Wall clock time and date at job start Tue Mar 31 2020 21:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00199 * 2 1 4 4 H 1.09005 * 109.47270 * 29.99525 * 3 2 1 5 5 C 1.53002 * 109.46947 * 269.99966 * 3 2 1 6 6 C 1.50699 * 109.47540 * 149.99470 * 3 2 1 7 7 O 1.21282 * 119.99979 * 9.80708 * 6 3 2 8 8 N 1.34770 * 120.00145 * 189.80912 * 6 3 2 9 9 C 1.46846 * 120.38316 * 5.03087 * 8 6 3 10 10 C 1.53798 * 108.57241 * 123.09526 * 9 8 6 11 11 C 1.53181 * 108.71345 * 51.51524 * 10 9 8 12 12 C 1.52846 * 117.65793 * 89.90523 * 11 10 9 13 13 C 1.52819 * 117.71130 * 158.76345 * 11 10 9 14 14 H 1.08993 * 117.50199 * 144.90264 * 13 11 10 15 15 C 1.50703 * 117.50341 * 359.88512 * 13 11 10 16 16 O 1.21279 * 119.99819 * 264.96785 * 15 13 11 17 17 N 1.34774 * 120.00050 * 84.96809 * 15 13 11 18 18 C 1.46494 * 120.00278 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47259 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47030 * 179.97438 * 19 18 17 21 21 H 1.07992 * 120.00076 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99926 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00127 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47160 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47333 * 119.99551 * 24 22 20 27 27 H 1.48501 * 109.47311 * 239.99716 * 24 22 20 28 28 C 1.53184 * 115.07803 * 304.42688 * 11 10 9 29 29 C 1.46842 * 120.38013 * 185.31015 * 8 6 3 30 30 H 1.09003 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47604 * 300.00233 * 1 2 3 32 32 H 1.09003 * 109.47058 * 60.00414 * 1 2 3 33 33 H 1.08997 * 109.46953 * 54.99944 * 5 3 2 34 34 H 1.09003 * 109.46958 * 175.00062 * 5 3 2 35 35 H 1.09001 * 109.46561 * 294.99845 * 5 3 2 36 36 H 1.09004 * 109.58052 * 242.92919 * 9 8 6 37 37 H 1.09004 * 109.57417 * 3.32822 * 9 8 6 38 38 H 1.08998 * 109.71479 * 291.68401 * 10 9 8 39 39 H 1.09003 * 109.62949 * 171.29182 * 10 9 8 40 40 H 1.08992 * 117.50446 * 215.18421 * 12 11 10 41 41 H 1.09001 * 117.49971 * 0.23562 * 12 11 10 42 42 H 0.96998 * 119.99685 * 359.97438 * 17 15 13 43 43 H 1.08998 * 109.46811 * 299.99817 * 18 17 15 44 44 H 1.09001 * 109.47415 * 59.99673 * 18 17 15 45 45 H 1.08998 * 109.47258 * 299.99786 * 19 18 17 46 46 H 1.08994 * 109.47244 * 60.00271 * 19 18 17 47 47 H 0.97003 * 119.99721 * 180.02562 * 23 22 20 48 48 H 1.08993 * 109.59009 * 295.66331 * 28 11 10 49 49 H 1.09001 * 109.70553 * 175.30260 * 28 11 10 50 50 H 1.09001 * 109.58229 * 356.67810 * 29 8 6 51 51 H 1.09001 * 109.57922 * 117.07451 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3386 1.2639 0.7105 7 8 3.8309 0.1979 1.0140 8 7 3.9794 2.4114 1.0087 9 6 3.3424 3.7080 0.7451 10 6 3.2783 4.4990 2.0625 11 6 4.6750 4.5210 2.6910 12 6 5.6069 5.6708 2.3092 13 6 4.9808 5.6228 3.7048 14 1 5.6333 5.3707 4.5407 15 6 3.8847 6.6108 4.0108 16 8 3.8397 7.6688 3.4197 17 7 2.9545 6.3185 4.9412 18 6 1.8886 7.2786 5.2383 19 6 0.9736 6.7055 6.3223 20 6 -0.1225 7.6935 6.6282 21 1 -0.1622 8.6360 6.1025 22 6 -1.0741 7.3945 7.5802 23 7 -1.0254 6.2470 8.2208 24 14 -2.4331 8.6188 7.9590 25 1 -2.2653 9.8238 7.1075 26 1 -3.7522 7.9958 7.6813 27 1 -2.3621 9.0104 9.3897 28 6 5.3037 3.1438 2.9245 29 6 5.3253 2.3796 1.5951 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.2719 1.7166 -1.9815 34 1 2.5778 2.8001 -1.4438 35 1 2.9513 1.1289 -1.9297 36 1 3.9295 4.2611 0.0120 37 1 2.3340 3.5485 0.3633 38 1 2.5776 4.0192 2.7458 39 1 2.9520 5.5194 1.8614 40 1 6.6711 5.4502 2.2271 41 1 5.2259 6.4171 1.6121 42 1 2.9904 5.4721 5.4137 43 1 2.3281 8.2122 5.5895 44 1 1.3078 7.4675 4.3355 45 1 0.5341 5.7721 5.9706 46 1 1.5541 6.5164 7.2251 47 1 -1.6951 6.0365 8.8903 48 1 4.7122 2.5910 3.6542 49 1 6.3222 3.2625 3.2943 50 1 5.6220 1.3459 1.7727 51 1 6.0321 2.8525 0.9134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269775637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:49 Heat of formation + Delta-G solvation = -125.009795 kcal Electronic energy + Delta-G solvation = -30081.406563 eV Core-core repulsion = 25980.334951 eV Total energy + Delta-G solvation = -4101.071612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79351 -40.94405 -39.26446 -38.40852 -36.69881 -36.29043 -34.79935 -33.31539 -31.84007 -31.63351 -30.61702 -27.74913 -27.19808 -25.89589 -24.81426 -24.58058 -23.79278 -22.71450 -21.32813 -20.89949 -19.50594 -18.67275 -18.48097 -17.99531 -17.59621 -17.06636 -16.68343 -16.61549 -16.46142 -16.25622 -15.88746 -15.77522 -15.47595 -15.14652 -14.91688 -14.57719 -14.34217 -14.30798 -14.25001 -14.01031 -13.60920 -13.38015 -13.23484 -13.08829 -12.97440 -12.95719 -12.78214 -12.68430 -12.52160 -12.27222 -12.23795 -12.13484 -11.80796 -11.69237 -11.46647 -11.17823 -11.00233 -10.98336 -10.69036 -10.62440 -10.52507 -10.01040 -9.67147 -8.25492 -6.36111 1.39929 1.41307 1.46323 1.54066 1.58435 1.73306 2.22628 2.43575 2.71462 2.85481 3.09430 3.37534 3.54563 3.64347 3.72395 3.85395 3.86301 3.98181 4.02572 4.10203 4.27505 4.39301 4.42799 4.47150 4.50002 4.50949 4.52470 4.56156 4.63736 4.67655 4.75942 4.79429 4.83386 4.83862 4.90489 4.93097 4.98808 5.08149 5.16328 5.20961 5.27724 5.30300 5.48960 5.49238 5.56338 5.77618 6.01663 6.14757 6.30651 6.64056 6.77705 7.07107 7.29300 7.33624 8.86380 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.002718 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.968432 B =10297.634162 C =12243.185522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.064 3.936 4 H 0.103 0.897 5 C -0.165 4.165 6 C 0.511 3.489 7 O -0.573 6.573 8 N -0.602 5.602 9 C 0.111 3.889 10 C -0.106 4.106 11 C -0.092 4.092 12 C -0.121 4.121 13 C -0.190 4.190 14 H 0.148 0.852 15 C 0.537 3.463 16 O -0.589 6.589 17 N -0.714 5.714 18 C 0.142 3.858 19 C 0.024 3.976 20 C -0.545 4.545 21 H 0.059 0.941 22 C 0.007 3.993 23 N -0.927 5.927 24 Si 0.964 3.036 25 H -0.265 1.265 26 H -0.276 1.276 27 H -0.278 1.278 28 C -0.089 4.089 29 C 0.114 3.886 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.408 0.592 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.008 0.992 46 H 0.005 0.995 47 H 0.265 0.735 48 H 0.061 0.939 49 H 0.105 0.895 50 H 0.079 0.921 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.169 -8.945 -19.245 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.003 3.997 4 H 0.121 0.879 5 C -0.223 4.223 6 C 0.299 3.701 7 O -0.451 6.451 8 N -0.336 5.336 9 C -0.011 4.011 10 C -0.144 4.144 11 C -0.092 4.092 12 C -0.159 4.159 13 C -0.211 4.211 14 H 0.165 0.835 15 C 0.325 3.675 16 O -0.470 6.470 17 N -0.364 5.364 18 C 0.018 3.982 19 C -0.014 4.014 20 C -0.584 4.584 21 H 0.077 0.923 22 C -0.192 4.192 23 N -0.566 5.566 24 Si 0.789 3.211 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.204 1.204 28 C -0.127 4.127 29 C -0.008 4.008 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.112 0.888 42 H 0.243 0.757 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.024 0.976 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.123 0.877 50 H 0.098 0.902 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.398 -9.021 -19.365 24.214 hybrid contribution -1.189 0.387 1.168 1.711 sum 10.209 -8.634 -18.197 22.581 Atomic orbital electron populations 1.23083 0.78783 1.04222 1.01318 1.87990 1.21727 1.26449 1.95217 1.22137 0.92566 0.86761 0.98261 0.87936 1.22264 1.04275 1.02762 0.92970 1.20911 0.87095 0.83532 0.78515 1.90676 1.68625 1.31100 1.54737 1.48065 1.17976 1.05660 1.61873 1.22082 0.99852 0.82437 0.96712 1.21651 0.94826 1.00628 0.97290 1.21465 0.96720 0.90986 1.00054 1.23180 1.00100 0.98658 0.93919 1.22400 1.00484 1.00538 0.97674 0.83464 1.20280 0.82074 0.86871 0.78237 1.90650 1.76336 1.27370 1.52650 1.46156 1.27967 1.21772 1.40481 1.21192 0.87569 0.91415 0.97987 1.19116 0.93490 0.95952 0.92809 1.21490 1.11479 1.03668 1.21719 0.92296 1.25871 1.00431 0.97280 0.95586 1.70070 1.36527 1.23961 1.26060 0.85407 0.78563 0.79038 0.78111 1.18859 1.20173 1.20362 1.21536 1.02206 0.91899 0.97059 1.21679 0.82733 1.01699 0.94685 0.88458 0.93439 0.91695 0.89461 0.88701 0.92351 0.88198 0.87972 0.91959 0.91330 0.85006 0.88846 0.75700 0.93817 0.93416 0.97407 0.97640 0.92577 0.92045 0.87669 0.90224 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.40 -9.06 9.90 -130.13 -1.29 -10.35 16 3 C 0.06 1.15 2.28 29.85 0.07 1.22 16 4 H 0.10 1.46 6.61 -2.38 -0.02 1.45 16 5 C -0.17 -1.98 9.21 71.98 0.66 -1.32 16 6 C 0.51 11.86 7.03 87.66 0.62 12.48 16 7 O -0.57 -18.67 15.92 15.81 0.25 -18.42 16 8 N -0.60 -10.34 2.91 -817.83 -2.38 -12.72 16 9 C 0.11 1.45 5.30 86.58 0.46 1.91 16 10 C -0.11 -1.92 5.25 30.92 0.16 -1.76 16 11 C -0.09 -1.50 1.94 -52.17 -0.10 -1.60 16 12 C -0.12 -1.91 9.46 30.55 0.29 -1.63 16 13 C -0.19 -3.89 5.90 -11.59 -0.07 -3.96 16 14 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.54 16.69 6.10 87.66 0.53 17.22 16 16 O -0.59 -22.92 16.59 -3.03 -0.05 -22.97 16 17 N -0.71 -23.79 5.56 -463.08 -2.57 -26.36 16 18 C 0.14 5.95 5.61 86.38 0.48 6.43 16 19 C 0.02 1.18 5.09 29.85 0.15 1.33 16 20 C -0.55 -30.04 9.11 25.60 0.23 -29.81 16 21 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 22 C 0.01 0.39 5.46 84.65 0.46 0.85 16 23 N -0.93 -53.91 13.29 21.45 0.28 -53.63 16 24 Si 0.96 43.07 29.54 68.60 2.03 45.09 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 28 C -0.09 -1.25 5.83 30.77 0.18 -1.07 16 29 C 0.11 1.72 6.44 86.43 0.56 2.28 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.06 0.67 7.78 -2.39 -0.02 0.65 16 33 H 0.09 0.79 7.78 -2.39 -0.02 0.77 16 34 H 0.09 0.74 6.29 -2.39 -0.01 0.72 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.04 4.85 -2.38 -0.01 1.03 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.49 7.35 -2.39 -0.02 1.48 16 40 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.77 7.92 -2.39 -0.02 1.75 16 42 H 0.41 12.06 8.47 -92.71 -0.79 11.27 16 43 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 48 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.10 1.00 8.11 -2.39 -0.02 0.98 16 50 H 0.08 1.52 6.96 -2.39 -0.02 1.50 16 51 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.16 409.79 2.32 -74.84 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.14 Total: 20.41 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 5.92 Total: 4.12 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -4.67 Total: -92.72 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.09 Total: -51.75 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -77.16 2.32 -74.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269775637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.172 kcal (2) G-P(sol) polarization free energy of solvation -77.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds