Wall clock time and date at job start Tue Mar 31 2020 21:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47479 * 2 1 4 4 O 1.42894 * 109.47228 * 120.00275 * 2 1 3 5 5 C 1.53002 * 109.47084 * 240.00114 * 2 1 3 6 6 C 1.50703 * 109.47261 * 175.00048 * 5 2 1 7 7 O 1.21278 * 119.99799 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00082 * 179.97438 * 6 5 2 9 9 C 1.46928 * 120.60249 * 179.97438 * 8 6 5 10 10 C 1.53261 * 108.73992 * 234.12339 * 9 8 6 11 11 C 1.52506 * 109.42409 * 306.20327 * 10 9 8 12 12 C 1.54205 * 109.96499 * 181.76745 * 11 10 9 13 13 C 1.54574 * 101.66346 * 143.24632 * 12 11 10 14 14 N 1.46817 * 105.48870 * 334.96213 * 13 12 11 15 15 C 1.46500 * 124.36211 * 196.90174 * 14 13 12 16 16 C 1.53006 * 109.46998 * 89.99797 * 15 14 13 17 17 C 1.50699 * 109.46866 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 C 1.34565 * 111.27675 * 17.16565 * 14 13 12 26 26 O 1.21284 * 125.02159 * 179.08718 * 25 14 13 27 27 C 1.52504 * 110.83248 * 59.97195 * 11 10 9 28 28 C 1.46934 * 120.60214 * 359.97438 * 8 6 5 29 29 H 1.09004 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46874 * 299.99719 * 1 2 3 31 31 H 1.09001 * 109.47361 * 59.99748 * 1 2 3 32 32 H 0.96706 * 114.00119 * 59.99953 * 4 2 1 33 33 H 1.08997 * 109.47008 * 54.99965 * 5 2 1 34 34 H 1.09000 * 109.46972 * 295.00276 * 5 2 1 35 35 H 1.09006 * 109.58961 * 114.34538 * 9 8 6 36 36 H 1.09001 * 109.59248 * 353.90447 * 9 8 6 37 37 H 1.08996 * 109.48490 * 186.22247 * 10 9 8 38 38 H 1.09000 * 109.48777 * 66.19292 * 10 9 8 39 39 H 1.08994 * 110.99011 * 25.15122 * 12 11 10 40 40 H 1.09006 * 110.98845 * 261.33498 * 12 11 10 41 41 H 1.09001 * 110.24224 * 215.96439 * 13 12 11 42 42 H 1.08997 * 110.32066 * 94.00455 * 13 12 11 43 43 H 1.09000 * 109.47175 * 329.99929 * 15 14 13 44 44 H 1.09001 * 109.47297 * 209.99436 * 15 14 13 45 45 H 1.08993 * 109.46955 * 300.00226 * 16 15 14 46 46 H 1.09000 * 109.47050 * 60.00054 * 16 15 14 47 47 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.48485 * 60.00324 * 27 11 10 49 49 H 1.09002 * 109.48254 * 180.02562 * 27 11 10 50 50 H 1.09006 * 109.59295 * 245.64313 * 28 8 6 51 51 H 1.09005 * 109.59303 * 6.09271 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5419 -0.6149 -1.3128 7 8 4.1450 -0.0212 -0.4441 8 7 4.2149 -1.1805 -2.3343 9 6 5.6791 -1.0845 -2.4097 10 6 6.0649 -0.5028 -3.7741 11 6 5.4185 -1.3311 -4.8796 12 6 5.8345 -0.7831 -6.2597 13 6 5.9697 -2.0835 -7.0844 14 7 6.2503 -3.1412 -6.1056 15 6 6.7970 -4.4575 -6.4443 16 6 8.3252 -4.4037 -6.3927 17 6 8.8875 -5.7575 -6.7418 18 1 8.2215 -6.5747 -6.9766 19 6 10.2522 -5.9534 -6.7605 20 7 11.0632 -4.9584 -6.4741 21 14 10.9492 -7.6313 -7.1939 22 1 9.8354 -8.5728 -7.4739 23 1 11.8123 -7.5132 -8.3966 24 1 11.7542 -8.1421 -6.0552 25 6 5.9354 -2.7478 -4.8578 26 8 6.0521 -3.4308 -3.8624 27 6 3.8991 -1.3168 -4.7501 28 6 3.4977 -1.9043 -3.3929 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7210 -1.5953 1.2328 33 1 1.6054 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2056 35 1 6.1167 -2.0767 -2.2983 36 1 6.0438 -0.4308 -1.6173 37 1 7.1487 -0.5287 -3.8871 38 1 5.7169 0.5279 -3.8415 39 1 6.7876 -0.2577 -6.2001 40 1 5.0596 -0.1375 -6.6731 41 1 6.7937 -1.9969 -7.7927 42 1 5.0399 -2.2953 -7.6123 43 1 6.4770 -4.7364 -7.4483 44 1 6.4351 -5.1962 -5.7292 45 1 8.6871 -3.6649 -7.1077 46 1 8.6452 -4.1248 -5.3888 47 1 12.0233 -5.0960 -6.4876 48 1 3.5375 -0.2911 -4.8232 49 1 3.4605 -1.9146 -5.5492 50 1 3.7645 -2.9607 -3.3588 51 1 2.4231 -1.7917 -3.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270416830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:02 Heat of formation + Delta-G solvation = -156.884823 kcal Electronic energy + Delta-G solvation = -30780.315364 eV Core-core repulsion = 26677.861547 eV Total energy + Delta-G solvation = -4102.453817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32651 -40.81535 -38.50384 -37.66640 -37.46896 -35.80994 -34.52439 -33.18890 -32.19367 -31.95011 -30.00766 -28.93739 -27.23453 -26.51625 -24.49899 -23.94380 -23.29409 -22.57843 -21.84605 -20.54761 -19.43547 -18.69723 -18.21305 -17.57202 -17.24484 -17.21217 -16.85408 -16.47485 -16.42425 -16.06741 -15.84202 -15.27634 -15.00389 -14.83055 -14.65646 -14.58480 -14.46755 -14.24690 -14.20085 -13.94783 -13.44559 -13.36348 -13.28090 -13.19909 -12.99478 -12.89235 -12.81072 -12.61753 -12.57000 -12.38158 -12.23379 -11.95102 -11.87479 -11.73472 -11.54589 -11.47711 -11.40356 -11.03446 -10.72241 -10.63847 -10.47697 -9.54048 -9.50583 -8.26134 -6.38940 1.36899 1.38614 1.51451 1.65486 1.69035 2.02031 2.20325 2.40309 3.07546 3.26226 3.39942 3.50974 3.62304 3.67644 3.80790 3.97456 4.01040 4.06740 4.23506 4.30176 4.32964 4.36754 4.39653 4.52343 4.55713 4.62695 4.62926 4.63750 4.67623 4.75102 4.77229 4.84021 4.88959 4.92860 4.99544 5.02675 5.06083 5.19927 5.21114 5.23352 5.33690 5.34225 5.45595 5.53518 5.60697 5.83051 6.13752 6.36873 6.49898 6.77431 6.92830 7.24227 7.29333 7.32200 8.86093 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.002386 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.047337 B =11733.632936 C =12211.450732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 H 0.079 0.921 4 O -0.581 6.581 5 C -0.164 4.164 6 C 0.504 3.496 7 O -0.583 6.583 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.103 4.103 11 C -0.085 4.085 12 C -0.113 4.113 13 C 0.093 3.907 14 N -0.620 5.620 15 C 0.144 3.856 16 C 0.024 3.976 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.970 3.030 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.283 1.283 25 C 0.507 3.493 26 O -0.573 6.573 27 C -0.105 4.105 28 C 0.099 3.901 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.382 0.618 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.052 0.948 45 H -0.001 1.001 46 H -0.030 1.030 47 H 0.264 0.736 48 H 0.113 0.887 49 H 0.100 0.900 50 H 0.048 0.952 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.036 12.670 0.565 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 H 0.097 0.903 4 O -0.388 6.388 5 C -0.203 4.203 6 C 0.294 3.706 7 O -0.463 6.463 8 N -0.336 5.336 9 C -0.019 4.019 10 C -0.141 4.141 11 C -0.089 4.089 12 C -0.150 4.150 13 C -0.029 4.029 14 N -0.352 5.352 15 C 0.022 3.978 16 C -0.014 4.014 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.794 3.206 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.209 1.209 25 C 0.296 3.704 26 O -0.453 6.453 27 C -0.143 4.143 28 C -0.023 4.023 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.154 0.846 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.017 0.983 46 H -0.012 1.012 47 H 0.073 0.927 48 H 0.132 0.868 49 H 0.119 0.881 50 H 0.067 0.933 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -25.195 13.162 1.597 28.471 hybrid contribution 1.499 -1.656 0.018 2.234 sum -23.696 11.507 1.615 26.391 Atomic orbital electron populations 1.22430 0.93366 1.03830 1.03590 1.21717 0.93989 0.95931 0.82932 0.90299 1.86689 1.77944 1.29693 1.44494 1.22575 0.89658 1.05297 1.02791 1.21393 0.91700 0.77431 0.80036 1.90705 1.71442 1.44643 1.39523 1.48132 1.06612 1.54032 1.24847 1.21546 0.81222 1.01229 0.97929 1.21660 1.00092 0.99941 0.92417 1.21056 0.98876 0.91114 0.97846 1.22789 1.04367 0.96361 0.91492 1.22409 1.02706 0.86090 0.91667 1.48705 1.62019 1.15736 1.08713 1.21304 0.93704 0.82304 1.00506 1.19208 0.91983 0.96165 0.94054 1.21586 0.92359 0.97141 1.46984 0.91458 1.26042 0.97730 1.01292 0.94933 1.70124 1.03639 1.33700 1.49882 0.85325 0.78534 0.78906 0.77832 1.18084 1.19877 1.20922 1.21396 0.76614 0.89951 0.82470 1.90628 1.56718 1.61853 1.36138 1.21834 0.90411 1.04821 0.97261 1.22005 0.98372 0.95420 0.86456 0.90668 0.92246 0.89544 0.76959 0.84432 0.86425 0.92595 0.91181 0.92205 0.88138 0.90454 0.84572 0.91015 0.87867 0.89172 0.92937 0.98280 1.01163 0.92747 0.86843 0.88119 0.93311 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.53 71.98 0.69 -0.71 16 2 C 0.11 1.76 3.13 30.59 0.10 1.85 16 3 H 0.08 1.58 7.95 -2.39 -0.02 1.56 16 4 O -0.58 -12.53 12.57 -135.18 -1.70 -14.23 16 5 C -0.16 -2.06 3.73 29.85 0.11 -1.94 16 6 C 0.50 12.28 7.58 87.66 0.66 12.94 16 7 O -0.58 -20.24 14.83 10.77 0.16 -20.08 16 8 N -0.60 -14.42 2.96 -818.63 -2.43 -16.85 16 9 C 0.10 3.15 6.00 86.39 0.52 3.67 16 10 C -0.10 -2.51 4.80 30.52 0.15 -2.37 16 11 C -0.09 -1.87 0.55 -52.81 -0.03 -1.90 16 12 C -0.11 -1.86 6.20 31.54 0.20 -1.66 16 13 C 0.09 2.03 7.35 86.85 0.64 2.67 16 14 N -0.62 -20.84 2.94 -818.05 -2.40 -23.24 16 15 C 0.14 5.96 5.88 86.38 0.51 6.47 16 16 C 0.02 1.29 5.30 29.85 0.16 1.45 16 17 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 21 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 C 0.51 17.35 6.24 87.73 0.55 17.90 16 26 O -0.57 -25.07 13.72 -3.04 -0.04 -25.11 16 27 C -0.11 -1.44 4.77 30.51 0.15 -1.29 16 28 C 0.10 1.71 5.93 86.38 0.51 2.22 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.38 5.08 9.05 -74.05 -0.67 4.41 16 33 H 0.14 0.72 7.70 -2.39 -0.02 0.71 16 34 H 0.12 1.00 7.93 -2.39 -0.02 0.98 16 35 H 0.06 2.14 5.87 -2.38 -0.01 2.12 16 36 H 0.07 2.32 7.00 -2.39 -0.02 2.30 16 37 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.42 7.88 -2.39 -0.02 1.40 16 40 H 0.14 1.01 7.87 -2.38 -0.02 0.99 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.05 2.34 7.92 -2.39 -0.02 2.32 16 45 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 46 H -0.03 -1.90 8.14 -2.39 -0.02 -1.92 16 47 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 49 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.05 1.18 6.82 -2.38 -0.02 1.17 16 51 H 0.13 1.04 5.92 -2.38 -0.01 1.02 16 Total: -1.00 -89.23 398.38 1.75 -87.49 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.25 Total: 14.31 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.59 Total: 8.79 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -4.54 Total: -97.84 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -1.58 Total: -59.41 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -89.23 1.75 -87.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270416830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.399 kcal (2) G-P(sol) polarization free energy of solvation -89.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds