Wall clock time and date at job start Tue Mar 31 2020 21:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47479 * 2 1 4 4 O 1.42894 * 109.47228 * 120.00275 * 2 1 3 5 5 C 1.53002 * 109.47084 * 240.00114 * 2 1 3 6 6 C 1.50703 * 109.47261 * 175.00048 * 5 2 1 7 7 O 1.21278 * 119.99799 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00082 * 179.97438 * 6 5 2 9 9 C 1.46928 * 120.60249 * 179.97438 * 8 6 5 10 10 C 1.53261 * 108.73992 * 234.12339 * 9 8 6 11 11 C 1.52506 * 109.42409 * 306.20327 * 10 9 8 12 12 C 1.54205 * 109.96499 * 181.76745 * 11 10 9 13 13 C 1.54574 * 101.66346 * 143.24632 * 12 11 10 14 14 N 1.46817 * 105.48870 * 334.96213 * 13 12 11 15 15 C 1.46500 * 124.36211 * 196.90174 * 14 13 12 16 16 C 1.53006 * 109.46998 * 89.99797 * 15 14 13 17 17 C 1.50699 * 109.46866 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 C 1.34565 * 111.27675 * 17.16565 * 14 13 12 26 26 O 1.21284 * 125.02159 * 179.08718 * 25 14 13 27 27 C 1.52504 * 110.83248 * 59.97195 * 11 10 9 28 28 C 1.46934 * 120.60214 * 359.97438 * 8 6 5 29 29 H 1.09004 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46874 * 299.99719 * 1 2 3 31 31 H 1.09001 * 109.47361 * 59.99748 * 1 2 3 32 32 H 0.96706 * 114.00119 * 59.99953 * 4 2 1 33 33 H 1.08997 * 109.47008 * 54.99965 * 5 2 1 34 34 H 1.09000 * 109.46972 * 295.00276 * 5 2 1 35 35 H 1.09006 * 109.58961 * 114.34538 * 9 8 6 36 36 H 1.09001 * 109.59248 * 353.90447 * 9 8 6 37 37 H 1.08996 * 109.48490 * 186.22247 * 10 9 8 38 38 H 1.09000 * 109.48777 * 66.19292 * 10 9 8 39 39 H 1.08994 * 110.99011 * 25.15122 * 12 11 10 40 40 H 1.09006 * 110.98845 * 261.33498 * 12 11 10 41 41 H 1.09001 * 110.24224 * 215.96439 * 13 12 11 42 42 H 1.08997 * 110.32066 * 94.00455 * 13 12 11 43 43 H 1.09000 * 109.47175 * 329.99929 * 15 14 13 44 44 H 1.09001 * 109.47297 * 209.99436 * 15 14 13 45 45 H 1.08993 * 109.46955 * 300.00226 * 16 15 14 46 46 H 1.09000 * 109.47050 * 60.00054 * 16 15 14 47 47 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.48485 * 60.00324 * 27 11 10 49 49 H 1.09002 * 109.48254 * 180.02562 * 27 11 10 50 50 H 1.09006 * 109.59295 * 245.64313 * 28 8 6 51 51 H 1.09005 * 109.59303 * 6.09271 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5419 -0.6149 -1.3128 7 8 4.1450 -0.0212 -0.4441 8 7 4.2149 -1.1805 -2.3343 9 6 5.6791 -1.0845 -2.4097 10 6 6.0649 -0.5028 -3.7741 11 6 5.4185 -1.3311 -4.8796 12 6 5.8345 -0.7831 -6.2597 13 6 5.9697 -2.0835 -7.0844 14 7 6.2503 -3.1412 -6.1056 15 6 6.7970 -4.4575 -6.4443 16 6 8.3252 -4.4037 -6.3927 17 6 8.8875 -5.7575 -6.7418 18 1 8.2215 -6.5747 -6.9766 19 6 10.2522 -5.9534 -6.7605 20 7 11.0632 -4.9584 -6.4741 21 14 10.9492 -7.6313 -7.1939 22 1 9.8354 -8.5728 -7.4739 23 1 11.8123 -7.5132 -8.3966 24 1 11.7542 -8.1421 -6.0552 25 6 5.9354 -2.7478 -4.8578 26 8 6.0521 -3.4308 -3.8624 27 6 3.8991 -1.3168 -4.7501 28 6 3.4977 -1.9043 -3.3929 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7210 -1.5953 1.2328 33 1 1.6054 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2056 35 1 6.1167 -2.0767 -2.2983 36 1 6.0438 -0.4308 -1.6173 37 1 7.1487 -0.5287 -3.8871 38 1 5.7169 0.5279 -3.8415 39 1 6.7876 -0.2577 -6.2001 40 1 5.0596 -0.1375 -6.6731 41 1 6.7937 -1.9969 -7.7927 42 1 5.0399 -2.2953 -7.6123 43 1 6.4770 -4.7364 -7.4483 44 1 6.4351 -5.1962 -5.7292 45 1 8.6871 -3.6649 -7.1077 46 1 8.6452 -4.1248 -5.3888 47 1 12.0233 -5.0960 -6.4876 48 1 3.5375 -0.2911 -4.8232 49 1 3.4605 -1.9146 -5.5492 50 1 3.7645 -2.9607 -3.3588 51 1 2.4231 -1.7917 -3.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270416830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:03 Heat of formation + Delta-G solvation = -130.387866 kcal Electronic energy + Delta-G solvation = -30779.166369 eV Core-core repulsion = 26677.861547 eV Total energy + Delta-G solvation = -4101.304822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24777 -39.81283 -37.66779 -36.62001 -36.13447 -34.19916 -32.91668 -32.30616 -31.28330 -30.54066 -28.76849 -28.17756 -25.96837 -24.92461 -23.63582 -22.79649 -21.91756 -21.77102 -20.56355 -19.49533 -18.26256 -17.31676 -16.78420 -16.65828 -16.44330 -15.90896 -15.60237 -15.48003 -15.02210 -14.88034 -14.49890 -14.21510 -14.10895 -13.97785 -13.71322 -13.41239 -13.29892 -12.90158 -12.71158 -12.64422 -12.47723 -12.43742 -12.28151 -12.20160 -12.03364 -11.87836 -11.61231 -11.36360 -11.28755 -11.10449 -10.98761 -10.73535 -10.67040 -10.53103 -10.35686 -10.03289 -9.91181 -9.73381 -9.36520 -9.13326 -8.48449 -8.41151 -8.07194 -6.06030 -4.09731 2.61891 2.92146 2.95122 3.28051 3.35345 3.38721 3.50280 4.08476 4.24381 4.29576 4.38534 4.41533 4.42555 4.51495 4.79667 4.82058 4.89886 4.92352 4.99787 5.03660 5.14579 5.19186 5.26663 5.29914 5.30305 5.39926 5.46132 5.49972 5.62563 5.66897 5.68830 5.78067 5.81037 5.86155 5.87108 5.93184 6.00708 6.05554 6.26623 6.40946 6.51266 6.75763 6.94393 7.39779 7.46015 7.46463 7.62826 7.80224 7.93358 8.18597 8.29343 8.62201 8.97168 9.54705 11.05349 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.002386 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.047337 B =11733.632936 C =12211.450732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.118 3.882 3 H 0.103 0.897 4 O -0.548 6.548 5 C -0.175 4.175 6 C 0.512 3.488 7 O -0.531 6.531 8 N -0.605 5.605 9 C 0.102 3.898 10 C -0.109 4.109 11 C -0.094 4.094 12 C -0.125 4.125 13 C 0.101 3.899 14 N -0.610 5.610 15 C 0.128 3.872 16 C 0.012 3.988 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.522 3.478 26 O -0.525 6.525 27 C -0.110 4.110 28 C 0.104 3.896 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.368 0.632 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.412 12.213 3.151 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.059 3.941 3 H 0.121 0.879 4 O -0.352 6.352 5 C -0.216 4.216 6 C 0.300 3.700 7 O -0.407 6.407 8 N -0.338 5.338 9 C -0.020 4.020 10 C -0.147 4.147 11 C -0.098 4.098 12 C -0.163 4.163 13 C -0.023 4.023 14 N -0.342 5.342 15 C 0.008 3.992 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.308 3.692 26 O -0.401 6.401 27 C -0.149 4.149 28 C -0.019 4.019 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.214 0.786 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.526 12.699 4.235 25.349 hybrid contribution 0.304 -1.504 -0.856 1.757 sum -21.223 11.195 3.379 24.231 Atomic orbital electron populations 1.22538 0.96185 1.02623 1.02992 1.21643 0.91973 0.97216 0.83302 0.87874 1.86736 1.77040 1.28358 1.43076 1.22534 0.93819 1.03595 1.01616 1.20447 0.89668 0.78679 0.81219 1.90727 1.69953 1.42272 1.37718 1.48034 1.07673 1.54110 1.24028 1.21847 0.79236 1.03845 0.97073 1.21707 1.01092 0.98514 0.93412 1.21030 0.96623 0.95189 0.96933 1.22709 1.03000 0.97046 0.93529 1.22044 1.01327 0.86553 0.92367 1.48596 1.62482 1.15951 1.07180 1.21805 0.97586 0.80171 0.99671 1.19398 0.87922 0.97411 0.97818 1.21112 0.91684 0.96049 1.47260 0.92451 1.25010 0.97200 0.96914 0.95202 1.69981 1.03223 1.31125 1.48753 0.86496 0.79091 0.84133 0.78037 1.19669 1.20982 1.20923 1.20373 0.77401 0.88050 0.83351 1.90651 1.54941 1.60016 1.34526 1.21727 0.93323 1.02327 0.97518 1.21793 0.96253 0.97393 0.86491 0.92232 0.91453 0.91508 0.78553 0.88220 0.88715 0.88599 0.89325 0.90126 0.90979 0.89697 0.89486 0.90100 0.91644 0.91689 0.91128 0.96520 0.96118 0.92951 0.90475 0.90253 0.90150 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.02 9.53 37.16 0.35 -0.67 16 2 C 0.12 1.00 3.13 -26.73 -0.08 0.92 16 3 H 0.10 1.04 7.95 -51.93 -0.41 0.62 16 4 O -0.55 -5.92 12.57 -49.66 -0.62 -6.54 16 5 C -0.18 -1.37 3.73 -27.88 -0.10 -1.47 16 6 C 0.51 6.41 7.58 -10.99 -0.08 6.33 16 7 O -0.53 -8.85 14.83 -8.87 -0.13 -8.98 16 8 N -0.60 -7.41 2.96 -172.68 -0.51 -7.92 16 9 C 0.10 1.44 6.00 -3.67 -0.02 1.42 16 10 C -0.11 -1.33 4.80 -26.85 -0.13 -1.46 16 11 C -0.09 -1.12 0.55 -155.48 -0.09 -1.20 16 12 C -0.13 -1.25 6.20 -25.27 -0.16 -1.40 16 13 C 0.10 1.23 7.35 -3.04 -0.02 1.21 16 14 N -0.61 -10.25 2.94 -172.46 -0.51 -10.76 16 15 C 0.13 2.59 5.88 -4.04 -0.02 2.56 16 16 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 17 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 21 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 C 0.52 8.74 6.24 -11.02 -0.07 8.67 16 26 O -0.52 -10.67 13.72 5.55 0.08 -10.60 16 27 C -0.11 -1.00 4.77 -26.86 -0.13 -1.13 16 28 C 0.10 1.03 5.93 -3.68 -0.02 1.01 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.37 2.54 9.05 45.56 0.41 2.95 16 33 H 0.10 0.54 7.70 -51.93 -0.40 0.14 16 34 H 0.09 0.59 7.93 -51.93 -0.41 0.18 16 35 H 0.10 1.64 5.87 -51.93 -0.30 1.33 16 36 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 37 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 40 H 0.09 0.61 7.87 -51.93 -0.41 0.21 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.51 7.92 -51.93 -0.41 1.10 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 1.00 6.82 -51.93 -0.35 0.64 16 51 H 0.08 0.55 5.92 -51.93 -0.31 0.24 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -36.48 398.38 -9.10 -45.58 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.99 Total: 1.13 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.13 Total: 1.62 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.28 Total: -44.74 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.68 Total: -26.12 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.48 -9.10 -45.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270416830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.808 kcal (2) G-P(sol) polarization free energy of solvation -36.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds