Wall clock time and date at job start Tue Mar 31 2020 21:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00029 * 2 1 4 4 H 1.09001 * 109.47017 * 29.99964 * 3 2 1 5 5 C 1.52996 * 109.46933 * 269.99646 * 3 2 1 6 6 C 1.53005 * 109.46864 * 149.99806 * 3 2 1 7 7 C 1.50702 * 109.47035 * 294.99697 * 6 3 2 8 8 O 1.21282 * 119.99969 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00210 * 180.02562 * 7 6 3 10 10 C 1.47654 * 125.80916 * 359.96694 * 9 7 6 11 11 C 1.54984 * 104.85408 * 156.00511 * 10 9 7 12 12 C 1.55327 * 101.66444 * 36.60584 * 11 10 9 13 13 C 1.46705 * 125.75616 * 179.97438 * 9 7 6 14 14 C 1.53915 * 110.97963 * 302.15037 * 13 9 7 15 15 C 1.54638 * 101.58886 * 145.04169 * 14 13 9 16 16 N 1.46848 * 105.50540 * 335.21867 * 15 14 13 17 17 C 1.46498 * 124.36735 * 196.87691 * 16 15 14 18 18 C 1.52999 * 109.46935 * 270.02136 * 17 16 15 19 19 C 1.50696 * 109.47166 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00363 * 0.02562 * 19 18 17 21 21 C 1.37888 * 120.00131 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99582 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99809 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47167 * 60.00298 * 23 21 19 25 25 H 1.48504 * 109.46747 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46998 * 299.99944 * 23 21 19 27 27 C 1.34662 * 111.26562 * 16.87118 * 16 15 14 28 28 O 1.21275 * 125.07398 * 179.17609 * 27 16 15 29 29 H 1.08996 * 109.47333 * 300.00912 * 1 2 3 30 30 H 1.09007 * 109.46723 * 59.99899 * 1 2 3 31 31 H 1.09000 * 109.47648 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47269 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.46828 * 299.99857 * 5 3 2 34 34 H 1.09001 * 109.47511 * 60.00134 * 5 3 2 35 35 H 1.09000 * 109.46720 * 175.00183 * 6 3 2 36 36 H 1.08995 * 109.47042 * 55.00011 * 6 3 2 37 37 H 1.09005 * 110.36331 * 37.16491 * 10 9 7 38 38 H 1.08996 * 110.36957 * 274.85213 * 10 9 7 39 39 H 1.09006 * 110.98514 * 278.51799 * 11 10 9 40 40 H 1.08992 * 110.99345 * 154.70217 * 11 10 9 41 41 H 1.09002 * 110.76074 * 83.40966 * 12 11 10 42 42 H 1.08997 * 110.76519 * 206.60967 * 12 11 10 43 43 H 1.08996 * 110.99928 * 263.12252 * 14 13 9 44 44 H 1.09000 * 110.99782 * 26.96458 * 14 13 9 45 45 H 1.08997 * 110.24047 * 216.20623 * 15 14 13 46 46 H 1.09007 * 110.30974 * 94.26380 * 15 14 13 47 47 H 1.09004 * 109.47419 * 30.01707 * 17 16 15 48 48 H 1.08997 * 109.47338 * 150.02337 * 17 16 15 49 49 H 1.09002 * 109.47179 * 300.00224 * 18 17 16 50 50 H 1.09005 * 109.47206 * 60.00106 * 18 17 16 51 51 H 0.97000 * 119.99557 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2632 0.7213 7 6 3.1415 0.9236 2.1734 8 8 2.0185 0.7336 2.5902 9 7 4.1950 0.8310 3.0089 10 6 5.6102 1.0351 2.6406 11 6 6.3123 1.4304 3.9646 12 6 5.5608 0.5441 4.9953 13 6 4.1294 0.5101 4.4389 14 6 3.2406 1.5178 5.1896 15 6 2.5842 0.6156 6.2604 16 7 2.6163 -0.7425 5.7027 17 6 1.8037 -1.8579 6.1945 18 6 2.5683 -2.6011 7.2917 19 6 1.7322 -3.7480 7.7980 20 1 0.7534 -3.9291 7.3788 21 6 2.2171 -4.5670 8.7957 22 7 3.4091 -4.3468 9.3058 23 14 1.1808 -5.9891 9.4227 24 1 0.8899 -6.9207 8.3036 25 1 1.9229 -6.7103 10.4878 26 1 -0.0943 -5.4662 9.9758 27 6 3.4891 -0.8304 4.6810 28 8 3.7241 -1.8391 4.0500 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.6615 2.7669 -1.4425 33 1 2.8831 1.0773 -1.9562 34 1 1.2570 1.8014 -1.9564 35 1 3.8427 2.2369 0.6444 36 1 3.9931 0.5051 0.2618 37 1 5.6998 1.8384 1.9093 38 1 6.0364 0.1127 2.2461 39 1 6.1685 2.4889 4.1817 40 1 7.3726 1.1802 3.9341 41 1 5.9871 -0.4587 5.0260 42 1 5.5803 1.0010 5.9847 43 1 3.8421 2.2998 5.6529 44 1 2.4895 1.9463 4.5260 45 1 1.5545 0.9269 6.4361 46 1 3.1533 0.6554 7.1892 47 1 0.8675 -1.4742 6.6002 48 1 1.5905 -2.5419 5.3731 49 1 3.5045 -2.9847 6.8861 50 1 2.7815 -1.9170 8.1131 51 1 3.7501 -4.9227 10.0079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271197971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:45 Heat of formation + Delta-G solvation = -112.944089 kcal Electronic energy + Delta-G solvation = -31382.835980 eV Core-core repulsion = 27282.287577 eV Total energy + Delta-G solvation = -4100.548403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22047 -39.25343 -37.93766 -36.96347 -35.83392 -33.67665 -33.04304 -31.90736 -31.58613 -29.12994 -28.24188 -27.69442 -26.56710 -25.08834 -24.15311 -22.81832 -21.98467 -21.55603 -20.62080 -19.59098 -18.33261 -17.20645 -16.98188 -16.55992 -16.41593 -15.79475 -15.44009 -15.17529 -15.14821 -14.84266 -14.65915 -14.37985 -13.85516 -13.67742 -13.48137 -13.16603 -13.11568 -12.84247 -12.74731 -12.64173 -12.47846 -12.43296 -12.21924 -12.14670 -11.86619 -11.65809 -11.56435 -11.39959 -11.35039 -11.24621 -10.88541 -10.87860 -10.74071 -10.63833 -9.94469 -9.80370 -9.74057 -9.62957 -9.53638 -9.17086 -8.44704 -8.32507 -7.89531 -5.98373 -4.01202 2.56394 2.75337 3.26559 3.36297 3.39800 3.42993 3.66993 3.69730 4.22356 4.34329 4.48867 4.49450 4.55284 4.59172 4.79241 4.82443 4.92236 5.03678 5.09360 5.10932 5.19715 5.23653 5.30997 5.34053 5.37723 5.43227 5.45079 5.47837 5.59714 5.61421 5.69816 5.75118 5.76117 5.80844 5.85634 5.89043 5.98593 6.04157 6.16380 6.35216 6.58870 6.88616 7.10671 7.16530 7.46057 7.59195 7.72584 7.93472 8.02205 8.19888 8.39388 8.78928 9.05288 9.62329 11.13155 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003147 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.985588 B = 8894.749506 C =10244.180231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.374 6.374 3 C 0.100 3.900 4 H 0.067 0.933 5 C -0.174 4.174 6 C -0.134 4.134 7 C 0.532 3.468 8 O -0.519 6.519 9 N -0.600 5.600 10 C 0.099 3.901 11 C -0.128 4.128 12 C -0.114 4.114 13 C 0.133 3.867 14 C -0.134 4.134 15 C 0.107 3.893 16 N -0.604 5.604 17 C 0.131 3.869 18 C 0.013 3.987 19 C -0.521 4.521 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.522 3.478 28 O -0.524 6.524 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.020 0.980 50 H 0.017 0.983 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 20.677 -17.198 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.292 6.292 3 C 0.041 3.959 4 H 0.085 0.915 5 C -0.232 4.232 6 C -0.173 4.173 7 C 0.321 3.679 8 O -0.394 6.394 9 N -0.336 5.336 10 C -0.024 4.024 11 C -0.166 4.166 12 C -0.152 4.152 13 C 0.044 3.956 14 C -0.173 4.173 15 C -0.018 4.018 16 N -0.337 5.337 17 C 0.011 3.989 18 C -0.025 4.025 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.202 1.202 27 C 0.306 3.694 28 O -0.400 6.400 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.038 0.962 50 H 0.035 0.965 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.718 19.728 -17.217 26.447 hybrid contribution -0.643 -0.657 0.495 1.045 sum 3.075 19.071 -16.722 25.550 Atomic orbital electron populations 1.22693 0.80949 1.02641 0.99473 1.87941 1.19850 1.26573 1.94880 1.21772 0.93471 0.86156 0.94502 0.91464 1.22298 1.02624 1.01485 0.96756 1.21821 0.99277 1.04076 0.92169 1.20209 0.83608 0.76773 0.87323 1.90727 1.22633 1.48737 1.77275 1.48309 1.06957 1.70221 1.08065 1.22435 0.80840 1.01284 0.97807 1.22805 0.99904 1.00144 0.93756 1.22535 0.91244 1.02086 0.99368 1.21205 0.97335 0.94779 0.82284 1.22919 0.99420 0.97177 0.97791 1.22007 1.01686 0.81832 0.96231 1.48406 1.41268 1.10950 1.33056 1.21783 0.92922 0.85824 0.98382 1.19399 0.96095 0.94684 0.92279 1.21072 1.02584 1.12705 1.19648 0.92541 1.24996 0.95056 0.97714 0.96486 1.69966 1.17082 1.38977 1.27271 0.86610 0.80217 0.82420 0.78486 1.20137 1.21266 1.20193 1.20304 0.79687 0.89285 0.80129 1.90678 1.63850 1.34535 1.50915 0.93562 0.94812 0.89917 0.91591 0.91627 0.92152 0.87889 0.88004 0.90319 0.90816 0.90274 0.89329 0.89560 0.88923 0.89391 0.89239 0.90574 0.91009 0.91696 0.91309 0.96170 0.96464 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.82 101.05 1.09 1.55 16 2 O -0.37 -5.29 9.58 -49.66 -0.48 -5.76 16 3 C 0.10 1.06 2.27 -26.73 -0.06 1.00 16 4 H 0.07 0.73 7.60 -51.93 -0.39 0.34 16 5 C -0.17 -1.30 9.53 37.16 0.35 -0.95 16 6 C -0.13 -1.34 4.43 -27.88 -0.12 -1.46 16 7 C 0.53 7.65 7.17 -10.99 -0.08 7.57 16 8 O -0.52 -9.45 13.88 -8.87 -0.12 -9.57 16 9 N -0.60 -7.94 2.92 -157.04 -0.46 -8.40 16 10 C 0.10 0.89 6.72 -2.36 -0.02 0.87 16 11 C -0.13 -0.99 7.09 -24.45 -0.17 -1.16 16 12 C -0.11 -1.34 5.95 -25.18 -0.15 -1.49 16 13 C 0.13 1.97 0.73 -132.15 -0.10 1.87 16 14 C -0.13 -1.72 6.06 -25.39 -0.15 -1.87 16 15 C 0.11 1.63 7.36 -2.99 -0.02 1.60 16 16 N -0.60 -12.30 2.94 -172.50 -0.51 -12.81 16 17 C 0.13 3.05 5.88 -4.04 -0.02 3.03 16 18 C 0.01 0.37 5.30 -27.89 -0.15 0.22 16 19 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.74 5.46 -17.81 -0.10 1.65 16 22 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 23 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 27 C 0.52 10.86 6.11 -11.12 -0.07 10.80 16 28 O -0.52 -13.22 17.62 5.56 0.10 -13.12 16 29 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.03 0.31 7.87 -51.93 -0.41 -0.10 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 35 H 0.10 0.65 7.86 -51.93 -0.41 0.24 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.45 7.51 -51.93 -0.39 0.06 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.20 7.91 -51.93 -0.41 0.79 16 42 H 0.09 0.94 7.63 -51.93 -0.40 0.54 16 43 H 0.09 0.82 7.68 -51.93 -0.40 0.42 16 44 H 0.09 1.24 6.56 -51.93 -0.34 0.89 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 47 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.07 1.73 7.94 -51.93 -0.41 1.32 16 49 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 409.33 15.07 6.17 6.17 Total: -1.00 -38.96 409.33 -8.66 -47.63 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -9.00 Total: -2.17 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.08 Total: 7.59 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.23 Total: -48.01 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.50 Total: -28.46 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -38.96 -8.66 -47.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271197971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.318 kcal (2) G-P(sol) polarization free energy of solvation -38.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds