Wall clock time and date at job start Tue Mar 31 2020 21:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 O 1.42894 * 109.46996 * 239.99774 * 2 1 3 5 5 C 1.53000 * 109.46952 * 119.99917 * 2 1 3 6 6 C 1.50695 * 109.46996 * 185.00089 * 5 2 1 7 7 O 1.21280 * 119.99917 * 359.97438 * 6 5 2 8 8 N 1.34781 * 120.00114 * 180.02562 * 6 5 2 9 9 C 1.47141 * 120.64107 * 5.11307 * 8 6 5 10 10 C 1.53194 * 108.62588 * 232.12581 * 9 8 6 11 11 C 1.53063 * 109.47997 * 304.72144 * 10 9 8 12 12 C 1.53205 * 109.45639 * 61.95151 * 11 10 9 13 13 C 1.45983 * 120.64127 * 185.08671 * 8 6 5 14 14 C 1.53969 * 110.74296 * 5.28029 * 13 8 6 15 15 C 1.51455 * 104.08390 * 265.62935 * 14 13 8 16 16 O 1.21275 * 124.94714 * 164.44958 * 15 14 13 17 17 N 1.34524 * 110.10942 * 344.46940 * 15 14 13 18 18 C 1.46501 * 124.34978 * 179.59644 * 17 15 14 19 19 C 1.52999 * 109.47091 * 270.02453 * 18 17 15 20 20 C 1.50697 * 109.46994 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00360 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99969 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00026 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00240 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46845 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47050 * 119.99706 * 24 22 20 27 27 H 1.48502 * 109.47052 * 239.99909 * 24 22 20 28 28 C 1.46937 * 111.29534 * 359.61830 * 17 15 14 29 29 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46730 * 299.99999 * 1 2 3 31 31 H 1.08997 * 109.46999 * 59.99629 * 1 2 3 32 32 H 0.96708 * 113.99506 * 60.00246 * 4 2 1 33 33 H 1.09004 * 109.46892 * 64.99989 * 5 2 1 34 34 H 1.09001 * 109.47018 * 304.99791 * 5 2 1 35 35 H 1.09001 * 109.60854 * 351.86306 * 9 8 6 36 36 H 1.08994 * 109.61312 * 112.20447 * 9 8 6 37 37 H 1.08999 * 109.47156 * 64.72655 * 10 9 8 38 38 H 1.08997 * 109.46619 * 184.72623 * 10 9 8 39 39 H 1.09000 * 109.47383 * 181.94484 * 11 10 9 40 40 H 1.08999 * 109.47623 * 301.96042 * 11 10 9 41 41 H 1.08996 * 109.48679 * 180.14249 * 12 11 10 42 42 H 1.08996 * 109.48322 * 60.08393 * 12 11 10 43 43 H 1.09001 * 110.43852 * 147.00406 * 14 13 8 44 44 H 1.09003 * 110.66507 * 24.36932 * 14 13 8 45 45 H 1.09003 * 109.46784 * 30.02542 * 18 17 15 46 46 H 1.08994 * 109.46788 * 150.02427 * 18 17 15 47 47 H 1.09000 * 109.46871 * 300.00273 * 19 18 17 48 48 H 1.09005 * 109.47306 * 59.99813 * 19 18 17 49 49 H 0.96999 * 120.00114 * 180.02562 * 23 22 20 50 50 H 1.08998 * 110.27626 * 135.26843 * 28 17 15 51 51 H 1.09003 * 110.27456 * 257.25124 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6149 1.3128 7 8 4.1450 -0.0211 0.4441 8 7 4.2150 -1.1805 2.3344 9 6 3.5112 -1.9991 3.3342 10 6 3.8651 -1.4776 4.7304 11 6 5.3861 -1.4690 4.9017 12 6 6.0101 -0.5202 3.8733 13 6 5.6564 -0.9932 2.4700 14 6 6.1802 -0.0069 1.4101 15 6 6.6409 -0.8966 0.2744 16 8 6.8720 -0.5185 -0.8545 17 7 6.7561 -2.1675 0.7000 18 6 7.1726 -3.2883 -0.1466 19 6 5.9409 -3.9216 -0.7967 20 6 6.3694 -5.0749 -1.6671 21 1 7.4156 -5.3302 -1.7488 22 6 5.4258 -5.8033 -2.3599 23 7 4.1519 -5.4921 -2.2609 24 14 5.9569 -7.2324 -3.4394 25 1 7.4339 -7.3749 -3.3806 26 1 5.3188 -8.4826 -2.9547 27 1 5.5403 -6.9752 -4.8414 28 6 6.4099 -2.2872 2.1230 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7210 -0.2701 -1.9979 33 1 1.7516 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1370 35 1 2.4352 -1.9233 3.1772 36 1 3.8222 -3.0395 3.2397 37 1 3.4805 -0.4645 4.8481 38 1 3.4184 -2.1257 5.4843 39 1 5.6367 -1.1306 5.9071 40 1 5.7746 -2.4759 4.7497 41 1 7.0935 -0.5157 3.9931 42 1 5.6228 0.4871 4.0259 43 1 7.0159 0.5697 1.8068 44 1 5.3834 0.6576 1.0758 45 1 7.8474 -2.9263 -0.9224 46 1 7.6853 -4.0327 0.4625 47 1 5.2662 -4.2835 -0.0209 48 1 5.4282 -3.1771 -1.4058 49 1 3.4880 -6.0048 -2.7481 50 1 5.7677 -3.1530 2.2839 51 1 7.3141 -2.3711 2.7259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270415811.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:47 Heat of formation + Delta-G solvation = -127.466802 kcal Electronic energy + Delta-G solvation = -32422.874336 eV Core-core repulsion = 28321.696180 eV Total energy + Delta-G solvation = -4101.178155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61228 -40.32733 -38.95745 -37.93057 -36.97943 -35.68377 -34.37544 -33.75299 -32.84856 -31.44762 -29.43498 -28.88786 -27.94538 -26.52244 -25.05301 -23.57553 -23.34404 -22.39784 -21.42675 -20.50465 -19.40970 -18.71018 -18.49234 -18.09464 -17.63821 -17.27588 -16.68374 -16.33105 -16.29003 -16.04939 -15.47635 -15.33511 -15.19153 -14.94326 -14.70838 -14.59569 -14.38286 -14.20184 -14.06201 -13.87719 -13.73539 -13.46171 -13.37163 -13.15401 -13.04762 -12.91006 -12.80697 -12.71116 -12.54103 -12.19456 -12.01069 -11.92290 -11.88539 -11.76280 -11.55980 -11.43902 -11.41064 -10.89073 -10.68737 -10.62426 -9.91060 -9.72576 -9.39667 -8.25117 -6.40414 1.34536 1.37848 1.49206 1.51485 1.83701 1.95363 2.20579 2.39700 3.06520 3.21330 3.35222 3.46085 3.65527 3.73105 3.86477 3.97490 4.06424 4.17112 4.21617 4.25674 4.29674 4.35122 4.40953 4.44946 4.55903 4.58738 4.61412 4.63428 4.65509 4.76864 4.83259 4.95463 4.98470 5.00111 5.04230 5.10713 5.15415 5.25464 5.28362 5.28932 5.30884 5.40480 5.53399 5.58620 5.76472 5.81574 6.11650 6.34116 6.40938 6.74733 6.90248 7.25759 7.29076 7.33989 8.86989 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009288 B = 0.004582 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.947296 B = 6108.749054 C = 7414.651497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 H 0.054 0.946 4 O -0.590 6.590 5 C -0.131 4.131 6 C 0.503 3.497 7 O -0.550 6.550 8 N -0.601 5.601 9 C 0.095 3.905 10 C -0.124 4.124 11 C -0.121 4.121 12 C -0.104 4.104 13 C 0.171 3.829 14 C -0.181 4.181 15 C 0.516 3.484 16 O -0.598 6.598 17 N -0.623 5.623 18 C 0.142 3.858 19 C 0.038 3.962 20 C -0.548 4.548 21 H 0.067 0.933 22 C 0.000 4.000 23 N -0.930 5.930 24 Si 0.975 3.025 25 H -0.258 1.258 26 H -0.269 1.269 27 H -0.282 1.282 28 C 0.091 3.909 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.384 0.616 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.156 0.844 45 H 0.047 0.953 46 H 0.092 0.908 47 H -0.008 1.008 48 H -0.042 1.042 49 H 0.264 0.736 50 H 0.070 0.930 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 11.233 22.806 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.047 3.953 3 H 0.072 0.928 4 O -0.397 6.397 5 C -0.170 4.170 6 C 0.294 3.706 7 O -0.430 6.430 8 N -0.333 5.333 9 C -0.026 4.026 10 C -0.162 4.162 11 C -0.158 4.158 12 C -0.142 4.142 13 C 0.085 3.915 14 C -0.220 4.220 15 C 0.306 3.694 16 O -0.479 6.479 17 N -0.356 5.356 18 C 0.020 3.980 19 C 0.000 4.000 20 C -0.586 4.586 21 H 0.085 0.915 22 C -0.199 4.199 23 N -0.569 5.569 24 Si 0.798 3.202 25 H -0.182 1.182 26 H -0.194 1.194 27 H -0.207 1.207 28 C -0.032 4.032 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.112 0.888 34 H 0.168 0.832 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.131 0.869 44 H 0.172 0.828 45 H 0.065 0.935 46 H 0.110 0.890 47 H 0.010 0.990 48 H -0.024 1.024 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.803 11.213 22.163 25.507 hybrid contribution -0.218 -0.626 -1.962 2.071 sum -6.022 10.587 20.201 23.589 Atomic orbital electron populations 1.22433 0.93552 1.02985 1.04121 1.21696 0.93977 0.94884 0.84759 0.92765 1.86718 1.78113 1.57803 1.17045 1.21920 0.90764 1.04076 1.00272 1.21287 0.91432 0.77754 0.80164 1.90512 1.69014 1.45029 1.38459 1.47880 1.07220 1.51126 1.27086 1.22152 0.98136 0.94111 0.88236 1.21883 0.96771 1.02998 0.94514 1.21612 0.95147 0.99656 0.99389 1.21725 1.02687 1.00676 0.89114 1.20857 0.80315 0.92932 0.97386 1.23601 1.05386 0.99813 0.93192 1.21577 0.74759 0.83965 0.89104 1.90582 1.54174 1.79104 1.24090 1.48630 1.67070 1.07851 1.12011 1.21322 0.96822 0.86914 0.92912 1.19054 0.93210 0.93738 0.94037 1.21553 0.94089 1.14570 1.28412 0.91500 1.26103 0.94743 1.00909 0.98105 1.70179 1.01811 1.41589 1.43305 0.85260 0.79089 0.78074 0.77738 1.18162 1.19377 1.20748 1.22738 1.00721 0.99437 0.80329 0.92365 0.88833 0.91500 0.76822 0.88813 0.83205 0.87798 0.92090 0.90308 0.88316 0.88802 0.91602 0.88606 0.89694 0.86876 0.82799 0.93470 0.88955 0.99003 1.02364 0.92737 0.91113 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.53 71.98 0.69 -2.41 16 2 C 0.11 2.79 3.13 30.60 0.10 2.88 16 3 H 0.05 1.45 7.96 -2.39 -0.02 1.43 16 4 O -0.59 -22.26 12.55 -135.18 -1.70 -23.96 16 5 C -0.13 -3.13 3.76 29.85 0.11 -3.02 16 6 C 0.50 16.03 7.41 87.65 0.65 16.68 16 7 O -0.55 -23.12 10.22 10.77 0.11 -23.01 16 8 N -0.60 -15.14 2.69 -772.25 -2.08 -17.22 16 9 C 0.09 1.57 6.09 86.32 0.53 2.10 16 10 C -0.12 -1.12 6.05 30.68 0.19 -0.93 16 11 C -0.12 -1.15 5.79 30.68 0.18 -0.98 16 12 C -0.10 -1.43 4.69 30.42 0.14 -1.29 16 13 C 0.17 4.27 0.87 4.02 0.00 4.28 16 14 C -0.18 -6.04 5.37 30.42 0.16 -5.87 16 15 C 0.52 24.15 6.83 87.94 0.60 24.75 16 16 O -0.60 -34.96 17.59 -3.01 -0.05 -35.02 16 17 N -0.62 -26.83 2.94 -818.68 -2.41 -29.24 16 18 C 0.14 7.03 5.88 86.38 0.51 7.53 16 19 C 0.04 2.29 5.30 29.85 0.16 2.45 16 20 C -0.55 -34.03 9.11 25.60 0.23 -33.80 16 21 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 22 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 23 N -0.93 -60.90 13.29 21.45 0.28 -60.62 16 24 Si 0.98 46.85 29.54 68.60 2.03 48.88 16 25 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 28 C 0.09 2.70 5.92 86.54 0.51 3.21 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.38 11.53 9.08 -74.05 -0.67 10.86 16 33 H 0.09 2.41 7.77 -2.38 -0.02 2.39 16 34 H 0.15 1.96 7.88 -2.39 -0.02 1.94 16 35 H 0.10 1.34 5.95 -2.39 -0.01 1.32 16 36 H 0.06 1.18 7.42 -2.39 -0.02 1.16 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.71 7.65 -2.39 -0.02 0.69 16 41 H 0.10 1.08 7.94 -2.39 -0.02 1.06 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.11 3.01 7.87 -2.39 -0.02 2.99 16 44 H 0.16 5.82 4.52 -92.93 -0.42 5.40 16 45 H 0.05 2.50 7.93 -2.39 -0.02 2.48 16 46 H 0.09 3.93 8.14 -2.39 -0.02 3.91 16 47 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 48 H -0.04 -3.08 8.14 -2.38 -0.02 -3.10 16 49 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 50 H 0.07 2.21 7.13 -2.39 -0.02 2.19 16 51 H 0.11 2.42 7.73 -2.39 -0.02 2.40 16 Total: -1.00 -98.88 395.64 1.24 -97.64 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.16 Total: 26.52 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 5.22 Total: 16.03 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -4.20 Total: -107.08 kcal Atomic # 8 Polarization: -80.35 SS G_CDS: -1.64 Total: -81.99 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -98.88 1.24 -97.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415811.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.827 kcal (2) G-P(sol) polarization free energy of solvation -98.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds