Wall clock time and date at job start Tue Mar 31 2020 21:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 H 1.09002 * 109.47259 * 30.00319 * 3 2 1 5 5 C 1.52997 * 109.47319 * 270.00076 * 3 2 1 6 6 C 1.53002 * 109.47113 * 150.00334 * 3 2 1 7 7 C 1.50703 * 109.46970 * 295.00142 * 6 3 2 8 8 O 1.21282 * 119.99998 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00049 * 180.02562 * 7 6 3 10 10 C 1.47130 * 125.60514 * 0.02562 * 9 7 6 11 11 C 1.54586 * 107.32598 * 180.90220 * 10 9 7 12 12 C 1.53701 * 102.78419 * 20.88050 * 11 10 9 13 13 C 1.53219 * 111.55008 * 206.03216 * 12 11 10 14 14 C 1.54800 * 101.38709 * 214.16542 * 13 12 11 15 15 N 1.46925 * 105.54211 * 24.17789 * 14 13 12 16 16 C 1.46500 * 124.37489 * 163.27346 * 15 14 13 17 17 C 1.53002 * 109.47158 * 89.99908 * 16 15 14 18 18 C 1.50698 * 109.47338 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99815 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00451 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99764 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47156 * 59.99945 * 22 20 18 24 24 H 1.48499 * 109.47549 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47204 * 300.00202 * 22 20 18 26 26 C 1.34888 * 111.24507 * 343.24845 * 15 14 13 27 27 O 1.21279 * 125.21939 * 181.22115 * 26 15 14 28 28 C 1.47705 * 125.60474 * 179.71548 * 9 7 6 29 29 H 1.09002 * 109.47082 * 300.00110 * 1 2 3 30 30 H 1.08997 * 109.47374 * 59.99540 * 1 2 3 31 31 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00307 * 5 3 2 33 33 H 1.08998 * 109.47533 * 59.99936 * 5 3 2 34 34 H 1.08996 * 109.47853 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47059 * 54.99840 * 6 3 2 36 36 H 1.08996 * 109.47073 * 174.99932 * 6 3 2 37 37 H 1.08999 * 109.87155 * 300.33570 * 10 9 7 38 38 H 1.08993 * 109.87863 * 61.32727 * 10 9 7 39 39 H 1.09004 * 110.75073 * 139.19785 * 11 10 9 40 40 H 1.08996 * 110.75255 * 262.55709 * 11 10 9 41 41 H 1.09001 * 111.03716 * 332.19469 * 13 12 11 42 42 H 1.09002 * 111.03747 * 96.09809 * 13 12 11 43 43 H 1.09006 * 110.23054 * 143.19413 * 14 13 12 44 44 H 1.09003 * 110.23004 * 265.06595 * 14 13 12 45 45 H 1.08998 * 109.47078 * 209.99128 * 16 15 14 46 46 H 1.08993 * 109.47672 * 329.99760 * 16 15 14 47 47 H 1.09000 * 109.47209 * 299.99410 * 17 16 15 48 48 H 1.09002 * 109.47206 * 59.99509 * 17 16 15 49 49 H 0.97000 * 120.00089 * 180.02562 * 21 20 18 50 50 H 1.08997 * 110.38778 * 276.23901 * 28 9 7 51 51 H 1.08998 * 110.39025 * 38.62227 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1417 0.9235 2.1733 8 8 2.0187 0.7343 2.5903 9 7 4.1953 0.8310 3.0086 10 6 5.6039 1.0367 2.6368 11 6 6.4538 0.8061 3.9074 12 6 5.5196 -0.0330 4.7938 13 6 5.8435 0.1463 6.2806 14 6 5.5300 -1.2650 6.8340 15 7 5.6671 -2.1761 5.6895 16 6 5.8075 -3.6300 5.8018 17 6 4.4221 -4.2791 5.7828 18 6 4.5665 -5.7747 5.8977 19 1 5.5481 -6.2180 5.9768 20 6 3.4453 -6.5772 5.9029 21 7 2.2499 -6.0374 5.8081 22 14 3.6243 -8.4311 6.0460 23 1 4.3105 -8.7653 7.3198 24 1 2.2796 -9.0611 6.0287 25 1 4.4249 -8.9407 4.9040 26 6 5.6466 -1.5008 4.5220 27 8 5.7200 -2.0045 3.4212 28 6 4.1251 0.5127 4.4493 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.8829 1.0775 -1.9563 33 1 1.2569 1.8015 -1.9563 34 1 2.6614 2.7670 -1.4426 35 1 3.9931 0.5051 0.2616 36 1 3.8427 2.2370 0.6443 37 1 5.8912 0.3233 1.8644 38 1 5.7464 2.0541 2.2729 39 1 7.3615 0.2515 3.6694 40 1 6.6941 1.7541 4.3885 41 1 6.8940 0.3987 6.4246 42 1 5.1970 0.8976 6.7341 43 1 6.2428 -1.5307 7.6148 44 1 4.5131 -1.2992 7.2251 45 1 6.3954 -4.0041 4.9636 46 1 6.3108 -3.8754 6.7368 47 1 3.8341 -3.9051 6.6209 48 1 3.9187 -4.0338 4.8476 49 1 1.4611 -6.6019 5.8121 50 1 3.9133 1.4124 5.0270 51 1 3.3646 -0.2460 4.6340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271196282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:10 Heat of formation + Delta-G solvation = -144.678465 kcal Electronic energy + Delta-G solvation = -30791.362359 eV Core-core repulsion = 26689.437850 eV Total energy + Delta-G solvation = -4101.924509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29107 -40.71387 -39.04532 -38.01081 -37.48125 -35.72501 -34.26039 -33.71515 -31.94557 -30.50513 -29.75838 -28.56609 -27.54357 -27.07334 -25.59360 -23.96310 -23.44030 -22.48316 -21.83276 -20.36999 -19.99142 -18.73258 -18.27630 -17.89798 -17.41148 -17.15486 -16.87719 -16.64898 -16.55838 -16.11198 -15.96994 -15.45693 -15.34571 -14.89873 -14.64475 -14.51992 -14.36965 -14.07827 -13.94732 -13.91789 -13.66370 -13.60757 -13.44828 -13.15935 -12.99088 -12.94985 -12.90535 -12.86107 -12.59184 -12.41167 -12.37868 -12.06827 -12.00973 -11.82764 -11.68322 -11.67306 -11.47084 -10.92585 -10.67311 -10.60884 -10.56765 -9.69935 -9.56835 -8.27944 -6.42801 1.34690 1.40193 1.47597 1.50771 1.61553 1.96051 2.13703 2.38013 2.86266 3.05036 3.23454 3.28363 3.35688 3.69815 3.80153 3.85007 3.99729 4.15232 4.23726 4.26907 4.30384 4.35175 4.38637 4.43462 4.47944 4.52179 4.57667 4.59286 4.64089 4.66797 4.72090 4.77152 4.78399 4.82169 4.85079 4.94070 4.99036 5.01220 5.11343 5.22336 5.25759 5.28381 5.31264 5.39168 5.55306 5.77418 6.09089 6.27543 6.29255 6.49100 6.73377 7.13957 7.19732 7.28068 8.84201 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.003358 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.558934 B = 8337.387674 C =10507.118120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.412 6.412 3 C 0.090 3.910 4 H 0.062 0.938 5 C -0.164 4.164 6 C -0.128 4.128 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.622 5.622 10 C 0.097 3.903 11 C -0.094 4.094 12 C -0.108 4.108 13 C -0.096 4.096 14 C 0.086 3.914 15 N -0.623 5.623 16 C 0.144 3.856 17 C 0.025 3.975 18 C -0.547 4.547 19 H 0.071 0.929 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.975 3.025 23 H -0.255 1.255 24 H -0.283 1.283 25 H -0.268 1.268 26 C 0.509 3.491 27 O -0.577 6.577 28 C 0.131 3.869 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.150 0.850 37 H 0.054 0.946 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.095 0.905 47 H -0.004 1.004 48 H -0.039 1.039 49 H 0.264 0.736 50 H 0.117 0.883 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 25.507 -5.252 27.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.332 6.332 3 C 0.032 3.968 4 H 0.080 0.920 5 C -0.221 4.221 6 C -0.167 4.167 7 C 0.308 3.692 8 O -0.466 6.466 9 N -0.355 5.355 10 C -0.025 4.025 11 C -0.132 4.132 12 C -0.112 4.112 13 C -0.133 4.133 14 C -0.035 4.035 15 N -0.354 5.354 16 C 0.022 3.978 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.089 0.911 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.798 3.202 23 H -0.180 1.180 24 H -0.209 1.209 25 H -0.193 1.193 26 C 0.297 3.703 27 O -0.457 6.457 28 C 0.008 3.992 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.167 0.833 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.156 0.844 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.014 0.986 48 H -0.020 1.020 49 H 0.073 0.927 50 H 0.135 0.865 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.607 24.861 -5.635 26.906 hybrid contribution -1.124 -1.767 -0.035 2.094 sum 7.483 23.095 -5.670 24.930 Atomic orbital electron populations 1.22735 0.80336 1.02616 1.00183 1.87893 1.20914 1.29207 1.95200 1.22065 0.93404 0.84619 0.96704 0.92031 1.22229 1.03022 1.02795 0.94098 1.21927 0.99304 1.06320 0.89137 1.21012 0.83088 0.76007 0.89080 1.90675 1.24948 1.52193 1.78791 1.48698 1.07997 1.69379 1.09465 1.22377 0.78533 1.02958 0.98635 1.22509 0.96444 1.01129 0.93114 1.21625 0.97695 0.91222 1.00632 1.22610 1.06132 0.95508 0.89049 1.22520 1.02552 0.89727 0.88741 1.48832 1.70931 1.07373 1.08311 1.21332 0.97437 0.77286 1.01727 1.19198 0.93051 0.95425 0.93665 1.21533 0.93583 0.92377 1.51029 0.91118 1.26134 0.94689 1.05042 0.94299 1.70146 0.98697 1.37803 1.50900 0.85353 0.77455 0.77783 0.79571 1.17952 1.20882 1.19344 1.21062 0.74942 0.90662 0.83597 1.90651 1.52219 1.76215 1.26579 1.21994 0.94574 1.00054 0.82621 0.94919 0.91839 0.90484 0.91884 0.91857 0.88651 0.88275 0.83272 0.92700 0.86610 0.89661 0.84441 0.85687 0.85593 0.87605 0.92346 0.92919 0.88644 0.98593 1.02033 0.92728 0.86496 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.02 10.82 113.37 1.23 2.25 16 2 O -0.41 -13.37 9.58 -135.20 -1.30 -14.67 16 3 C 0.09 2.11 2.27 30.59 0.07 2.18 16 4 H 0.06 1.48 7.60 -2.39 -0.02 1.46 16 5 C -0.16 -2.52 9.53 71.98 0.69 -1.83 16 6 C -0.13 -2.80 4.60 29.85 0.14 -2.66 16 7 C 0.52 16.39 7.73 87.66 0.68 17.07 16 8 O -0.59 -24.23 15.70 10.74 0.17 -24.06 16 9 N -0.62 -17.01 3.34 -812.75 -2.71 -19.72 16 10 C 0.10 1.77 6.24 86.80 0.54 2.31 16 11 C -0.09 -1.43 5.79 31.37 0.18 -1.25 16 12 C -0.11 -2.54 0.67 -52.67 -0.04 -2.58 16 13 C -0.10 -1.40 6.26 31.28 0.20 -1.20 16 14 C 0.09 2.11 7.37 86.91 0.64 2.75 16 15 N -0.62 -23.14 2.95 -818.20 -2.41 -25.55 16 16 C 0.14 6.44 5.88 86.38 0.51 6.94 16 17 C 0.02 1.43 5.30 29.85 0.16 1.59 16 18 C -0.55 -32.91 9.11 25.60 0.23 -32.67 16 19 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 20 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 21 N -0.94 -61.24 13.29 21.45 0.28 -60.96 16 22 Si 0.98 46.29 29.54 68.60 2.03 48.32 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 26 C 0.51 19.38 6.79 87.36 0.59 19.97 16 27 O -0.58 -27.91 17.27 -3.03 -0.05 -27.96 16 28 C 0.13 3.60 5.89 86.37 0.51 4.10 16 29 H 0.03 0.94 8.09 -2.39 -0.02 0.92 16 30 H 0.06 1.29 7.87 -2.39 -0.02 1.27 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.93 7.87 -2.39 -0.02 0.91 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.41 8.00 -2.38 -0.02 1.39 16 40 H 0.14 0.78 8.04 -2.39 -0.02 0.76 16 41 H 0.12 1.01 7.96 -2.39 -0.02 0.99 16 42 H 0.13 1.10 7.63 -2.39 -0.02 1.08 16 43 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 2.51 7.96 -2.39 -0.02 2.49 16 46 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 47 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 48 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 49 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 50 H 0.12 2.29 7.75 -2.39 -0.02 2.27 16 51 H 0.03 1.01 7.95 -2.39 -0.02 0.99 16 Total: -1.00 -97.40 413.17 3.68 -93.72 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.89 Total: 13.68 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.78 Total: 17.21 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -4.84 Total: -106.24 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: -1.18 Total: -66.69 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -97.40 3.68 -93.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271196282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.960 kcal (2) G-P(sol) polarization free energy of solvation -97.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds