Wall clock time and date at job start Tue Mar 31 2020 21:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47111 * 2 1 4 4 O 1.42900 * 109.47138 * 239.98992 * 2 1 3 5 5 C 1.53005 * 109.46829 * 119.99373 * 2 1 3 6 6 C 1.50702 * 109.47066 * 185.00111 * 5 2 1 7 7 O 1.21275 * 119.99635 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99756 * 180.02562 * 6 5 2 9 9 C 1.47138 * 120.64632 * 4.10450 * 8 6 5 10 10 C 1.53203 * 108.63600 * 232.15027 * 9 8 6 11 11 C 1.53041 * 109.49067 * 304.72591 * 10 9 8 12 12 C 1.53213 * 109.45945 * 61.93908 * 11 10 9 13 13 C 1.45965 * 120.63862 * 184.13369 * 8 6 5 14 14 C 1.53863 * 110.70621 * 251.98823 * 13 8 6 15 15 C 1.51451 * 104.03621 * 94.33326 * 14 13 8 16 16 O 1.21278 * 124.94154 * 195.87865 * 15 14 13 17 17 N 1.34519 * 110.10733 * 15.61331 * 15 14 13 18 18 C 1.46500 * 124.34997 * 180.33936 * 17 15 14 19 19 C 1.53007 * 109.46991 * 90.02168 * 18 17 15 20 20 C 1.50695 * 109.46771 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00452 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99778 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00074 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47079 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46957 * 119.99740 * 24 22 20 27 27 H 1.48497 * 109.47107 * 239.99458 * 24 22 20 28 28 C 1.46952 * 111.29643 * 0.36137 * 17 15 14 29 29 H 1.09000 * 109.47031 * 300.00765 * 1 2 3 30 30 H 1.09004 * 109.46801 * 60.00463 * 1 2 3 31 31 H 1.09001 * 109.47100 * 180.02562 * 1 2 3 32 32 H 0.96697 * 114.00474 * 300.00302 * 4 2 1 33 33 H 1.09000 * 109.46954 * 65.00229 * 5 2 1 34 34 H 1.09002 * 109.47207 * 304.99763 * 5 2 1 35 35 H 1.09001 * 109.61179 * 351.89153 * 9 8 6 36 36 H 1.09002 * 109.60876 * 112.40284 * 9 8 6 37 37 H 1.09002 * 109.46618 * 64.72743 * 10 9 8 38 38 H 1.08998 * 109.47182 * 184.71709 * 10 9 8 39 39 H 1.08996 * 109.47752 * 181.93769 * 11 10 9 40 40 H 1.09002 * 109.47418 * 301.94947 * 11 10 9 41 41 H 1.09001 * 109.48683 * 180.16704 * 12 11 10 42 42 H 1.09004 * 109.48347 * 60.11467 * 12 11 10 43 43 H 1.08997 * 110.51920 * 335.69140 * 14 13 8 44 44 H 1.09010 * 110.51214 * 212.96795 * 14 13 8 45 45 H 1.08990 * 109.47333 * 210.02224 * 18 17 15 46 46 H 1.08998 * 109.47009 * 330.02581 * 18 17 15 47 47 H 1.08999 * 109.46883 * 300.00278 * 19 18 17 48 48 H 1.09005 * 109.46573 * 60.00203 * 19 18 17 49 49 H 0.97000 * 120.00142 * 180.02562 * 23 22 20 50 50 H 1.08999 * 110.27379 * 102.65992 * 28 17 15 51 51 H 1.09006 * 110.27221 * 224.64492 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7211 1.2494 6 6 3.5419 -0.6148 1.3129 7 8 4.1450 -0.0212 0.4442 8 7 4.2148 -1.1803 2.3346 9 6 3.5077 -1.9806 3.3467 10 6 3.8783 -1.4512 4.7358 11 6 5.4002 -1.4608 4.8966 12 6 6.0293 -0.5296 3.8552 13 6 5.6592 -1.0102 2.4587 14 6 6.3923 -2.3203 2.1215 15 6 6.7381 -2.1804 0.6536 16 8 7.0747 -3.0930 -0.0707 17 7 6.6120 -0.8976 0.2690 18 6 6.8632 -0.4138 -1.0908 19 6 5.5689 -0.4826 -1.9039 20 6 5.8276 0.0145 -3.3028 21 1 6.8162 0.3459 -3.5840 22 6 4.8020 0.0462 -4.2237 23 7 3.5982 -0.3579 -3.8815 24 14 5.1224 0.6630 -5.9576 25 1 6.5483 1.0568 -6.0874 26 1 4.8157 -0.4155 -6.9312 27 1 4.2576 1.8385 -6.2325 28 6 6.1903 -0.0438 1.3883 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7211 -1.5954 -1.2327 33 1 1.7516 -1.7714 1.2058 34 1 1.6054 -0.2615 2.1371 35 1 2.4317 -1.8922 3.1967 36 1 3.8069 -3.0253 3.2615 37 1 3.5077 -0.4322 4.8470 38 1 3.4284 -2.0866 5.4987 39 1 5.6621 -1.1166 5.8971 40 1 5.7746 -2.4741 4.7512 41 1 7.1135 -0.5384 3.9674 42 1 5.6566 0.4842 4.0016 43 1 5.7366 -3.1765 2.2796 44 1 7.2983 -2.4160 2.7200 45 1 7.2127 0.6178 -1.0506 46 1 7.6227 -1.0365 -1.5634 47 1 5.2195 -1.5143 -1.9440 48 1 4.8094 0.1402 -1.4311 49 1 2.8767 -0.3359 -4.5295 50 1 7.0400 0.5186 1.7753 51 1 5.4018 0.6372 1.0676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270415805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:39 Heat of formation + Delta-G solvation = -84.647409 kcal Electronic energy + Delta-G solvation = -33005.041632 eV Core-core repulsion = 28905.720265 eV Total energy + Delta-G solvation = -4099.321367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38757 -38.85204 -37.72089 -36.47909 -35.39672 -33.50838 -33.08945 -32.02617 -31.29191 -29.56841 -28.18109 -28.06624 -26.21494 -24.78237 -23.86754 -22.37520 -21.57119 -20.96705 -20.49626 -18.78094 -18.40382 -16.98061 -16.40790 -16.23807 -15.98981 -15.65445 -15.51083 -14.85625 -14.73339 -14.47655 -14.35200 -14.09835 -13.94353 -13.79982 -13.47605 -13.28708 -13.06446 -12.80918 -12.58102 -12.29786 -12.09390 -12.02698 -11.88790 -11.82811 -11.67632 -11.48182 -11.36904 -11.10314 -10.92813 -10.85845 -10.78951 -10.69882 -10.44151 -10.29728 -9.60563 -9.50995 -9.40988 -9.18817 -8.74542 -8.65856 -8.39985 -7.96134 -7.45260 -5.60910 -3.64326 2.86923 2.95481 3.28906 3.48010 3.54683 3.59276 3.90049 4.27215 4.47627 4.54322 4.65623 4.71110 4.72802 4.83393 4.87166 4.93573 4.99654 5.14034 5.22326 5.33882 5.38643 5.41416 5.47527 5.50781 5.56337 5.59708 5.67614 5.69664 5.70815 5.72898 5.76046 5.85111 5.89888 5.92485 6.07589 6.25071 6.27783 6.40882 6.46807 6.78022 6.86936 7.28889 7.33284 7.52262 7.94685 8.07449 8.32264 8.38988 8.46021 8.72727 8.83238 8.96675 9.46113 9.94162 11.45366 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.004916 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.285731 B = 5693.911409 C = 7432.067497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.113 3.887 3 H 0.099 0.901 4 O -0.497 6.497 5 C -0.170 4.170 6 C 0.500 3.500 7 O -0.456 6.456 8 N -0.609 5.609 9 C 0.108 3.892 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.167 3.833 14 C -0.163 4.163 15 C 0.507 3.493 16 O -0.547 6.547 17 N -0.584 5.584 18 C 0.132 3.868 19 C 0.019 3.981 20 C -0.525 4.525 21 H 0.046 0.954 22 C 0.063 3.937 23 N -0.860 5.860 24 Si 0.877 3.123 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.288 1.288 28 C 0.066 3.934 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.356 0.644 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.007 0.993 48 H 0.060 0.940 49 H 0.251 0.749 50 H 0.051 0.949 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 -0.743 23.557 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.052 3.948 3 H 0.116 0.884 4 O -0.298 6.298 5 C -0.211 4.211 6 C 0.289 3.711 7 O -0.329 6.329 8 N -0.345 5.345 9 C -0.015 4.015 10 C -0.172 4.172 11 C -0.157 4.157 12 C -0.152 4.152 13 C 0.081 3.919 14 C -0.205 4.205 15 C 0.293 3.707 16 O -0.426 6.426 17 N -0.315 5.315 18 C 0.012 3.988 19 C -0.018 4.018 20 C -0.564 4.564 21 H 0.065 0.935 22 C -0.139 4.139 23 N -0.498 5.498 24 Si 0.706 3.294 25 H -0.201 1.201 26 H -0.214 1.214 27 H -0.214 1.214 28 C -0.057 4.057 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.201 0.799 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.026 0.974 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.069 0.931 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.642 -0.258 22.387 22.864 hybrid contribution -0.224 -0.430 -0.606 0.776 sum -4.865 -0.688 21.780 22.328 Atomic orbital electron populations 1.22541 0.97277 1.01910 1.02295 1.21591 0.91242 0.97589 0.84333 0.88353 1.87279 1.75452 1.27007 1.40042 1.22573 0.93364 1.03204 1.01918 1.20749 0.89921 0.79619 0.80774 1.90647 1.67125 1.40338 1.34748 1.47745 1.06519 1.53327 1.26888 1.21733 0.97238 0.95051 0.87431 1.21904 0.96662 1.02099 0.96553 1.21539 0.95152 1.00241 0.98757 1.21703 1.01159 0.99883 0.92474 1.20635 0.80509 0.95093 0.95692 1.22721 1.01960 0.99302 0.96491 1.20620 0.77798 0.83185 0.89103 1.90680 1.49621 1.42579 1.59683 1.48304 1.64925 1.07477 1.10769 1.21755 1.01477 0.97102 0.78460 1.19442 0.91600 0.97987 0.92819 1.21141 0.95241 1.43434 0.96621 0.93542 1.24934 0.95442 0.95949 0.97577 1.70094 1.00071 1.46451 1.33193 0.86787 0.77975 0.78325 0.86302 1.20137 1.21445 1.21421 1.23282 1.01373 0.95564 0.85466 0.92542 0.91520 0.92816 0.79949 0.89431 0.89210 0.89625 0.91565 0.91357 0.90844 0.91506 0.91510 0.90376 0.90894 0.88734 0.88080 0.92477 0.92369 0.97418 0.92173 0.93869 0.93120 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.53 37.16 0.35 -1.69 16 2 C 0.11 1.64 3.13 -26.73 -0.08 1.55 16 3 H 0.10 1.63 7.95 -51.93 -0.41 1.21 16 4 O -0.50 -9.85 12.57 -49.66 -0.62 -10.48 16 5 C -0.17 -1.94 3.73 -27.88 -0.10 -2.04 16 6 C 0.50 7.36 7.43 -10.99 -0.08 7.28 16 7 O -0.46 -8.88 7.35 -8.87 -0.07 -8.94 16 8 N -0.61 -7.19 2.69 -158.10 -0.43 -7.62 16 9 C 0.11 0.87 6.09 -3.59 -0.02 0.84 16 10 C -0.13 -0.82 6.05 -26.61 -0.16 -0.98 16 11 C -0.12 -0.79 5.79 -26.60 -0.15 -0.94 16 12 C -0.11 -0.97 4.68 -27.00 -0.13 -1.10 16 13 C 0.17 2.06 0.87 -131.68 -0.11 1.94 16 14 C -0.16 -2.29 5.40 -27.06 -0.15 -2.44 16 15 C 0.51 10.45 8.04 -10.73 -0.09 10.36 16 16 O -0.55 -13.80 17.59 5.56 0.10 -13.70 16 17 N -0.58 -11.95 2.37 -172.66 -0.41 -12.36 16 18 C 0.13 3.19 5.86 -4.04 -0.02 3.17 16 19 C 0.02 0.54 4.68 -27.88 -0.13 0.41 16 20 C -0.53 -16.08 9.11 -34.44 -0.31 -16.39 16 21 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 22 C 0.06 1.93 5.46 -17.82 -0.10 1.83 16 23 N -0.86 -26.57 13.29 55.43 0.74 -25.84 16 24 Si 0.88 23.00 29.54 -169.99 -5.02 17.98 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 C 0.07 1.05 5.57 -3.44 -0.02 1.03 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.36 6.09 9.05 45.56 0.41 6.50 16 33 H 0.09 0.88 7.81 -51.93 -0.41 0.48 16 34 H 0.09 0.75 7.84 -51.93 -0.41 0.34 16 35 H 0.09 0.55 5.96 -51.93 -0.31 0.24 16 36 H 0.07 0.53 7.42 -51.93 -0.39 0.15 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.45 7.64 -51.93 -0.40 0.05 16 41 H 0.08 0.61 7.95 -51.93 -0.41 0.20 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.28 7.14 -51.93 -0.37 0.91 16 44 H 0.10 1.18 7.74 -51.92 -0.40 0.78 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.06 1.49 7.93 -51.93 -0.41 1.07 16 47 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.06 1.79 5.45 -51.93 -0.28 1.50 16 49 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.05 0.71 7.86 -51.93 -0.41 0.30 16 51 H 0.15 2.73 4.54 -57.59 -0.26 2.47 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -38.54 389.75 -8.95 -47.49 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.80 Total: 4.76 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.31 Total: 2.84 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.10 Total: -45.82 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.59 Total: -33.12 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.54 -8.95 -47.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.157 kcal (2) G-P(sol) polarization free energy of solvation -38.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds