Wall clock time and date at job start Tue Mar 31 2020 21:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 O 1.42894 * 109.46996 * 239.99774 * 2 1 3 5 5 C 1.53000 * 109.46952 * 119.99917 * 2 1 3 6 6 C 1.50695 * 109.46996 * 185.00089 * 5 2 1 7 7 O 1.21280 * 119.99917 * 359.97438 * 6 5 2 8 8 N 1.34781 * 120.00114 * 180.02562 * 6 5 2 9 9 C 1.47141 * 120.64107 * 5.11307 * 8 6 5 10 10 C 1.53194 * 108.62588 * 232.12581 * 9 8 6 11 11 C 1.53063 * 109.47997 * 304.72144 * 10 9 8 12 12 C 1.53205 * 109.45639 * 61.95151 * 11 10 9 13 13 C 1.45983 * 120.64127 * 185.08671 * 8 6 5 14 14 C 1.53969 * 110.74296 * 5.28029 * 13 8 6 15 15 C 1.51455 * 104.08390 * 265.62935 * 14 13 8 16 16 O 1.21275 * 124.94714 * 164.44958 * 15 14 13 17 17 N 1.34524 * 110.10942 * 344.46940 * 15 14 13 18 18 C 1.46501 * 124.34978 * 179.59644 * 17 15 14 19 19 C 1.52999 * 109.47091 * 270.02453 * 18 17 15 20 20 C 1.50697 * 109.46994 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00360 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99969 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00026 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00240 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46845 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47050 * 119.99706 * 24 22 20 27 27 H 1.48502 * 109.47052 * 239.99909 * 24 22 20 28 28 C 1.46937 * 111.29534 * 359.61830 * 17 15 14 29 29 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46730 * 299.99999 * 1 2 3 31 31 H 1.08997 * 109.46999 * 59.99629 * 1 2 3 32 32 H 0.96708 * 113.99506 * 60.00246 * 4 2 1 33 33 H 1.09004 * 109.46892 * 64.99989 * 5 2 1 34 34 H 1.09001 * 109.47018 * 304.99791 * 5 2 1 35 35 H 1.09001 * 109.60854 * 351.86306 * 9 8 6 36 36 H 1.08994 * 109.61312 * 112.20447 * 9 8 6 37 37 H 1.08999 * 109.47156 * 64.72655 * 10 9 8 38 38 H 1.08997 * 109.46619 * 184.72623 * 10 9 8 39 39 H 1.09000 * 109.47383 * 181.94484 * 11 10 9 40 40 H 1.08999 * 109.47623 * 301.96042 * 11 10 9 41 41 H 1.08996 * 109.48679 * 180.14249 * 12 11 10 42 42 H 1.08996 * 109.48322 * 60.08393 * 12 11 10 43 43 H 1.09001 * 110.43852 * 147.00406 * 14 13 8 44 44 H 1.09003 * 110.66507 * 24.36932 * 14 13 8 45 45 H 1.09003 * 109.46784 * 30.02542 * 18 17 15 46 46 H 1.08994 * 109.46788 * 150.02427 * 18 17 15 47 47 H 1.09000 * 109.46871 * 300.00273 * 19 18 17 48 48 H 1.09005 * 109.47306 * 59.99813 * 19 18 17 49 49 H 0.96999 * 120.00114 * 180.02562 * 23 22 20 50 50 H 1.08998 * 110.27626 * 135.26843 * 28 17 15 51 51 H 1.09003 * 110.27456 * 257.25124 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6149 1.3128 7 8 4.1450 -0.0211 0.4441 8 7 4.2150 -1.1805 2.3344 9 6 3.5112 -1.9991 3.3342 10 6 3.8651 -1.4776 4.7304 11 6 5.3861 -1.4690 4.9017 12 6 6.0101 -0.5202 3.8733 13 6 5.6564 -0.9932 2.4700 14 6 6.1802 -0.0069 1.4101 15 6 6.6409 -0.8966 0.2744 16 8 6.8720 -0.5185 -0.8545 17 7 6.7561 -2.1675 0.7000 18 6 7.1726 -3.2883 -0.1466 19 6 5.9409 -3.9216 -0.7967 20 6 6.3694 -5.0749 -1.6671 21 1 7.4156 -5.3302 -1.7488 22 6 5.4258 -5.8033 -2.3599 23 7 4.1519 -5.4921 -2.2609 24 14 5.9569 -7.2324 -3.4394 25 1 7.4339 -7.3749 -3.3806 26 1 5.3188 -8.4826 -2.9547 27 1 5.5403 -6.9752 -4.8414 28 6 6.4099 -2.2872 2.1230 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7210 -0.2701 -1.9979 33 1 1.7516 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1370 35 1 2.4352 -1.9233 3.1772 36 1 3.8222 -3.0395 3.2397 37 1 3.4805 -0.4645 4.8481 38 1 3.4184 -2.1257 5.4843 39 1 5.6367 -1.1306 5.9071 40 1 5.7746 -2.4759 4.7497 41 1 7.0935 -0.5157 3.9931 42 1 5.6228 0.4871 4.0259 43 1 7.0159 0.5697 1.8068 44 1 5.3834 0.6576 1.0758 45 1 7.8474 -2.9263 -0.9224 46 1 7.6853 -4.0327 0.4625 47 1 5.2662 -4.2835 -0.0209 48 1 5.4282 -3.1771 -1.4058 49 1 3.4880 -6.0048 -2.7481 50 1 5.7677 -3.1530 2.2839 51 1 7.3141 -2.3711 2.7259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270415811.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:48 Heat of formation + Delta-G solvation = -96.197546 kcal Electronic energy + Delta-G solvation = -32421.518399 eV Core-core repulsion = 28321.696180 eV Total energy + Delta-G solvation = -4099.822219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41165 -38.87651 -37.79027 -36.76384 -35.29116 -33.83502 -33.13843 -32.29525 -31.72176 -29.71354 -28.37801 -27.67373 -26.56775 -24.81124 -23.95578 -22.52628 -21.73463 -21.09269 -20.38449 -18.97337 -18.24213 -17.34323 -16.99005 -16.55787 -16.22212 -15.77347 -15.14747 -15.03856 -14.69528 -14.53844 -14.48751 -14.27700 -14.08750 -13.80997 -13.65487 -13.09698 -12.89245 -12.83447 -12.64295 -12.44119 -12.42820 -12.30650 -12.13418 -11.99128 -11.89003 -11.53621 -11.35854 -11.23167 -11.04571 -10.89123 -10.86589 -10.77866 -10.75840 -10.58819 -9.84575 -9.76500 -9.75999 -9.16603 -8.88149 -8.74499 -8.43454 -8.26630 -7.75341 -5.90698 -3.94205 2.71031 2.92930 3.36074 3.42991 3.46733 3.50910 3.83060 4.26055 4.33465 4.51432 4.54022 4.60009 4.65615 4.72786 4.79824 4.86553 4.97916 5.12988 5.16836 5.28539 5.29813 5.38085 5.39892 5.44288 5.46303 5.51482 5.60971 5.71829 5.73753 5.74569 5.78447 5.80279 5.86690 5.89610 5.92843 6.08287 6.10601 6.18154 6.36085 6.62006 6.86063 6.98573 7.25671 7.45303 7.70934 7.85593 7.96607 8.07822 8.13249 8.40430 8.47201 9.04597 9.14464 9.68724 11.20141 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009288 B = 0.004582 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.947296 B = 6108.749054 C = 7414.651497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.115 3.885 3 H 0.058 0.942 4 O -0.544 6.544 5 C -0.135 4.135 6 C 0.520 3.480 7 O -0.497 6.497 8 N -0.601 5.601 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.122 4.122 12 C -0.112 4.112 13 C 0.164 3.836 14 C -0.191 4.191 15 C 0.534 3.466 16 O -0.532 6.532 17 N -0.617 5.617 18 C 0.130 3.870 19 C 0.017 3.983 20 C -0.520 4.520 21 H 0.056 0.944 22 C 0.059 3.941 23 N -0.889 5.889 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.098 3.902 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.375 0.625 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.168 0.832 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.022 0.978 49 H 0.258 0.742 50 H 0.077 0.923 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 11.924 19.151 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.056 3.944 3 H 0.076 0.924 4 O -0.348 6.348 5 C -0.175 4.175 6 C 0.310 3.690 7 O -0.373 6.373 8 N -0.335 5.335 9 C -0.018 4.018 10 C -0.171 4.171 11 C -0.159 4.159 12 C -0.151 4.151 13 C 0.079 3.921 14 C -0.230 4.230 15 C 0.321 3.679 16 O -0.409 6.409 17 N -0.352 5.352 18 C 0.010 3.990 19 C -0.021 4.021 20 C -0.559 4.559 21 H 0.074 0.926 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.210 1.210 28 C -0.027 4.027 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.184 0.816 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.030 0.970 48 H 0.041 0.959 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.657 11.926 18.405 22.649 hybrid contribution -0.211 -0.839 -0.808 1.183 sum -5.868 11.087 17.598 21.611 Atomic orbital electron populations 1.22552 0.96596 1.02948 1.02278 1.21392 0.91642 0.95402 0.86009 0.92370 1.86760 1.76777 1.56179 1.15115 1.21806 0.92877 1.04236 0.98592 1.20561 0.89869 0.78178 0.80435 1.90510 1.67757 1.42544 1.36476 1.47677 1.07067 1.51674 1.27105 1.21827 0.97385 0.95257 0.87343 1.21906 0.96723 1.02029 0.96464 1.21574 0.95200 1.00323 0.98848 1.21709 1.01358 0.99758 0.92273 1.20697 0.80356 0.95434 0.95658 1.23715 1.04741 1.00168 0.94404 1.20458 0.76004 0.82809 0.88600 1.90646 1.51427 1.77786 1.20992 1.48512 1.67778 1.08989 1.09877 1.21709 0.99487 0.85476 0.92322 1.19343 0.92096 0.95304 0.95383 1.21144 0.93318 1.13959 1.27485 0.92603 1.25001 0.94929 0.97601 0.96732 1.70018 1.00271 1.40073 1.42389 0.86541 0.78739 0.82237 0.80497 1.19718 1.21102 1.20998 1.22301 0.98704 0.98288 0.83381 0.91610 0.91903 0.92111 0.77844 0.87951 0.88124 0.89483 0.90786 0.91439 0.90575 0.91389 0.91261 0.90227 0.90911 0.89856 0.81604 0.91375 0.92178 0.97031 0.95915 0.93186 0.90476 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 9.53 37.16 0.35 -1.39 16 2 C 0.12 1.47 3.13 -26.73 -0.08 1.39 16 3 H 0.06 0.74 7.96 -51.93 -0.41 0.32 16 4 O -0.54 -9.37 12.55 -49.66 -0.62 -9.99 16 5 C -0.14 -1.63 3.76 -27.89 -0.10 -1.73 16 6 C 0.52 8.06 7.41 -10.99 -0.08 7.98 16 7 O -0.50 -9.75 10.22 -8.87 -0.09 -9.84 16 8 N -0.60 -7.79 2.69 -158.02 -0.43 -8.22 16 9 C 0.10 0.97 6.09 -3.59 -0.02 0.95 16 10 C -0.13 -0.89 6.05 -26.60 -0.16 -1.05 16 11 C -0.12 -0.86 5.79 -26.59 -0.15 -1.02 16 12 C -0.11 -1.00 4.69 -27.01 -0.13 -1.12 16 13 C 0.16 2.16 0.87 -131.61 -0.11 2.05 16 14 C -0.19 -3.15 5.37 -27.01 -0.15 -3.29 16 15 C 0.53 11.80 6.83 -10.73 -0.07 11.73 16 16 O -0.53 -14.33 17.59 5.56 0.10 -14.23 16 17 N -0.62 -12.80 2.94 -172.65 -0.51 -13.31 16 18 C 0.13 3.08 5.88 -4.04 -0.02 3.05 16 19 C 0.02 0.48 5.30 -27.88 -0.15 0.33 16 20 C -0.52 -15.62 9.11 -34.44 -0.31 -15.94 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -28.08 13.29 55.43 0.74 -27.35 16 24 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.10 1.51 5.92 -3.43 -0.02 1.49 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.38 4.95 9.08 45.56 0.41 5.37 16 33 H 0.10 1.29 7.77 -51.93 -0.40 0.89 16 34 H 0.10 0.80 7.88 -51.93 -0.41 0.39 16 35 H 0.09 0.66 5.95 -51.93 -0.31 0.35 16 36 H 0.07 0.76 7.42 -51.93 -0.39 0.37 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.52 7.65 -51.93 -0.40 0.12 16 41 H 0.08 0.64 7.94 -51.93 -0.41 0.23 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.16 7.87 -51.93 -0.41 0.75 16 44 H 0.17 3.00 4.52 -57.65 -0.26 2.74 16 45 H 0.07 1.70 7.93 -51.93 -0.41 1.29 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 50 H 0.08 1.22 7.13 -51.93 -0.37 0.85 16 51 H 0.07 0.88 7.73 -51.93 -0.40 0.48 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -40.65 395.64 -9.12 -49.77 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.94 Total: 4.56 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.31 Total: 5.10 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.20 Total: -48.88 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.62 Total: -34.07 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -40.65 -9.12 -49.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415811.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.425 kcal (2) G-P(sol) polarization free energy of solvation -40.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds