Wall clock time and date at job start Tue Mar 31 2020 21:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42895 * 109.47503 * 240.00043 * 2 1 3 5 5 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 6 6 C 1.50695 * 109.47581 * 185.00152 * 5 2 1 7 7 O 1.21282 * 119.99896 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00151 * 180.02562 * 6 5 2 9 9 C 1.46928 * 120.60886 * 359.72148 * 8 6 5 10 10 C 1.53703 * 108.50202 * 125.81512 * 9 8 6 11 11 C 1.52505 * 109.35879 * 54.02880 * 10 9 8 12 12 C 1.54199 * 109.96478 * 178.11550 * 11 10 9 13 13 C 1.54575 * 101.66307 * 216.76050 * 12 11 10 14 14 N 1.46812 * 105.49053 * 25.03761 * 13 12 11 15 15 C 1.46496 * 124.36400 * 163.06997 * 14 13 12 16 16 C 1.52995 * 109.47475 * 89.99268 * 15 14 13 17 17 C 1.50704 * 109.47172 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99609 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00454 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47056 * 89.99583 * 21 19 17 23 23 H 1.48493 * 109.47591 * 210.00240 * 21 19 17 24 24 H 1.48505 * 109.46944 * 330.00253 * 21 19 17 25 25 C 1.34563 * 111.27674 * 343.06195 * 14 13 12 26 26 O 1.21278 * 125.01799 * 180.70394 * 25 14 13 27 27 C 1.52503 * 110.82990 * 299.91112 * 11 10 9 28 28 C 1.46935 * 120.60830 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.96709 * 113.99981 * 300.00021 * 4 2 1 33 33 H 1.08998 * 109.47565 * 305.00629 * 5 2 1 34 34 H 1.09000 * 109.46738 * 65.00110 * 5 2 1 35 35 H 1.08995 * 109.59680 * 245.63998 * 9 8 6 36 36 H 1.09003 * 109.59138 * 6.08808 * 9 8 6 37 37 H 1.09000 * 109.61914 * 294.00038 * 10 9 8 38 38 H 1.09005 * 109.41436 * 173.92902 * 10 9 8 39 39 H 1.09011 * 110.98845 * 334.85029 * 12 11 10 40 40 H 1.09000 * 110.99119 * 98.65878 * 12 11 10 41 41 H 1.09005 * 110.24119 * 144.03955 * 13 12 11 42 42 H 1.09005 * 110.23889 * 265.94245 * 13 12 11 43 43 H 1.08994 * 109.47345 * 209.99952 * 15 14 13 44 44 H 1.09010 * 109.46739 * 329.99648 * 15 14 13 45 45 H 1.09004 * 109.47608 * 300.00107 * 16 15 14 46 46 H 1.09001 * 109.47387 * 60.00350 * 16 15 14 47 47 H 0.96996 * 119.99951 * 180.02562 * 20 19 17 48 48 H 1.08991 * 109.48099 * 299.98102 * 27 11 10 49 49 H 1.09008 * 109.48144 * 179.97438 * 27 11 10 50 50 H 1.09009 * 109.59340 * 353.91712 * 28 8 6 51 51 H 1.08994 * 109.59539 * 114.36485 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6148 1.3128 7 8 4.1450 -0.0203 0.4446 8 7 4.2149 -1.1804 2.3344 9 6 3.4973 -1.8985 3.3966 10 6 4.0926 -3.3103 3.5189 11 6 5.6007 -3.2072 3.7207 12 6 6.2063 -4.6149 3.8925 13 6 7.3084 -4.3547 4.9447 14 7 6.8711 -3.1642 5.6843 15 6 7.4055 -2.7569 6.9861 16 6 8.6061 -1.8317 6.7778 17 6 9.1561 -1.4132 8.1170 18 1 8.6957 -1.7717 9.0258 19 6 10.2471 -0.5727 8.1819 20 7 10.8075 -0.1358 7.0753 21 14 10.9286 -0.0534 9.8419 22 1 11.9636 -1.0249 10.2779 23 1 11.5343 1.2975 9.7278 24 1 9.8292 -0.0202 10.8398 25 6 5.9164 -2.4952 5.0122 26 8 5.3882 -1.4706 5.3891 27 6 6.2584 -2.4978 2.5418 28 6 5.6792 -1.0854 2.4093 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7211 -1.5953 -1.2329 33 1 1.6054 -0.2617 2.1370 34 1 1.7517 -1.7714 1.2056 35 1 3.6139 -1.3665 4.3407 36 1 2.4398 -1.9671 3.1414 37 1 3.8853 -3.8749 2.6100 38 1 3.6456 -3.8192 4.3730 39 1 5.4627 -5.3163 4.2713 40 1 6.6364 -4.9718 2.9567 41 1 7.3948 -5.2068 5.6190 42 1 8.2624 -4.1654 4.4527 43 1 6.6337 -2.2299 7.5469 44 1 7.7197 -3.6402 7.5423 45 1 9.3780 -2.3587 6.2170 46 1 8.2920 -0.9484 6.2216 47 1 11.5753 0.4552 7.1211 48 1 6.0645 -3.0572 1.6268 49 1 7.3338 -2.4358 2.7087 50 1 6.0620 -0.6171 1.5024 51 1 5.9630 -0.4911 3.2778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270416831.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:06 Heat of formation + Delta-G solvation = -130.327073 kcal Electronic energy + Delta-G solvation = -30880.784407 eV Core-core repulsion = 26779.482221 eV Total energy + Delta-G solvation = -4101.302186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22818 -39.78620 -37.64763 -36.58690 -36.14430 -34.18200 -32.86461 -32.31728 -31.23607 -30.56844 -28.68522 -28.15548 -25.96922 -24.93481 -23.60224 -22.72503 -21.90018 -21.85083 -20.52533 -19.47223 -18.25542 -17.28568 -16.74417 -16.61545 -16.37994 -15.96581 -15.55703 -15.45864 -15.01655 -14.83753 -14.49258 -14.24196 -14.10750 -14.04618 -13.48312 -13.40291 -13.24870 -12.99063 -12.71411 -12.65444 -12.40593 -12.35293 -12.29443 -12.21236 -11.95942 -11.92277 -11.60309 -11.32785 -11.26287 -11.07688 -10.96617 -10.73468 -10.66836 -10.57164 -10.34195 -10.02843 -9.88980 -9.69823 -9.36829 -9.12505 -8.45607 -8.40030 -8.06935 -6.04997 -4.08831 2.65987 2.93869 2.98734 3.29168 3.35522 3.38472 3.49507 4.11035 4.25735 4.34100 4.36691 4.43059 4.43887 4.57399 4.78287 4.85228 4.92121 4.99717 5.04343 5.07272 5.15187 5.21621 5.30383 5.31225 5.33438 5.41461 5.50050 5.55361 5.65276 5.66473 5.71224 5.77053 5.82917 5.85443 5.91626 5.98930 6.02293 6.03688 6.20212 6.40763 6.53280 6.76182 6.94760 7.43585 7.46338 7.47687 7.63016 7.80685 7.94068 8.22439 8.30149 8.61963 8.97828 9.55523 11.06339 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.002533 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.896578 B =11049.926392 C =11747.123644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.118 3.882 3 H 0.104 0.896 4 O -0.548 6.548 5 C -0.174 4.174 6 C 0.512 3.488 7 O -0.532 6.532 8 N -0.605 5.605 9 C 0.096 3.904 10 C -0.108 4.108 11 C -0.094 4.094 12 C -0.125 4.125 13 C 0.101 3.899 14 N -0.609 5.609 15 C 0.128 3.872 16 C 0.012 3.988 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.523 3.477 26 O -0.526 6.526 27 C -0.110 4.110 28 C 0.109 3.891 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.366 0.634 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.016 0.984 46 H 0.021 0.979 47 H 0.262 0.738 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.299 -10.540 -12.246 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.058 3.942 3 H 0.122 0.878 4 O -0.352 6.352 5 C -0.215 4.215 6 C 0.300 3.700 7 O -0.408 6.408 8 N -0.338 5.338 9 C -0.027 4.027 10 C -0.147 4.147 11 C -0.098 4.098 12 C -0.163 4.163 13 C -0.023 4.023 14 N -0.342 5.342 15 C 0.008 3.992 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.309 3.691 26 O -0.403 6.403 27 C -0.148 4.148 28 C -0.014 4.014 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.212 0.788 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.787 -8.955 -12.586 24.322 hybrid contribution 0.365 -0.427 1.296 1.413 sum -18.422 -9.382 -11.289 23.555 Atomic orbital electron populations 1.22534 0.96165 1.02539 1.03073 1.21658 0.91999 0.97317 0.83211 0.87775 1.86744 1.77025 1.28190 1.43200 1.22519 0.93813 1.03389 1.01741 1.20452 0.89710 0.78862 0.80980 1.90728 1.69937 1.42072 1.38045 1.48034 1.07412 1.54530 1.23869 1.22103 0.95178 0.92545 0.92847 1.21775 0.93153 0.97290 1.02459 1.21038 0.96965 0.96357 0.95398 1.22717 0.98204 0.95439 0.99916 1.22054 0.97697 0.88450 0.94092 1.48581 1.38331 1.25943 1.21299 1.21813 0.98005 0.98974 0.80408 1.19396 0.91297 0.94308 0.97543 1.21071 1.13650 1.29242 0.92250 0.92515 1.25002 0.96747 0.95940 0.96570 1.69966 1.22542 1.33763 1.26784 0.86556 0.79169 0.77966 0.84092 1.20623 1.21150 1.19796 1.20357 0.79491 0.84161 0.85115 1.90636 1.54430 1.23125 1.72075 1.21718 1.00585 0.96116 0.96402 1.21636 0.79063 0.96746 1.03912 0.92299 0.91465 0.91420 0.78779 0.88091 0.88796 0.88266 0.90340 0.90889 0.90505 0.90083 0.89350 0.90595 0.91036 0.91141 0.91687 0.96533 0.96095 0.92882 0.90606 0.89939 0.88902 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 9.53 37.16 0.35 -0.74 16 2 C 0.12 1.05 3.13 -26.73 -0.08 0.97 16 3 H 0.10 1.14 7.95 -51.93 -0.41 0.73 16 4 O -0.55 -5.79 12.57 -49.64 -0.62 -6.42 16 5 C -0.17 -1.45 3.73 -27.89 -0.10 -1.56 16 6 C 0.51 6.68 7.58 -10.99 -0.08 6.60 16 7 O -0.53 -9.12 14.83 -8.85 -0.13 -9.25 16 8 N -0.60 -7.73 2.96 -172.42 -0.51 -8.24 16 9 C 0.10 1.03 5.94 -3.44 -0.02 1.01 16 10 C -0.11 -1.04 4.81 -26.62 -0.13 -1.17 16 11 C -0.09 -1.12 0.55 -155.48 -0.08 -1.20 16 12 C -0.12 -1.17 6.20 -25.28 -0.16 -1.33 16 13 C 0.10 1.25 7.35 -3.04 -0.02 1.23 16 14 N -0.61 -10.33 2.94 -172.47 -0.51 -10.84 16 15 C 0.13 2.61 5.87 -4.05 -0.02 2.58 16 16 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 21 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 C 0.52 8.75 6.24 -11.02 -0.07 8.68 16 26 O -0.53 -10.58 13.73 5.56 0.08 -10.51 16 27 C -0.11 -1.35 4.77 -26.87 -0.13 -1.47 16 28 C 0.11 1.58 6.02 -3.69 -0.02 1.56 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.37 2.31 9.05 45.56 0.41 2.72 16 33 H 0.10 0.70 7.92 -51.93 -0.41 0.29 16 34 H 0.09 0.55 7.71 -51.93 -0.40 0.15 16 35 H 0.10 1.35 5.85 -51.93 -0.30 1.05 16 36 H 0.08 0.59 5.92 -51.93 -0.31 0.28 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.68 8.13 -51.93 -0.42 0.25 16 39 H 0.08 0.63 7.88 -51.92 -0.41 0.22 16 40 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.51 7.94 -51.93 -0.41 1.10 16 44 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 50 H 0.09 1.43 7.00 -51.92 -0.36 1.06 16 51 H 0.08 1.39 6.84 -51.93 -0.36 1.03 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -36.36 398.45 -9.09 -45.45 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.99 Total: 1.44 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.13 Total: 1.94 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.28 Total: -45.25 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.68 Total: -26.18 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.36 -9.09 -45.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270416831.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.873 kcal (2) G-P(sol) polarization free energy of solvation -36.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds