Wall clock time and date at job start Tue Mar 31 2020 21:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42895 * 109.47503 * 240.00043 * 2 1 3 5 5 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 6 6 C 1.50695 * 109.47581 * 185.00152 * 5 2 1 7 7 O 1.21282 * 119.99896 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00151 * 180.02562 * 6 5 2 9 9 C 1.46928 * 120.60886 * 359.72148 * 8 6 5 10 10 C 1.53703 * 108.50202 * 125.81512 * 9 8 6 11 11 C 1.52505 * 109.35879 * 54.02880 * 10 9 8 12 12 C 1.54199 * 109.96478 * 178.11550 * 11 10 9 13 13 C 1.54575 * 101.66307 * 216.76050 * 12 11 10 14 14 N 1.46812 * 105.49053 * 25.03761 * 13 12 11 15 15 C 1.46496 * 124.36400 * 163.06997 * 14 13 12 16 16 C 1.52995 * 109.47475 * 89.99268 * 15 14 13 17 17 C 1.50704 * 109.47172 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99609 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00454 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47056 * 89.99583 * 21 19 17 23 23 H 1.48493 * 109.47591 * 210.00240 * 21 19 17 24 24 H 1.48505 * 109.46944 * 330.00253 * 21 19 17 25 25 C 1.34563 * 111.27674 * 343.06195 * 14 13 12 26 26 O 1.21278 * 125.01799 * 180.70394 * 25 14 13 27 27 C 1.52503 * 110.82990 * 299.91112 * 11 10 9 28 28 C 1.46935 * 120.60830 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.96709 * 113.99981 * 300.00021 * 4 2 1 33 33 H 1.08998 * 109.47565 * 305.00629 * 5 2 1 34 34 H 1.09000 * 109.46738 * 65.00110 * 5 2 1 35 35 H 1.08995 * 109.59680 * 245.63998 * 9 8 6 36 36 H 1.09003 * 109.59138 * 6.08808 * 9 8 6 37 37 H 1.09000 * 109.61914 * 294.00038 * 10 9 8 38 38 H 1.09005 * 109.41436 * 173.92902 * 10 9 8 39 39 H 1.09011 * 110.98845 * 334.85029 * 12 11 10 40 40 H 1.09000 * 110.99119 * 98.65878 * 12 11 10 41 41 H 1.09005 * 110.24119 * 144.03955 * 13 12 11 42 42 H 1.09005 * 110.23889 * 265.94245 * 13 12 11 43 43 H 1.08994 * 109.47345 * 209.99952 * 15 14 13 44 44 H 1.09010 * 109.46739 * 329.99648 * 15 14 13 45 45 H 1.09004 * 109.47608 * 300.00107 * 16 15 14 46 46 H 1.09001 * 109.47387 * 60.00350 * 16 15 14 47 47 H 0.96996 * 119.99951 * 180.02562 * 20 19 17 48 48 H 1.08991 * 109.48099 * 299.98102 * 27 11 10 49 49 H 1.09008 * 109.48144 * 179.97438 * 27 11 10 50 50 H 1.09009 * 109.59340 * 353.91712 * 28 8 6 51 51 H 1.08994 * 109.59539 * 114.36485 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6148 1.3128 7 8 4.1450 -0.0203 0.4446 8 7 4.2149 -1.1804 2.3344 9 6 3.4973 -1.8985 3.3966 10 6 4.0926 -3.3103 3.5189 11 6 5.6007 -3.2072 3.7207 12 6 6.2063 -4.6149 3.8925 13 6 7.3084 -4.3547 4.9447 14 7 6.8711 -3.1642 5.6843 15 6 7.4055 -2.7569 6.9861 16 6 8.6061 -1.8317 6.7778 17 6 9.1561 -1.4132 8.1170 18 1 8.6957 -1.7717 9.0258 19 6 10.2471 -0.5727 8.1819 20 7 10.8075 -0.1358 7.0753 21 14 10.9286 -0.0534 9.8419 22 1 11.9636 -1.0249 10.2779 23 1 11.5343 1.2975 9.7278 24 1 9.8292 -0.0202 10.8398 25 6 5.9164 -2.4952 5.0122 26 8 5.3882 -1.4706 5.3891 27 6 6.2584 -2.4978 2.5418 28 6 5.6792 -1.0854 2.4093 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7211 -1.5953 -1.2329 33 1 1.6054 -0.2617 2.1370 34 1 1.7517 -1.7714 1.2056 35 1 3.6139 -1.3665 4.3407 36 1 2.4398 -1.9671 3.1414 37 1 3.8853 -3.8749 2.6100 38 1 3.6456 -3.8192 4.3730 39 1 5.4627 -5.3163 4.2713 40 1 6.6364 -4.9718 2.9567 41 1 7.3948 -5.2068 5.6190 42 1 8.2624 -4.1654 4.4527 43 1 6.6337 -2.2299 7.5469 44 1 7.7197 -3.6402 7.5423 45 1 9.3780 -2.3587 6.2170 46 1 8.2920 -0.9484 6.2216 47 1 11.5753 0.4552 7.1211 48 1 6.0645 -3.0572 1.6268 49 1 7.3338 -2.4358 2.7087 50 1 6.0620 -0.6171 1.5024 51 1 5.9630 -0.4911 3.2778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270416831.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:05 Heat of formation + Delta-G solvation = -156.719799 kcal Electronic energy + Delta-G solvation = -30881.928881 eV Core-core repulsion = 26779.482221 eV Total energy + Delta-G solvation = -4102.446661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32467 -40.82640 -38.50160 -37.65978 -37.47495 -35.82562 -34.50879 -33.18523 -32.11083 -32.08565 -29.96124 -28.91983 -27.24527 -26.54443 -24.53654 -23.94194 -23.28612 -22.63725 -21.81470 -20.55341 -19.43804 -18.70311 -18.22285 -17.55921 -17.19178 -17.17079 -16.98250 -16.55494 -16.39662 -15.99130 -15.85775 -15.29103 -15.16979 -14.79107 -14.58047 -14.52356 -14.43896 -14.30530 -14.24953 -13.91137 -13.45046 -13.36471 -13.26051 -13.22845 -12.97297 -12.86986 -12.79874 -12.67580 -12.61505 -12.36565 -12.27045 -11.96513 -11.84659 -11.74400 -11.54523 -11.50865 -11.42285 -11.02780 -10.73906 -10.63386 -10.47073 -9.55676 -9.51128 -8.26517 -6.39691 1.36403 1.39125 1.49943 1.65905 1.67334 2.00862 2.18108 2.39790 3.07094 3.25903 3.41676 3.47724 3.60819 3.74420 3.78538 3.93469 4.01874 4.05244 4.20895 4.29620 4.30683 4.34159 4.36780 4.54853 4.55968 4.61751 4.62624 4.65235 4.68120 4.73851 4.74624 4.83673 4.87987 4.91517 4.96417 4.99550 5.05896 5.20275 5.21034 5.25349 5.32337 5.33250 5.44315 5.52431 5.60174 5.81937 6.13003 6.36089 6.48903 6.76618 6.97888 7.22533 7.28624 7.31587 8.85561 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.002533 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.896578 B =11049.926392 C =11747.123644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.116 3.884 3 H 0.070 0.930 4 O -0.576 6.576 5 C -0.163 4.163 6 C 0.504 3.496 7 O -0.583 6.583 8 N -0.603 5.603 9 C 0.092 3.908 10 C -0.103 4.103 11 C -0.087 4.087 12 C -0.106 4.106 13 C 0.090 3.910 14 N -0.620 5.620 15 C 0.144 3.856 16 C 0.024 3.976 17 C -0.544 4.544 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.262 1.262 25 C 0.507 3.493 26 O -0.571 6.571 27 C -0.102 4.102 28 C 0.110 3.890 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.384 0.616 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.089 0.911 45 H -0.003 1.003 46 H -0.030 1.030 47 H 0.264 0.736 48 H 0.106 0.894 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.698 -14.142 -11.919 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.056 3.944 3 H 0.088 0.912 4 O -0.383 6.383 5 C -0.203 4.203 6 C 0.294 3.706 7 O -0.463 6.463 8 N -0.336 5.336 9 C -0.030 4.030 10 C -0.141 4.141 11 C -0.090 4.090 12 C -0.143 4.143 13 C -0.032 4.032 14 N -0.352 5.352 15 C 0.022 3.978 16 C -0.014 4.014 17 C -0.582 4.582 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.211 1.211 24 H -0.186 1.186 25 C 0.296 3.704 26 O -0.451 6.451 27 C -0.140 4.140 28 C -0.014 4.014 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.233 0.767 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.015 0.985 46 H -0.011 1.011 47 H 0.073 0.927 48 H 0.125 0.875 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -21.213 -12.623 -12.253 27.558 hybrid contribution 1.157 0.783 1.170 1.822 sum -20.056 -11.840 -11.082 25.793 Atomic orbital electron populations 1.22427 0.93357 1.04141 1.03285 1.21628 0.93964 0.95683 0.83117 0.91219 1.86700 1.77796 1.29812 1.43984 1.22563 0.89585 1.05960 1.02146 1.21396 0.91711 0.77464 0.80000 1.90705 1.71387 1.44150 1.40093 1.48141 1.06431 1.54579 1.24435 1.22255 0.97416 0.92720 0.90602 1.21857 0.90644 0.96719 1.04911 1.21069 0.99296 0.97101 0.91576 1.22785 0.97438 0.93911 1.00160 1.22393 0.98568 0.87159 0.95109 1.48699 1.38349 1.27633 1.20511 1.21318 0.95193 0.98547 0.82763 1.19203 0.92943 0.93270 0.95959 1.21559 1.13886 1.29393 0.93367 0.91406 1.26049 0.97155 0.95875 1.00878 1.70121 1.23187 1.34570 1.29526 0.85370 0.78776 0.77572 0.78880 1.18994 1.21107 1.18611 1.21402 0.78766 0.83661 0.86599 1.90612 1.55903 1.25115 1.73454 1.21678 0.99473 0.94793 0.98091 1.21379 0.81257 0.97906 1.00859 0.89930 0.92147 0.90365 0.76699 0.86159 0.84823 0.91816 0.86087 0.87265 0.88769 0.86908 0.86421 0.88274 0.92115 0.92801 0.89231 0.98489 1.01148 0.92748 0.87516 0.91619 0.90724 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.53 71.98 0.69 -0.92 16 2 C 0.12 1.93 3.13 30.59 0.10 2.02 16 3 H 0.07 1.61 7.95 -2.39 -0.02 1.59 16 4 O -0.58 -11.62 12.57 -135.21 -1.70 -13.32 16 5 C -0.16 -2.29 3.73 29.85 0.11 -2.18 16 6 C 0.50 13.00 7.58 87.66 0.66 13.66 16 7 O -0.58 -20.96 14.83 10.74 0.16 -20.81 16 8 N -0.60 -15.32 2.96 -817.82 -2.42 -17.74 16 9 C 0.09 1.78 5.94 86.53 0.51 2.29 16 10 C -0.10 -1.56 4.81 30.67 0.15 -1.42 16 11 C -0.09 -1.89 0.55 -52.81 -0.03 -1.92 16 12 C -0.11 -1.54 6.20 31.54 0.20 -1.34 16 13 C 0.09 2.06 7.35 86.86 0.64 2.70 16 14 N -0.62 -21.27 2.94 -818.09 -2.40 -23.67 16 15 C 0.14 6.03 5.87 86.38 0.51 6.54 16 16 C 0.02 1.33 5.30 29.85 0.16 1.48 16 17 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 18 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 19 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 20 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 21 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 C 0.51 17.36 6.24 87.73 0.55 17.91 16 26 O -0.57 -24.54 13.73 -3.02 -0.04 -24.59 16 27 C -0.10 -2.46 4.77 30.51 0.15 -2.32 16 28 C 0.11 3.43 6.02 86.37 0.52 3.95 16 29 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.38 3.96 9.05 -74.05 -0.67 3.29 16 33 H 0.12 1.28 7.92 -2.39 -0.02 1.26 16 34 H 0.13 0.86 7.71 -2.39 -0.02 0.84 16 35 H 0.06 1.75 5.85 -2.39 -0.01 1.74 16 36 H 0.12 1.28 5.92 -2.39 -0.01 1.27 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.19 8.13 -2.38 -0.02 1.17 16 39 H 0.11 1.04 7.88 -2.38 -0.02 1.02 16 40 H 0.12 1.13 7.87 -2.39 -0.02 1.11 16 41 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.05 2.41 7.94 -2.39 -0.02 2.39 16 44 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 45 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 47 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 48 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.07 1.78 8.14 -2.38 -0.02 1.77 16 50 H 0.07 2.54 7.00 -2.38 -0.02 2.53 16 51 H 0.03 1.35 6.84 -2.39 -0.02 1.33 16 Total: -1.00 -89.10 398.45 1.76 -87.35 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.25 Total: 14.55 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.60 Total: 9.67 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -4.54 Total: -99.78 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -1.58 Total: -58.71 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -89.10 1.76 -87.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270416831.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.373 kcal (2) G-P(sol) polarization free energy of solvation -89.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds