302 * 11 10 9 14 14 H 1.09002 * 117.50201 * 215.12469 * 13 11 10 15 15 C 1.50701 * 117.50459 * 0.14226 * 13 11 10 16 16 O 1.21274 * 120.00266 * 85.20031 * 15 13 11 17 17 N 1.34777 * 119.99671 * 265.19871 * 15 13 11 18 18 C 1.46497 * 120.00054 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47414 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47411 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99433 * 359.97438 * 20 19 18 22 22 C 1.37868 * 119.99999 * 179.72212 * 20 19 18 23 23 N 1.31511 * 120.00478 * 0.27436 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.27420 * 22 20 19 25 25 H 1.48498 * 109.47166 * 59.99722 * 24 22 20 26 26 H 1.48502 * 109.47215 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47192 * 299.99990 * 24 22 20 28 28 C 1.53182 * 115.07584 * 55.44303 * 11 10 9 29 29 C 1.46842 * 120.38678 * 5.39263 * 8 6 3 30 30 H 1.08996 * 109.47126 * 60.00278 * 1 2 3 31 31 H 1.08999 * 109.46325 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46865 * 300.00038 * 1 2 3 33 33 H 1.09006 * 109.46968 * 175.00381 * 5 3 2 34 34 H 1.08993 * 109.47027 * 295.00152 * 5 3 2 35 35 H 1.09005 * 109.47277 * 55.00877 * 5 3 2 36 36 H 1.09001 * 109.58267 * 117.13282 * 9 8 6 37 37 H 1.08999 * 109.68823 * 356.79326 * 9 8 6 38 38 H 1.09004 * 109.58609 * 188.89334 * 10 9 8 39 39 H 1.09004 * 109.58507 * 68.47260 * 10 9 8 40 40 H 1.08999 * 117.50483 * 144.80886 * 12 11 10 41 41 H 1.09003 * 117.50317 * 359.76575 * 12 11 10 42 42 H 0.97004 * 120.00265 * 0.02562 * 17 15 13 43 43 H 1.08996 * 109.47000 * 59.99744 * 18 17 15 44 44 H 1.09002 * 109.47292 * 300.00375 * 18 17 15 45 45 H 1.08996 * 109.47549 * 59.99709 * 19 18 17 46 46 H 1.09002 * 109.46895 * 300.00248 * 19 18 17 47 47 H 0.96998 * 120.00383 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.58937 * 64.35182 * 28 11 10 49 49 H 1.08996 * 109.58766 * 184.77243 * 28 11 10 50 50 H 1.08999 * 109.58339 * 242.87381 * 29 8 6 51 51 H 1.08999 * 109.57875 * 3.13929 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2640 0.7105 7 8 3.8305 0.1980 1.0148 8 7 3.9800 2.4114 1.0076 9 6 5.3265 2.3797 1.5929 10 6 5.3058 3.1433 2.9226 11 6 4.6767 4.5205 2.6904 12 6 5.6081 5.6707 2.3085 13 6 4.9832 5.6219 3.7045 14 1 4.1904 6.3362 3.9267 15 6 5.8862 5.2729 4.8594 16 8 7.0901 5.3383 4.7291 17 7 5.3557 4.8880 6.0371 18 6 6.2335 4.5482 7.1597 19 6 5.3846 4.1469 8.3677 20 6 6.2875 3.7979 9.5226 21 1 7.3597 3.8561 9.4065 22 6 5.7448 3.4094 10.7290 23 7 4.4392 3.3381 10.8703 24 14 6.8639 2.9842 12.1630 25 1 7.6968 4.1643 12.5077 26 1 6.0398 2.5993 13.3369 27 1 7.7449 1.8503 11.7841 28 6 3.2795 4.4986 2.0628 29 6 3.3404 3.7080 0.7503 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.5777 2.8003 -1.4438 34 1 2.9512 1.1292 -1.9298 35 1 1.2718 1.7168 -1.9815 36 1 6.0326 2.8531 0.9107 37 1 5.6258 1.3466 1.7695 38 1 6.3247 3.2642 3.2905 39 1 4.7148 2.5899 3.6525 40 1 5.2267 6.4172 1.6120 41 1 6.6724 5.4502 2.2255 42 1 4.3927 4.8354 6.1413 43 1 6.8459 5.4125 7.4166 44 1 6.8791 3.7166 6.8774 45 1 4.7724 3.2825 8.1105 46 1 4.7387 4.9783 8.6501 47 1 4.0574 3.0643 11.7189 48 1 2.5793 4.0186 2.7464 49 1 2.9540 5.5189 1.8601 50 1 3.9235 4.2636 0.0159 51 1 2.3313 3.5485 0.3704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269775636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:47 Heat of formation + Delta-G solvation = -126.407185 kcal Electronic energy + Delta-G solvation = -29856.453489 eV Core-core repulsion = 25755.321282 eV Total energy + Delta-G solvation = -4101.132207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79683 -40.95251 -39.26079 -38.40361 -36.73443 -36.26803 -34.82892 -33.33617 -31.89066 -31.60250 -30.62385 -27.70829 -27.22148 -25.90154 -24.85172 -24.51887 -23.77162 -22.74490 -21.34845 -20.89841 -19.49788 -18.68062 -18.48795 -17.93341 -17.71128 -17.03578 -16.71690 -16.56650 -16.48972 -16.25037 -15.86494 -15.69225 -15.60562 -15.13156 -14.85964 -14.57767 -14.46303 -14.31549 -14.19877 -13.97894 -13.64440 -13.34714 -13.27551 -13.04034 -12.98921 -12.94949 -12.75199 -12.68365 -12.56382 -12.27735 -12.21097 -12.10381 -11.82002 -11.68033 -11.51674 -11.17198 -11.05271 -10.91996 -10.71721 -10.63529 -10.49992 -10.04006 -9.67057 -8.27449 -6.38390 1.38769 1.41285 1.48001 1.49270 1.55676 1.72929 2.22038 2.42255 2.75426 2.91040 3.07064 3.40767 3.54231 3.66551 3.73227 3.85250 3.88181 4.01989 4.03371 4.08586 4.26082 4.42051 4.42627 4.45649 4.48416 4.51320 4.55701 4.58075 4.64463 4.71167 4.74763 4.79819 4.83172 4.87253 4.90262 4.94823 4.97349 5.10129 5.20172 5.22514 5.26636 5.32893 5.46399 5.48348 5.53230 5.74820 6.06402 6.12423 6.37402 6.62915 6.74480 7.09723 7.28617 7.31068 8.84237 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.002318 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.972518 B =12074.589439 C =13447.375012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.402 6.402 3 C 0.070 3.930 4 H 0.117 0.883 5 C -0.165 4.165 6 C 0.504 3.496 7 O -0.583 6.583 8 N -0.602 5.602 9 C 0.123 3.877 10 C -0.100 4.100 11 C -0.090 4.090 12 C -0.122 4.122 13 C -0.189 4.189 14 H 0.157 0.843 15 C 0.532 3.468 16 O -0.593 6.593 17 N -0.715 5.715 18 C 0.141 3.859 19 C 0.025 3.975 20 C -0.550 4.550 21 H 0.058 0.942 22 C 0.008 3.992 23 N -0.926 5.926 24 Si 0.965 3.035 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.270 1.270 28 C -0.094 4.094 29 C 0.100 3.900 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.143 0.857 41 H 0.083 0.917 42 H 0.409 0.591 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.005 0.995 46 H 0.010 0.990 47 H 0.267 0.733 48 H 0.070 0.930 49 H 0.120 0.880 50 H 0.103 0.897 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.946 5.201 -29.505 32.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.321 6.321 3 C 0.009 3.991 4 H 0.135 0.865 5 C -0.223 4.223 6 C 0.293 3.707 7 O -0.462 6.462 8 N -0.336 5.336 9 C 0.000 4.000 10 C -0.138 4.138 11 C -0.091 4.091 12 C -0.159 4.159 13 C -0.210 4.210 14 H 0.174 0.826 15 C 0.320 3.680 16 O -0.474 6.474 17 N -0.365 5.365 18 C 0.017 3.983 19 C -0.012 4.012 20 C -0.588 4.588 21 H 0.076 0.924 22 C -0.191 4.191 23 N -0.565 5.565 24 Si 0.789 3.211 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.195 1.195 28 C -0.132 4.132 29 C -0.021 4.021 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.161 0.839 41 H 0.102 0.898 42 H 0.245 0.755 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.139 0.861 50 H 0.121 0.879 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.873 4.472 -29.296 31.567 hybrid contribution 0.305 -0.540 1.754 1.860 sum -10.567 3.932 -27.542 29.761 Atomic orbital electron populations 1.23094 0.78558 1.04097 1.01631 1.88020 1.22015 1.26835 1.95226 1.22137 0.91859 0.86848 0.98219 0.86531 1.22285 1.04265 1.02960 0.92776 1.21239 0.87535 0.83391 0.78538 1.90699 1.68901 1.31721 1.54863 1.48093 1.17063 1.06696 1.61720 1.21402 0.83885 1.00714 0.93952 1.21466 1.00142 0.94965 0.97275 1.21484 0.98421 0.89092 1.00128 1.23201 0.98805 0.99882 0.93986 1.22443 1.03471 1.05715 0.89380 0.82570 1.20464 0.88416 0.75387 0.83728 1.90644 1.17432 1.55388 1.83928 1.46135 1.11095 1.67413 1.11860 1.21183 0.92990 0.98217 0.85879 1.19101 0.94959 0.95687 0.91477 1.21437 0.93600 1.46427 0.97351 0.92424 1.25874 0.96632 0.94984 1.01639 1.70044 1.11852 1.48181 1.26455 0.85506 0.78593 0.79022 0.77993 1.19148 1.20397 1.19519 1.21675 0.92086 1.03212 0.96187 1.22262 1.00235 0.81842 0.97778 0.91285 0.89050 0.92903 0.88001 0.93221 0.89019 0.89117 0.91693 0.92600 0.93127 0.83864 0.89839 0.75532 0.93579 0.94161 0.97688 0.97189 0.92464 0.91144 0.86148 0.87891 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.40 -8.42 9.90 -130.13 -1.29 -9.71 16 3 C 0.07 1.04 2.28 29.85 0.07 1.10 16 4 H 0.12 0.92 6.60 -2.38 -0.02 0.90 16 5 C -0.17 -1.38 9.22 71.98 0.66 -0.72 16 6 C 0.50 11.69 7.03 87.66 0.62 12.30 16 7 O -0.58 -20.62 15.92 15.82 0.25 -20.37 16 8 N -0.60 -10.35 2.92 -818.70 -2.39 -12.74 16 9 C 0.12 2.65 6.44 86.43 0.56 3.21 16 10 C -0.10 -2.39 5.23 30.77 0.16 -2.23 16 11 C -0.09 -1.49 1.94 -52.17 -0.10 -1.59 16 12 C -0.12 -1.91 9.45 30.55 0.29 -1.62 16 13 C -0.19 -3.84 5.92 -11.59 -0.07 -3.91 16 14 H 0.16 2.22 8.14 -2.39 -0.02 2.20 16 15 C 0.53 17.49 6.20 87.66 0.54 18.03 16 16 O -0.59 -24.49 16.25 -3.01 -0.05 -24.53 16 17 N -0.72 -25.25 5.56 -463.07 -2.57 -27.82 16 18 C 0.14 6.28 5.61 86.38 0.48 6.76 16 19 C 0.03 1.30 5.09 29.85 0.15 1.45 16 20 C -0.55 -31.44 9.11 25.60 0.23 -31.20 16 21 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 22 C 0.01 0.44 5.46 84.65 0.46 0.90 16 23 N -0.93 -55.08 13.29 21.44 0.28 -54.80 16 24 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 28 C -0.09 -0.79 5.83 30.77 0.18 -0.61 16 29 C 0.10 0.67 5.27 86.43 0.46 1.13 16 30 H 0.07 0.41 7.78 -2.39 -0.02 0.39 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 33 H 0.10 0.28 6.30 -2.38 -0.02 0.26 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.42 7.78 -2.38 -0.02 0.40 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.80 6.97 -2.39 -0.02 1.79 16 38 H 0.06 1.64 7.24 -2.39 -0.02 1.63 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.78 7.77 -2.39 -0.02 1.76 16 42 H 0.41 12.50 8.47 -92.71 -0.79 11.71 16 43 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 47 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.12 0.23 8.10 -2.39 -0.02 0.21 16 50 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 51 H 0.12 0.15 4.86 -2.39 -0.01 0.14 16 Total: -1.00 -85.07 409.31 2.32 -82.75 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.14 Total: 16.33 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.92 Total: 4.48 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -4.68 Total: -95.36 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -1.09 Total: -54.61 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -85.07 2.32 -82.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269775636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.660 kcal (2) G-P(sol) polarization free energy of solvation -85.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds