Wall clock time and date at job start Tue Mar 31 2020 21:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47111 * 2 1 4 4 O 1.42900 * 109.47138 * 239.98992 * 2 1 3 5 5 C 1.53005 * 109.46829 * 119.99373 * 2 1 3 6 6 C 1.50702 * 109.47066 * 185.00111 * 5 2 1 7 7 O 1.21275 * 119.99635 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99756 * 180.02562 * 6 5 2 9 9 C 1.47138 * 120.64632 * 4.10450 * 8 6 5 10 10 C 1.53203 * 108.63600 * 232.15027 * 9 8 6 11 11 C 1.53041 * 109.49067 * 304.72591 * 10 9 8 12 12 C 1.53213 * 109.45945 * 61.93908 * 11 10 9 13 13 C 1.45965 * 120.63862 * 184.13369 * 8 6 5 14 14 C 1.53863 * 110.70621 * 251.98823 * 13 8 6 15 15 C 1.51451 * 104.03621 * 94.33326 * 14 13 8 16 16 O 1.21278 * 124.94154 * 195.87865 * 15 14 13 17 17 N 1.34519 * 110.10733 * 15.61331 * 15 14 13 18 18 C 1.46500 * 124.34997 * 180.33936 * 17 15 14 19 19 C 1.53007 * 109.46991 * 90.02168 * 18 17 15 20 20 C 1.50695 * 109.46771 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00452 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99778 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00074 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47079 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46957 * 119.99740 * 24 22 20 27 27 H 1.48497 * 109.47107 * 239.99458 * 24 22 20 28 28 C 1.46952 * 111.29643 * 0.36137 * 17 15 14 29 29 H 1.09000 * 109.47031 * 300.00765 * 1 2 3 30 30 H 1.09004 * 109.46801 * 60.00463 * 1 2 3 31 31 H 1.09001 * 109.47100 * 180.02562 * 1 2 3 32 32 H 0.96697 * 114.00474 * 300.00302 * 4 2 1 33 33 H 1.09000 * 109.46954 * 65.00229 * 5 2 1 34 34 H 1.09002 * 109.47207 * 304.99763 * 5 2 1 35 35 H 1.09001 * 109.61179 * 351.89153 * 9 8 6 36 36 H 1.09002 * 109.60876 * 112.40284 * 9 8 6 37 37 H 1.09002 * 109.46618 * 64.72743 * 10 9 8 38 38 H 1.08998 * 109.47182 * 184.71709 * 10 9 8 39 39 H 1.08996 * 109.47752 * 181.93769 * 11 10 9 40 40 H 1.09002 * 109.47418 * 301.94947 * 11 10 9 41 41 H 1.09001 * 109.48683 * 180.16704 * 12 11 10 42 42 H 1.09004 * 109.48347 * 60.11467 * 12 11 10 43 43 H 1.08997 * 110.51920 * 335.69140 * 14 13 8 44 44 H 1.09010 * 110.51214 * 212.96795 * 14 13 8 45 45 H 1.08990 * 109.47333 * 210.02224 * 18 17 15 46 46 H 1.08998 * 109.47009 * 330.02581 * 18 17 15 47 47 H 1.08999 * 109.46883 * 300.00278 * 19 18 17 48 48 H 1.09005 * 109.46573 * 60.00203 * 19 18 17 49 49 H 0.97000 * 120.00142 * 180.02562 * 23 22 20 50 50 H 1.08999 * 110.27379 * 102.65992 * 28 17 15 51 51 H 1.09006 * 110.27221 * 224.64492 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7211 1.2494 6 6 3.5419 -0.6148 1.3129 7 8 4.1450 -0.0212 0.4442 8 7 4.2148 -1.1803 2.3346 9 6 3.5077 -1.9806 3.3467 10 6 3.8783 -1.4512 4.7358 11 6 5.4002 -1.4608 4.8966 12 6 6.0293 -0.5296 3.8552 13 6 5.6592 -1.0102 2.4587 14 6 6.3923 -2.3203 2.1215 15 6 6.7381 -2.1804 0.6536 16 8 7.0747 -3.0930 -0.0707 17 7 6.6120 -0.8976 0.2690 18 6 6.8632 -0.4138 -1.0908 19 6 5.5689 -0.4826 -1.9039 20 6 5.8276 0.0145 -3.3028 21 1 6.8162 0.3459 -3.5840 22 6 4.8020 0.0462 -4.2237 23 7 3.5982 -0.3579 -3.8815 24 14 5.1224 0.6630 -5.9576 25 1 6.5483 1.0568 -6.0874 26 1 4.8157 -0.4155 -6.9312 27 1 4.2576 1.8385 -6.2325 28 6 6.1903 -0.0438 1.3883 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7211 -1.5954 -1.2327 33 1 1.7516 -1.7714 1.2058 34 1 1.6054 -0.2615 2.1371 35 1 2.4317 -1.8922 3.1967 36 1 3.8069 -3.0253 3.2615 37 1 3.5077 -0.4322 4.8470 38 1 3.4284 -2.0866 5.4987 39 1 5.6621 -1.1166 5.8971 40 1 5.7746 -2.4741 4.7512 41 1 7.1135 -0.5384 3.9674 42 1 5.6566 0.4842 4.0016 43 1 5.7366 -3.1765 2.2796 44 1 7.2983 -2.4160 2.7200 45 1 7.2127 0.6178 -1.0506 46 1 7.6227 -1.0365 -1.5634 47 1 5.2195 -1.5143 -1.9440 48 1 4.8094 0.1402 -1.4311 49 1 2.8767 -0.3359 -4.5295 50 1 7.0400 0.5186 1.7753 51 1 5.4018 0.6372 1.0676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270415805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:38 Heat of formation + Delta-G solvation = -113.527989 kcal Electronic energy + Delta-G solvation = -33006.293988 eV Core-core repulsion = 28905.720265 eV Total energy + Delta-G solvation = -4100.573723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53104 -40.26702 -38.82943 -37.69772 -37.01558 -35.41607 -34.07339 -33.64035 -32.48746 -31.18718 -29.54137 -29.04302 -27.50975 -26.40773 -24.99206 -23.43217 -23.06885 -22.39703 -21.55030 -20.23092 -19.55338 -18.46482 -17.93894 -17.60620 -17.26077 -17.11817 -16.83398 -16.45878 -16.09010 -15.97907 -15.59699 -15.14189 -14.90825 -14.75195 -14.65599 -14.58689 -14.23185 -14.19040 -14.03206 -13.80654 -13.68616 -13.21890 -13.10708 -12.93997 -12.86424 -12.81247 -12.76389 -12.53299 -12.40577 -12.21084 -11.87697 -11.75997 -11.65809 -11.54528 -11.41196 -11.33044 -11.15414 -10.74290 -10.68267 -10.36373 -9.97376 -9.53788 -9.01701 -7.96240 -6.10957 1.37310 1.38835 1.50819 1.63279 1.83039 2.04488 2.30624 2.50395 3.27973 3.28319 3.40047 3.67905 3.77843 3.81815 3.94724 4.05075 4.10629 4.22701 4.27984 4.33510 4.38293 4.45794 4.50315 4.55256 4.60505 4.64691 4.66871 4.72125 4.76430 4.83627 4.94885 4.99505 5.05698 5.09278 5.15548 5.17401 5.26167 5.30381 5.33045 5.37935 5.51330 5.57205 5.68543 5.80674 5.94066 6.18312 6.38026 6.49333 6.56927 6.99889 7.18433 7.29068 7.52005 7.59968 9.08651 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.004916 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.285731 B = 5693.911409 C = 7432.067497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 H 0.066 0.934 4 O -0.544 6.544 5 C -0.155 4.155 6 C 0.487 3.513 7 O -0.515 6.515 8 N -0.605 5.605 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.117 4.117 12 C -0.106 4.106 13 C 0.176 3.824 14 C -0.144 4.144 15 C 0.486 3.514 16 O -0.607 6.607 17 N -0.588 5.588 18 C 0.143 3.857 19 C 0.047 3.953 20 C -0.562 4.562 21 H 0.045 0.955 22 C 0.011 3.989 23 N -0.881 5.881 24 Si 0.953 3.047 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.276 1.276 28 C 0.058 3.942 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.360 0.640 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.135 0.865 45 H 0.070 0.930 46 H 0.035 0.965 47 H -0.049 1.049 48 H 0.048 0.952 49 H 0.255 0.745 50 H 0.074 0.926 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.174 -0.530 27.038 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 H 0.084 0.916 4 O -0.347 6.347 5 C -0.195 4.195 6 C 0.277 3.723 7 O -0.392 6.392 8 N -0.340 5.340 9 C -0.022 4.022 10 C -0.165 4.165 11 C -0.155 4.155 12 C -0.145 4.145 13 C 0.090 3.910 14 C -0.185 4.185 15 C 0.275 3.725 16 O -0.491 6.491 17 N -0.317 5.317 18 C 0.021 3.979 19 C 0.009 3.991 20 C -0.601 4.601 21 H 0.064 0.936 22 C -0.190 4.190 23 N -0.518 5.518 24 Si 0.778 3.222 25 H -0.194 1.194 26 H -0.207 1.207 27 H -0.202 1.202 28 C -0.063 4.063 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.205 0.795 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.153 0.847 45 H 0.088 0.912 46 H 0.053 0.947 47 H -0.031 1.031 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.596 -0.039 25.963 26.559 hybrid contribution 0.026 -0.487 -1.685 1.754 sum -5.571 -0.526 24.278 24.915 Atomic orbital electron populations 1.22386 0.94346 1.03154 1.02755 1.21680 0.93414 0.95884 0.84310 0.91595 1.87223 1.76753 1.27599 1.43106 1.22453 0.91153 1.04192 1.01700 1.21388 0.91374 0.78952 0.80541 1.90633 1.68436 1.43027 1.37104 1.47880 1.06439 1.52780 1.26868 1.22102 0.98063 0.94585 0.87471 1.21886 0.96489 1.02676 0.95451 1.21571 0.95269 0.99791 0.98863 1.21709 1.02282 1.00570 0.89904 1.20698 0.80754 0.92805 0.96780 1.22726 1.03808 1.00670 0.91329 1.21864 0.76524 0.82217 0.91855 1.90628 1.52191 1.44175 1.62081 1.48340 1.64488 1.08654 1.10194 1.21272 0.98540 0.97419 0.80639 1.19060 0.93131 0.93798 0.93090 1.21515 0.95588 1.44827 0.98156 0.93641 1.25821 0.95140 0.95846 1.02182 1.70268 1.00741 1.46172 1.34661 0.85607 0.78239 0.78002 0.80328 1.19399 1.20716 1.20190 1.23475 1.01930 0.95936 0.85006 0.89444 0.93631 0.91116 0.79467 0.87541 0.85012 0.87711 0.91289 0.91106 0.88395 0.89450 0.91230 0.89084 0.90386 0.87716 0.84721 0.91161 0.94694 1.03081 0.93436 0.93658 0.90835 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 9.53 71.98 0.69 -2.94 16 2 C 0.11 3.19 3.13 30.60 0.10 3.29 16 3 H 0.07 2.35 7.95 -2.39 -0.02 2.33 16 4 O -0.54 -23.19 12.57 -135.18 -1.70 -24.89 16 5 C -0.16 -3.33 3.73 29.85 0.11 -3.22 16 6 C 0.49 14.35 7.43 87.66 0.65 15.00 16 7 O -0.52 -21.26 7.35 10.78 0.08 -21.18 16 8 N -0.61 -13.19 2.69 -772.51 -2.08 -15.27 16 9 C 0.10 1.20 6.09 86.33 0.53 1.73 16 10 C -0.13 -0.91 6.05 30.68 0.19 -0.72 16 11 C -0.12 -0.96 5.79 30.68 0.18 -0.78 16 12 C -0.11 -1.40 4.68 30.42 0.14 -1.26 16 13 C 0.18 4.01 0.87 3.98 0.00 4.01 16 14 C -0.14 -3.84 5.40 30.38 0.16 -3.67 16 15 C 0.49 20.81 8.04 87.94 0.71 21.52 16 16 O -0.61 -32.55 17.59 -3.02 -0.05 -32.60 16 17 N -0.59 -25.24 2.37 -818.71 -1.94 -27.18 16 18 C 0.14 7.44 5.86 86.38 0.51 7.95 16 19 C 0.05 2.88 4.68 29.85 0.14 3.02 16 20 C -0.56 -36.29 9.11 25.60 0.23 -36.06 16 21 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 22 C 0.01 0.71 5.46 84.65 0.46 1.17 16 23 N -0.88 -56.87 13.29 21.45 0.28 -56.58 16 24 Si 0.95 48.62 29.54 68.60 2.03 50.65 16 25 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 26 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 28 C 0.06 1.85 5.57 86.52 0.48 2.33 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.36 13.38 9.05 -74.06 -0.67 12.71 16 33 H 0.11 1.91 7.81 -2.39 -0.02 1.89 16 34 H 0.13 1.70 7.84 -2.39 -0.02 1.68 16 35 H 0.10 0.88 5.96 -2.39 -0.01 0.86 16 36 H 0.07 0.85 7.42 -2.39 -0.02 0.83 16 37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.58 7.64 -2.39 -0.02 0.56 16 41 H 0.09 1.02 7.95 -2.39 -0.02 1.00 16 42 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.10 2.62 7.14 -2.39 -0.02 2.60 16 44 H 0.13 2.70 7.74 -2.38 -0.02 2.69 16 45 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.03 1.93 7.93 -2.39 -0.02 1.91 16 47 H -0.05 -3.53 8.14 -2.39 -0.02 -3.55 16 48 H 0.05 3.06 5.45 -2.38 -0.01 3.04 16 49 H 0.25 15.52 8.31 -92.71 -0.77 14.74 16 50 H 0.07 1.98 7.86 -2.39 -0.02 1.97 16 51 H 0.13 5.02 4.54 -92.15 -0.42 4.60 16 Total: -1.00 -94.18 389.75 1.75 -92.43 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.15 Total: 23.26 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 5.27 Total: 11.36 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -3.73 Total: -99.03 kcal Atomic # 8 Polarization: -77.00 SS G_CDS: -1.67 Total: -78.67 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -94.18 1.75 -92.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.093 kcal (2) G-P(sol) polarization free energy of solvation -94.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds