Wall clock time and date at job start Tue Mar 31 2020 21:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00029 * 2 1 4 4 H 1.09001 * 109.47017 * 29.99964 * 3 2 1 5 5 C 1.52996 * 109.46933 * 269.99646 * 3 2 1 6 6 C 1.53005 * 109.46864 * 149.99806 * 3 2 1 7 7 C 1.50702 * 109.47035 * 294.99697 * 6 3 2 8 8 O 1.21282 * 119.99969 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00210 * 180.02562 * 7 6 3 10 10 C 1.47654 * 125.80916 * 359.96694 * 9 7 6 11 11 C 1.54984 * 104.85408 * 156.00511 * 10 9 7 12 12 C 1.55327 * 101.66444 * 36.60584 * 11 10 9 13 13 C 1.46705 * 125.75616 * 179.97438 * 9 7 6 14 14 C 1.53915 * 110.97963 * 302.15037 * 13 9 7 15 15 C 1.54638 * 101.58886 * 145.04169 * 14 13 9 16 16 N 1.46848 * 105.50540 * 335.21867 * 15 14 13 17 17 C 1.46498 * 124.36735 * 196.87691 * 16 15 14 18 18 C 1.52999 * 109.46935 * 270.02136 * 17 16 15 19 19 C 1.50696 * 109.47166 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00363 * 0.02562 * 19 18 17 21 21 C 1.37888 * 120.00131 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99582 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99809 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47167 * 60.00298 * 23 21 19 25 25 H 1.48504 * 109.46747 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46998 * 299.99944 * 23 21 19 27 27 C 1.34662 * 111.26562 * 16.87118 * 16 15 14 28 28 O 1.21275 * 125.07398 * 179.17609 * 27 16 15 29 29 H 1.08996 * 109.47333 * 300.00912 * 1 2 3 30 30 H 1.09007 * 109.46723 * 59.99899 * 1 2 3 31 31 H 1.09000 * 109.47648 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47269 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.46828 * 299.99857 * 5 3 2 34 34 H 1.09001 * 109.47511 * 60.00134 * 5 3 2 35 35 H 1.09000 * 109.46720 * 175.00183 * 6 3 2 36 36 H 1.08995 * 109.47042 * 55.00011 * 6 3 2 37 37 H 1.09005 * 110.36331 * 37.16491 * 10 9 7 38 38 H 1.08996 * 110.36957 * 274.85213 * 10 9 7 39 39 H 1.09006 * 110.98514 * 278.51799 * 11 10 9 40 40 H 1.08992 * 110.99345 * 154.70217 * 11 10 9 41 41 H 1.09002 * 110.76074 * 83.40966 * 12 11 10 42 42 H 1.08997 * 110.76519 * 206.60967 * 12 11 10 43 43 H 1.08996 * 110.99928 * 263.12252 * 14 13 9 44 44 H 1.09000 * 110.99782 * 26.96458 * 14 13 9 45 45 H 1.08997 * 110.24047 * 216.20623 * 15 14 13 46 46 H 1.09007 * 110.30974 * 94.26380 * 15 14 13 47 47 H 1.09004 * 109.47419 * 30.01707 * 17 16 15 48 48 H 1.08997 * 109.47338 * 150.02337 * 17 16 15 49 49 H 1.09002 * 109.47179 * 300.00224 * 18 17 16 50 50 H 1.09005 * 109.47206 * 60.00106 * 18 17 16 51 51 H 0.97000 * 119.99557 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2632 0.7213 7 6 3.1415 0.9236 2.1734 8 8 2.0185 0.7336 2.5902 9 7 4.1950 0.8310 3.0089 10 6 5.6102 1.0351 2.6406 11 6 6.3123 1.4304 3.9646 12 6 5.5608 0.5441 4.9953 13 6 4.1294 0.5101 4.4389 14 6 3.2406 1.5178 5.1896 15 6 2.5842 0.6156 6.2604 16 7 2.6163 -0.7425 5.7027 17 6 1.8037 -1.8579 6.1945 18 6 2.5683 -2.6011 7.2917 19 6 1.7322 -3.7480 7.7980 20 1 0.7534 -3.9291 7.3788 21 6 2.2171 -4.5670 8.7957 22 7 3.4091 -4.3468 9.3058 23 14 1.1808 -5.9891 9.4227 24 1 0.8899 -6.9207 8.3036 25 1 1.9229 -6.7103 10.4878 26 1 -0.0943 -5.4662 9.9758 27 6 3.4891 -0.8304 4.6810 28 8 3.7241 -1.8391 4.0500 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.6615 2.7669 -1.4425 33 1 2.8831 1.0773 -1.9562 34 1 1.2570 1.8014 -1.9564 35 1 3.8427 2.2369 0.6444 36 1 3.9931 0.5051 0.2618 37 1 5.6998 1.8384 1.9093 38 1 6.0364 0.1127 2.2461 39 1 6.1685 2.4889 4.1817 40 1 7.3726 1.1802 3.9341 41 1 5.9871 -0.4587 5.0260 42 1 5.5803 1.0010 5.9847 43 1 3.8421 2.2998 5.6529 44 1 2.4895 1.9463 4.5260 45 1 1.5545 0.9269 6.4361 46 1 3.1533 0.6554 7.1892 47 1 0.8675 -1.4742 6.6002 48 1 1.5905 -2.5419 5.3731 49 1 3.5045 -2.9847 6.8861 50 1 2.7815 -1.9170 8.1131 51 1 3.7501 -4.9227 10.0079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271197971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:44 Heat of formation + Delta-G solvation = -140.333069 kcal Electronic energy + Delta-G solvation = -31384.023655 eV Core-core repulsion = 27282.287577 eV Total energy + Delta-G solvation = -4101.736079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42849 -40.41833 -39.01205 -38.07386 -37.48859 -35.65425 -34.10602 -33.44970 -32.57941 -30.80309 -29.23737 -28.68319 -27.50467 -27.02207 -25.32734 -23.83978 -23.59932 -22.61891 -21.68560 -20.98457 -19.62976 -18.73205 -18.26017 -17.86019 -17.56357 -17.01565 -16.92646 -16.63429 -16.30089 -16.13336 -15.88691 -15.72485 -15.21954 -14.86713 -14.61884 -14.53763 -14.37633 -14.23769 -13.92408 -13.81386 -13.63675 -13.45854 -13.31998 -13.17320 -12.99090 -12.93196 -12.88634 -12.69033 -12.58612 -12.40911 -12.35489 -12.10988 -12.04812 -11.88685 -11.66797 -11.58004 -11.48237 -10.95685 -10.82829 -10.63555 -10.54696 -9.65088 -9.59717 -8.27652 -6.40914 1.35402 1.36129 1.40248 1.47873 1.65291 1.94784 2.18216 2.38812 2.87586 3.05135 3.22247 3.36622 3.50652 3.67405 3.77950 3.82401 3.97831 4.12109 4.17166 4.18434 4.22337 4.34846 4.40144 4.48042 4.49959 4.55569 4.57036 4.60042 4.67677 4.72141 4.75914 4.76169 4.78626 4.84949 4.87622 4.91265 4.97337 5.02871 5.12779 5.24478 5.27843 5.31635 5.37037 5.39910 5.53925 5.75678 6.10530 6.22707 6.30674 6.50842 6.72413 7.13789 7.18934 7.28450 8.84505 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003147 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.985588 B = 8894.749506 C =10244.180231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.410 6.410 3 C 0.091 3.909 4 H 0.060 0.940 5 C -0.164 4.164 6 C -0.126 4.126 7 C 0.518 3.482 8 O -0.569 6.569 9 N -0.603 5.603 10 C 0.089 3.911 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.135 3.865 14 C -0.115 4.115 15 C 0.096 3.904 16 N -0.616 5.616 17 C 0.145 3.855 18 C 0.031 3.969 19 C -0.551 4.551 20 H 0.061 0.939 21 C 0.003 3.997 22 N -0.929 5.929 23 Si 0.972 3.028 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.260 1.260 27 C 0.501 3.499 28 O -0.588 6.588 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.113 0.887 43 H 0.137 0.863 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.038 0.962 49 H -0.027 1.027 50 H 0.006 0.994 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 23.763 -17.748 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.330 6.330 3 C 0.033 3.967 4 H 0.078 0.922 5 C -0.222 4.222 6 C -0.165 4.165 7 C 0.309 3.691 8 O -0.448 6.448 9 N -0.337 5.337 10 C -0.032 4.032 11 C -0.147 4.147 12 C -0.157 4.157 13 C 0.045 3.955 14 C -0.153 4.153 15 C -0.026 4.026 16 N -0.347 5.347 17 C 0.023 3.977 18 C -0.007 4.007 19 C -0.590 4.590 20 H 0.080 0.920 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.795 3.205 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.184 1.184 27 C 0.288 3.712 28 O -0.468 6.468 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.155 0.845 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.057 0.943 49 H -0.009 1.009 50 H 0.025 0.975 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.569 22.880 -17.769 29.328 hybrid contribution -0.875 -1.658 0.681 1.995 sum 3.694 21.222 -17.088 27.496 Atomic orbital electron populations 1.22699 0.80450 1.02498 1.00025 1.87885 1.20739 1.29172 1.95185 1.22054 0.93449 0.84601 0.96629 0.92194 1.22230 1.02960 1.02827 0.94146 1.21942 0.99338 1.06552 0.88661 1.21126 0.83140 0.75863 0.89000 1.90699 1.24727 1.50968 1.78389 1.48553 1.08699 1.69156 1.07272 1.22795 0.78250 1.02380 0.99752 1.22866 1.00241 1.00828 0.90811 1.22618 0.89612 1.01603 1.01820 1.21252 0.98835 0.91084 0.84344 1.22927 0.99053 0.96931 0.96410 1.22384 1.03219 0.79494 0.97535 1.48574 1.40694 1.12153 1.33310 1.21321 0.93705 0.86674 0.96017 1.19150 0.94313 0.94535 0.92712 1.21491 1.03203 1.13869 1.20405 0.92030 1.26013 0.96386 1.00694 0.96416 1.70098 1.18814 1.40265 1.27699 0.85412 0.78816 0.78327 0.77960 1.19730 1.20242 1.18396 1.21641 0.79235 0.91189 0.79139 1.90610 1.65829 1.37472 1.52910 0.95125 0.92004 0.90544 0.88724 0.91683 0.92087 0.83134 0.87735 0.85807 0.92187 0.87037 0.87221 0.93037 0.86847 0.84526 0.90072 0.89394 0.89683 0.89634 0.94318 1.00864 0.97532 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.82 113.37 1.23 2.20 16 2 O -0.41 -11.93 9.58 -135.19 -1.29 -13.22 16 3 C 0.09 1.83 2.27 30.59 0.07 1.90 16 4 H 0.06 1.27 7.60 -2.39 -0.02 1.26 16 5 C -0.16 -2.04 9.53 71.98 0.69 -1.36 16 6 C -0.13 -2.26 4.43 29.85 0.13 -2.12 16 7 C 0.52 14.64 7.17 87.66 0.63 15.27 16 8 O -0.57 -21.43 13.88 10.76 0.15 -21.28 16 9 N -0.60 -15.21 2.92 -769.14 -2.25 -17.45 16 10 C 0.09 1.33 6.72 86.84 0.58 1.91 16 11 C -0.11 -1.25 7.09 32.07 0.23 -1.02 16 12 C -0.12 -2.61 5.95 31.60 0.19 -2.42 16 13 C 0.13 3.92 0.73 3.28 0.00 3.92 16 14 C -0.12 -2.71 6.06 31.46 0.19 -2.52 16 15 C 0.10 2.89 7.36 86.87 0.64 3.53 16 16 N -0.62 -26.40 2.94 -818.13 -2.41 -28.80 16 17 C 0.14 7.20 5.88 86.38 0.51 7.70 16 18 C 0.03 1.80 5.30 29.85 0.16 1.96 16 19 C -0.55 -33.67 9.11 25.60 0.23 -33.44 16 20 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 21 C 0.00 0.20 5.46 84.66 0.46 0.67 16 22 N -0.93 -58.75 13.29 21.45 0.28 -58.47 16 23 Si 0.97 46.23 29.54 68.60 2.03 48.25 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 27 C 0.50 22.13 6.11 87.62 0.54 22.67 16 28 O -0.59 -32.32 17.62 -3.01 -0.05 -32.37 16 29 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.06 1.12 7.87 -2.38 -0.02 1.10 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.06 0.75 7.87 -2.39 -0.02 0.74 16 35 H 0.15 1.18 7.86 -2.39 -0.02 1.16 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.12 0.75 7.51 -2.38 -0.02 0.73 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 1.49 7.91 -2.39 -0.02 1.47 16 42 H 0.11 1.99 7.63 -2.39 -0.02 1.97 16 43 H 0.14 1.91 7.68 -2.39 -0.02 1.89 16 44 H 0.08 2.11 6.56 -2.39 -0.02 2.09 16 45 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.09 3.83 8.14 -2.38 -0.02 3.81 16 48 H 0.04 2.12 7.94 -2.39 -0.02 2.10 16 49 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 50 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 51 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -94.69 409.33 3.82 -90.87 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.89 Total: 13.62 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.47 Total: 18.86 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.37 Total: -104.73 kcal Atomic # 8 Polarization: -65.67 SS G_CDS: -1.20 Total: -66.87 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -94.69 3.82 -90.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271197971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.466 kcal (2) G-P(sol) polarization free energy of solvation -94.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds