Wall clock time and date at job start Tue Mar 31 2020 21:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00005 * 2 1 4 4 H 1.09008 * 109.46939 * 329.99902 * 3 2 1 5 5 C 1.52998 * 109.47225 * 89.99693 * 3 2 1 6 6 C 1.53001 * 109.47309 * 209.99970 * 3 2 1 7 7 C 1.50699 * 109.46903 * 64.99907 * 6 3 2 8 8 O 1.21284 * 120.00400 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00055 * 180.02562 * 7 6 3 10 10 C 1.47654 * 125.80895 * 0.02562 * 9 7 6 11 11 C 1.54984 * 104.85408 * 155.97803 * 10 9 7 12 12 C 1.55327 * 101.66444 * 36.60584 * 11 10 9 13 13 C 1.46705 * 125.75636 * 179.97438 * 9 7 6 14 14 C 1.53915 * 110.97963 * 302.17742 * 13 9 7 15 15 C 1.54638 * 101.58886 * 145.04169 * 14 13 9 16 16 N 1.46848 * 105.50540 * 335.21867 * 15 14 13 17 17 C 1.46498 * 124.36735 * 196.87691 * 16 15 14 18 18 C 1.52999 * 109.46935 * 270.02136 * 17 16 15 19 19 C 1.50696 * 109.47166 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00363 * 0.02562 * 19 18 17 21 21 C 1.37888 * 120.00131 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99582 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99809 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47056 * 90.00417 * 23 21 19 25 25 H 1.48500 * 109.46705 * 209.99855 * 23 21 19 26 26 H 1.48497 * 109.47416 * 329.99951 * 23 21 19 27 27 C 1.34662 * 111.26562 * 16.87118 * 16 15 14 28 28 O 1.21275 * 125.07398 * 179.17609 * 27 16 15 29 29 H 1.09002 * 109.47184 * 60.00284 * 1 2 3 30 30 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47570 * 300.00027 * 1 2 3 32 32 H 1.08997 * 109.47357 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47164 * 300.00014 * 5 3 2 34 34 H 1.08994 * 109.46995 * 60.00336 * 5 3 2 35 35 H 1.08996 * 109.46821 * 304.99789 * 6 3 2 36 36 H 1.09005 * 109.47056 * 184.99777 * 6 3 2 37 37 H 1.09005 * 110.36331 * 37.13783 * 10 9 7 38 38 H 1.08996 * 110.36957 * 274.82505 * 10 9 7 39 39 H 1.09006 * 110.98514 * 278.51799 * 11 10 9 40 40 H 1.08996 * 111.02371 * 154.71436 * 11 10 9 41 41 H 1.09002 * 110.76074 * 83.40966 * 12 11 10 42 42 H 1.08997 * 110.76519 * 206.60967 * 12 11 10 43 43 H 1.08996 * 110.99928 * 263.12252 * 14 13 9 44 44 H 1.09000 * 110.99782 * 26.96458 * 14 13 9 45 45 H 1.08997 * 110.24047 * 216.20623 * 15 14 13 46 46 H 1.09007 * 110.30974 * 94.26380 * 15 14 13 47 47 H 1.09004 * 109.47419 * 30.01707 * 17 16 15 48 48 H 1.08997 * 109.47338 * 150.02337 * 17 16 15 49 49 H 1.09002 * 109.47179 * 300.00224 * 18 17 16 50 50 H 1.09005 * 109.47206 * 60.00106 * 18 17 16 51 51 H 0.97000 * 119.99557 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 6 3.1416 0.9236 -2.1733 8 8 2.0186 0.7334 -2.5902 9 7 4.1952 0.8301 -3.0085 10 6 5.6105 1.0333 -2.6399 11 6 6.4152 0.2416 -3.7018 12 6 5.5667 0.4799 -4.9808 13 6 4.1298 0.5079 -4.4383 14 6 3.4461 -0.8521 -4.6660 15 6 2.6900 -0.6015 -5.9915 16 7 2.4788 0.8503 -6.0546 17 6 1.5126 1.5078 -6.9380 18 6 2.1844 1.8382 -8.2723 19 6 1.1905 2.5140 -9.1813 20 1 0.1807 2.6906 -8.8413 21 6 1.5704 2.9079 -10.4470 22 7 2.8002 2.6933 -10.8609 23 14 0.3385 3.7462 -11.5734 24 1 0.3996 5.2156 -11.3675 25 1 0.6658 3.4305 -12.9871 26 1 -1.0291 3.2590 -11.2613 27 6 3.2876 1.4993 -5.1955 28 8 3.3310 2.7029 -5.0533 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.6605 2.7673 1.4425 33 1 1.2568 1.8015 1.9562 34 1 2.8828 1.0776 1.9563 35 1 3.9930 0.5052 -0.2617 36 1 3.8426 2.2371 -0.6443 37 1 5.8038 0.6358 -1.6435 38 1 5.8654 2.0922 -2.6827 39 1 6.4546 -0.8185 -3.4514 40 1 7.4188 0.6511 -3.8173 41 1 5.8239 1.4329 -5.4432 42 1 5.6964 -0.3387 -5.6887 43 1 4.1841 -1.6459 -4.7811 44 1 2.7518 -1.0805 -3.8573 45 1 1.7323 -1.1220 -5.9835 46 1 3.2913 -0.9323 -6.8384 47 1 0.6674 0.8418 -7.1119 48 1 1.1605 2.4275 -6.4709 49 1 3.0297 2.5042 -8.0985 50 1 2.5366 0.9185 -8.7395 51 1 3.0673 2.9701 -11.7514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271197970.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:42 Heat of formation + Delta-G solvation = -113.845862 kcal Electronic energy + Delta-G solvation = -31320.029690 eV Core-core repulsion = 27219.442183 eV Total energy + Delta-G solvation = -4100.587507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22638 -39.27209 -37.96942 -36.97476 -35.85724 -33.68986 -33.05930 -31.91595 -31.58802 -29.13953 -28.24754 -27.69496 -26.62850 -25.10340 -24.15386 -22.82046 -21.98995 -21.56903 -20.62686 -19.60996 -18.33873 -17.21915 -17.01871 -16.56932 -16.39999 -15.80188 -15.40967 -15.32106 -15.12553 -14.89375 -14.64669 -14.36805 -13.85114 -13.68170 -13.49209 -13.34472 -12.97912 -12.84511 -12.80155 -12.64814 -12.47416 -12.45014 -12.21045 -12.16991 -11.87157 -11.65963 -11.57187 -11.41822 -11.36442 -11.25972 -10.91985 -10.89248 -10.73331 -10.62436 -9.97066 -9.82142 -9.77123 -9.66474 -9.54988 -9.17470 -8.45782 -8.34331 -7.91874 -6.00035 -4.02886 2.57888 2.72950 3.23885 3.33747 3.39251 3.42624 3.62852 3.66827 4.22174 4.34893 4.47900 4.49598 4.54938 4.59615 4.79169 4.83005 4.94404 5.03897 5.10296 5.11867 5.20400 5.21746 5.29197 5.33728 5.36193 5.41520 5.44019 5.48032 5.59084 5.62046 5.67970 5.69629 5.75491 5.82428 5.87242 5.88274 5.98573 6.05516 6.14673 6.36666 6.56138 6.86445 7.07887 7.09088 7.45790 7.57381 7.70767 7.91252 8.00467 8.19734 8.37535 8.75558 9.03777 9.60795 11.11509 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.002991 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.322451 B = 9359.847986 C =10409.605796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.099 3.901 4 H 0.069 0.931 5 C -0.174 4.174 6 C -0.133 4.133 7 C 0.532 3.468 8 O -0.519 6.519 9 N -0.600 5.600 10 C 0.099 3.901 11 C -0.128 4.128 12 C -0.114 4.114 13 C 0.133 3.867 14 C -0.135 4.135 15 C 0.106 3.894 16 N -0.603 5.603 17 C 0.131 3.869 18 C 0.013 3.987 19 C -0.521 4.521 20 H 0.057 0.943 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.522 3.478 28 O -0.528 6.528 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.020 0.980 50 H 0.017 0.983 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -9.029 23.760 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.087 0.913 5 C -0.231 4.231 6 C -0.172 4.172 7 C 0.321 3.679 8 O -0.394 6.394 9 N -0.335 5.335 10 C -0.024 4.024 11 C -0.166 4.166 12 C -0.152 4.152 13 C 0.044 3.956 14 C -0.174 4.174 15 C -0.018 4.018 16 N -0.336 5.336 17 C 0.011 3.989 18 C -0.025 4.025 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C 0.306 3.694 28 O -0.404 6.404 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.038 0.962 50 H 0.036 0.964 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.153 -8.586 23.470 25.737 hybrid contribution -0.747 0.711 -0.802 1.306 sum 5.406 -7.876 22.668 24.599 Atomic orbital electron populations 1.22694 0.80951 1.02389 0.99827 1.87856 1.19863 1.26933 1.94970 1.21790 0.93588 0.85966 0.94598 0.91257 1.22287 1.02589 1.01632 0.96608 1.21814 0.99103 1.04271 0.92061 1.20205 0.83541 0.76695 0.87456 1.90729 1.22480 1.48744 1.77436 1.48306 1.06988 1.70628 1.07626 1.22436 0.80301 1.00698 0.98949 1.22806 0.98835 1.00891 0.94092 1.22535 0.90489 1.04374 0.97827 1.21202 0.97089 0.95173 0.82110 1.22930 1.00196 0.95657 0.98585 1.22021 1.00818 0.82115 0.96825 1.48415 1.38785 1.06805 1.39554 1.21789 0.89712 0.96163 0.91279 1.19406 0.96516 0.96964 0.89617 1.21105 0.97378 1.38792 0.98688 0.92495 1.25000 0.95299 0.95897 0.98081 1.69976 1.17184 1.47289 1.18813 0.86550 0.81498 0.79899 0.79803 1.20600 1.21200 1.19796 1.20320 0.80611 0.88234 0.80199 1.90663 1.68225 1.13956 1.67553 0.93407 0.90055 0.94731 0.91453 0.92153 0.91713 0.88152 0.87722 0.90266 0.90847 0.90239 0.89333 0.89578 0.88921 0.89395 0.89001 0.90523 0.90995 0.91645 0.91350 0.96173 0.96424 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.82 101.05 1.09 1.49 16 2 O -0.38 -4.67 9.58 -49.66 -0.48 -5.14 16 3 C 0.10 1.05 2.27 -26.73 -0.06 0.99 16 4 H 0.07 0.85 7.60 -51.92 -0.39 0.45 16 5 C -0.17 -1.32 9.53 37.16 0.35 -0.96 16 6 C -0.13 -1.33 4.43 -27.88 -0.12 -1.45 16 7 C 0.53 7.65 7.17 -10.98 -0.08 7.57 16 8 O -0.52 -9.44 13.88 -8.87 -0.12 -9.57 16 9 N -0.60 -7.94 2.92 -157.04 -0.46 -8.40 16 10 C 0.10 0.88 6.72 -2.36 -0.02 0.87 16 11 C -0.13 -1.01 7.09 -24.45 -0.17 -1.18 16 12 C -0.11 -1.34 5.95 -25.18 -0.15 -1.49 16 13 C 0.13 1.97 0.73 -132.15 -0.10 1.88 16 14 C -0.14 -1.77 6.06 -25.39 -0.15 -1.93 16 15 C 0.11 1.63 7.36 -2.99 -0.02 1.61 16 16 N -0.60 -12.18 2.94 -172.50 -0.51 -12.69 16 17 C 0.13 3.01 5.88 -4.04 -0.02 2.99 16 18 C 0.01 0.35 5.30 -27.89 -0.15 0.20 16 19 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.72 5.46 -17.81 -0.10 1.63 16 22 N -0.89 -27.39 13.29 55.43 0.74 -26.66 16 23 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.52 10.71 6.11 -11.12 -0.07 10.64 16 28 O -0.53 -12.97 17.62 5.56 0.10 -12.87 16 29 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.29 7.87 -51.93 -0.41 -0.11 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.48 7.50 -51.93 -0.39 0.09 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.18 7.91 -51.93 -0.41 0.77 16 42 H 0.09 0.95 7.63 -51.93 -0.40 0.55 16 43 H 0.09 0.86 7.68 -51.93 -0.40 0.47 16 44 H 0.09 1.34 6.55 -51.93 -0.34 1.00 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.07 1.69 7.94 -51.93 -0.41 1.28 16 49 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 409.32 15.07 6.17 6.17 Total: -1.00 -38.08 409.32 -8.66 -46.75 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -9.00 Total: -2.05 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.08 Total: 7.33 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.23 Total: -47.75 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.50 Total: -27.58 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -38.08 -8.66 -46.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271197970.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.100 kcal (2) G-P(sol) polarization free energy of solvation -38.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds