Wall clock time and date at job start Tue Mar 31 2020 21:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 H 1.09002 * 109.47259 * 30.00319 * 3 2 1 5 5 C 1.52997 * 109.47319 * 270.00076 * 3 2 1 6 6 C 1.53002 * 109.47113 * 150.00334 * 3 2 1 7 7 C 1.50703 * 109.46970 * 295.00142 * 6 3 2 8 8 O 1.21282 * 119.99998 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00049 * 180.02562 * 7 6 3 10 10 C 1.47130 * 125.60514 * 0.02562 * 9 7 6 11 11 C 1.54586 * 107.32598 * 180.90220 * 10 9 7 12 12 C 1.53701 * 102.78419 * 20.88050 * 11 10 9 13 13 C 1.53219 * 111.55008 * 206.03216 * 12 11 10 14 14 C 1.54800 * 101.38709 * 214.16542 * 13 12 11 15 15 N 1.46925 * 105.54211 * 24.17789 * 14 13 12 16 16 C 1.46500 * 124.37489 * 163.27346 * 15 14 13 17 17 C 1.53002 * 109.47158 * 89.99908 * 16 15 14 18 18 C 1.50698 * 109.47338 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99815 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00451 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99764 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47156 * 59.99945 * 22 20 18 24 24 H 1.48499 * 109.47549 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47204 * 300.00202 * 22 20 18 26 26 C 1.34888 * 111.24507 * 343.24845 * 15 14 13 27 27 O 1.21279 * 125.21939 * 181.22115 * 26 15 14 28 28 C 1.47705 * 125.60474 * 179.71548 * 9 7 6 29 29 H 1.09002 * 109.47082 * 300.00110 * 1 2 3 30 30 H 1.08997 * 109.47374 * 59.99540 * 1 2 3 31 31 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00307 * 5 3 2 33 33 H 1.08998 * 109.47533 * 59.99936 * 5 3 2 34 34 H 1.08996 * 109.47853 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47059 * 54.99840 * 6 3 2 36 36 H 1.08996 * 109.47073 * 174.99932 * 6 3 2 37 37 H 1.08999 * 109.87155 * 300.33570 * 10 9 7 38 38 H 1.08993 * 109.87863 * 61.32727 * 10 9 7 39 39 H 1.09004 * 110.75073 * 139.19785 * 11 10 9 40 40 H 1.08996 * 110.75255 * 262.55709 * 11 10 9 41 41 H 1.09001 * 111.03716 * 332.19469 * 13 12 11 42 42 H 1.09002 * 111.03747 * 96.09809 * 13 12 11 43 43 H 1.09006 * 110.23054 * 143.19413 * 14 13 12 44 44 H 1.09003 * 110.23004 * 265.06595 * 14 13 12 45 45 H 1.08998 * 109.47078 * 209.99128 * 16 15 14 46 46 H 1.08993 * 109.47672 * 329.99760 * 16 15 14 47 47 H 1.09000 * 109.47209 * 299.99410 * 17 16 15 48 48 H 1.09002 * 109.47206 * 59.99509 * 17 16 15 49 49 H 0.97000 * 120.00089 * 180.02562 * 21 20 18 50 50 H 1.08997 * 110.38778 * 276.23901 * 28 9 7 51 51 H 1.08998 * 110.39025 * 38.62227 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1417 0.9235 2.1733 8 8 2.0187 0.7343 2.5903 9 7 4.1953 0.8310 3.0086 10 6 5.6039 1.0367 2.6368 11 6 6.4538 0.8061 3.9074 12 6 5.5196 -0.0330 4.7938 13 6 5.8435 0.1463 6.2806 14 6 5.5300 -1.2650 6.8340 15 7 5.6671 -2.1761 5.6895 16 6 5.8075 -3.6300 5.8018 17 6 4.4221 -4.2791 5.7828 18 6 4.5665 -5.7747 5.8977 19 1 5.5481 -6.2180 5.9768 20 6 3.4453 -6.5772 5.9029 21 7 2.2499 -6.0374 5.8081 22 14 3.6243 -8.4311 6.0460 23 1 4.3105 -8.7653 7.3198 24 1 2.2796 -9.0611 6.0287 25 1 4.4249 -8.9407 4.9040 26 6 5.6466 -1.5008 4.5220 27 8 5.7200 -2.0045 3.4212 28 6 4.1251 0.5127 4.4493 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.8829 1.0775 -1.9563 33 1 1.2569 1.8015 -1.9563 34 1 2.6614 2.7670 -1.4426 35 1 3.9931 0.5051 0.2616 36 1 3.8427 2.2370 0.6443 37 1 5.8912 0.3233 1.8644 38 1 5.7464 2.0541 2.2729 39 1 7.3615 0.2515 3.6694 40 1 6.6941 1.7541 4.3885 41 1 6.8940 0.3987 6.4246 42 1 5.1970 0.8976 6.7341 43 1 6.2428 -1.5307 7.6148 44 1 4.5131 -1.2992 7.2251 45 1 6.3954 -4.0041 4.9636 46 1 6.3108 -3.8754 6.7368 47 1 3.8341 -3.9051 6.6209 48 1 3.9187 -4.0338 4.8476 49 1 1.4611 -6.6019 5.8121 50 1 3.9133 1.4124 5.0270 51 1 3.3646 -0.2460 4.6340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271196282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:11 Heat of formation + Delta-G solvation = -116.867753 kcal Electronic energy + Delta-G solvation = -30790.156396 eV Core-core repulsion = 26689.437850 eV Total energy + Delta-G solvation = -4100.718546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12904 -39.54374 -37.97499 -36.78583 -36.00854 -33.86515 -32.98099 -32.34312 -30.52358 -29.31242 -28.57418 -27.60007 -26.49994 -25.22627 -24.39366 -22.79313 -21.92934 -21.57410 -20.40386 -19.31240 -18.66893 -17.19556 -16.92406 -16.57302 -16.29768 -15.67070 -15.64364 -15.47501 -15.07520 -14.83149 -14.40240 -14.35121 -14.21108 -13.80242 -13.25595 -13.18324 -13.09382 -12.90328 -12.67478 -12.66522 -12.62009 -12.36043 -12.29457 -12.09726 -11.94616 -11.88995 -11.55082 -11.45637 -11.30528 -11.03465 -10.89225 -10.87643 -10.78381 -10.67147 -9.97376 -9.83245 -9.74425 -9.56551 -9.34371 -9.08679 -8.60985 -8.33755 -8.01402 -5.98102 -4.02430 2.73987 2.93176 2.95876 3.35133 3.39379 3.41152 3.52459 3.78555 4.17389 4.28189 4.34549 4.48291 4.61751 4.64350 4.73621 4.91907 4.99952 5.05629 5.13203 5.21808 5.30592 5.31089 5.36420 5.37537 5.41950 5.47407 5.49312 5.54711 5.56678 5.60572 5.67320 5.72663 5.77953 5.83124 5.85129 5.91032 5.97703 6.01523 6.07007 6.25214 6.45497 6.82343 6.99683 7.24981 7.50402 7.54283 7.69039 7.86514 8.00893 8.26545 8.36317 8.65902 9.04073 9.61482 11.13115 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.003358 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.558934 B = 8337.387674 C =10507.118120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.373 6.373 3 C 0.099 3.901 4 H 0.067 0.933 5 C -0.174 4.174 6 C -0.135 4.135 7 C 0.534 3.466 8 O -0.531 6.531 9 N -0.617 5.617 10 C 0.104 3.896 11 C -0.105 4.105 12 C -0.115 4.115 13 C -0.117 4.117 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.129 3.871 17 C 0.012 3.988 18 C -0.525 4.525 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.528 3.472 27 O -0.519 6.519 28 C 0.134 3.866 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.262 0.738 50 H 0.078 0.922 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 22.961 -6.046 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.292 6.292 3 C 0.041 3.959 4 H 0.085 0.915 5 C -0.232 4.232 6 C -0.175 4.175 7 C 0.323 3.677 8 O -0.407 6.407 9 N -0.352 5.352 10 C -0.019 4.019 11 C -0.143 4.143 12 C -0.119 4.119 13 C -0.155 4.155 14 C -0.024 4.024 15 N -0.345 5.345 16 C 0.009 3.991 17 C -0.026 4.026 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.314 3.686 27 O -0.395 6.395 28 C 0.011 3.989 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.035 0.965 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.096 0.904 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.626 22.271 -6.466 23.864 hybrid contribution -0.168 -0.951 0.200 0.986 sum 5.458 21.321 -6.266 22.883 Atomic orbital electron populations 1.22703 0.81005 1.02710 0.99418 1.87954 1.19812 1.26558 1.94871 1.21776 0.93516 0.86130 0.94505 0.91533 1.22297 1.02602 1.01478 0.96798 1.21821 0.99214 1.04128 0.92331 1.20158 0.83477 0.76700 0.87387 1.90710 1.22750 1.49615 1.77602 1.48476 1.06681 1.70533 1.09522 1.22074 0.80647 1.00861 0.98309 1.22366 0.97854 0.99740 0.94347 1.21647 0.97433 0.95532 0.97312 1.22475 1.03054 0.97511 0.92469 1.22121 1.02332 0.88266 0.89646 1.48676 1.71440 1.08246 1.06150 1.21804 1.01414 0.74785 1.01058 1.19397 0.90398 0.95003 0.97786 1.21030 0.92756 0.91343 1.51209 0.92567 1.25008 0.95280 0.98850 0.95116 1.69970 0.97610 1.35491 1.49840 0.86613 0.77175 0.85317 0.78623 1.20218 1.21242 1.20146 1.19868 0.76517 0.87740 0.84493 1.90702 1.49931 1.74390 1.24445 1.21892 0.95375 1.00101 0.81507 0.93606 0.94825 0.89823 0.91568 0.92186 0.91633 0.87848 0.87956 0.90565 0.91371 0.89466 0.89586 0.89490 0.88995 0.90401 0.90921 0.91195 0.91599 0.96509 0.96131 0.92847 0.90374 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.82 101.05 1.09 1.58 16 2 O -0.37 -5.70 9.58 -49.64 -0.48 -6.17 16 3 C 0.10 1.16 2.27 -26.73 -0.06 1.10 16 4 H 0.07 0.78 7.60 -51.93 -0.39 0.39 16 5 C -0.17 -1.48 9.53 37.16 0.35 -1.13 16 6 C -0.14 -1.52 4.60 -27.88 -0.13 -1.65 16 7 C 0.53 8.18 7.73 -10.98 -0.08 8.09 16 8 O -0.53 -10.20 15.70 -8.85 -0.14 -10.34 16 9 N -0.62 -8.51 3.34 -170.82 -0.57 -9.08 16 10 C 0.10 1.08 6.24 -2.86 -0.02 1.06 16 11 C -0.10 -1.00 5.79 -25.53 -0.15 -1.15 16 12 C -0.11 -1.45 0.67 -155.27 -0.10 -1.56 16 13 C -0.12 -1.10 6.26 -25.67 -0.16 -1.26 16 14 C 0.10 1.29 7.37 -2.86 -0.02 1.27 16 15 N -0.61 -11.07 2.95 -172.57 -0.51 -11.58 16 16 C 0.13 2.77 5.88 -4.04 -0.02 2.75 16 17 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 18 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 22 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C 0.53 9.69 6.79 -11.36 -0.08 9.61 16 27 O -0.52 -11.70 17.27 5.56 0.10 -11.61 16 28 C 0.13 1.85 5.89 -3.04 -0.02 1.83 16 29 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.03 0.33 7.87 -51.93 -0.41 -0.07 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.86 8.00 -51.93 -0.42 0.44 16 40 H 0.09 0.56 8.04 -51.93 -0.42 0.14 16 41 H 0.09 0.64 7.96 -51.93 -0.41 0.23 16 42 H 0.09 0.66 7.63 -51.93 -0.40 0.26 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.58 7.96 -51.93 -0.41 1.16 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 51 H 0.08 1.48 7.95 -51.93 -0.41 1.07 16 LS Contribution 413.17 15.07 6.23 6.23 Total: -1.00 -38.76 413.17 -8.73 -47.49 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -9.12 Total: -1.90 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 0.04 Total: 6.87 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.34 Total: -47.73 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.52 Total: -28.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -38.76 -8.73 -47.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271196282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.382 kcal (2) G-P(sol) polarization free energy of solvation -38.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds