Wall clock time and date at job start Tue Mar 31 2020 21:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00539 * 2 1 4 4 H 1.09000 * 109.46689 * 29.99291 * 3 2 1 5 5 C 1.53005 * 109.46807 * 269.99804 * 3 2 1 6 6 C 1.52995 * 109.47415 * 149.99818 * 3 2 1 7 7 C 1.50699 * 109.47092 * 294.99512 * 6 3 2 8 8 O 1.21282 * 119.99887 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99880 * 179.97438 * 7 6 3 10 10 C 1.47652 * 125.81612 * 0.02562 * 9 7 6 11 11 C 1.54973 * 104.85918 * 156.00256 * 10 9 7 12 12 C 1.55332 * 101.66364 * 36.60295 * 11 10 9 13 13 C 1.46230 * 125.80895 * 180.02562 * 9 7 6 14 14 C 1.53880 * 110.92173 * 60.14482 * 13 9 7 15 15 C 1.54821 * 101.51612 * 215.01082 * 14 13 9 16 16 N 1.46855 * 105.40875 * 25.12821 * 15 14 13 17 17 C 1.46499 * 124.36643 * 163.00582 * 16 15 14 18 18 C 1.53004 * 109.47198 * 269.72692 * 17 16 15 19 19 C 1.50701 * 109.47211 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27574 * 19 18 17 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.34649 * 111.26422 * 342.73844 * 16 15 14 28 28 O 1.21281 * 125.06969 * 181.10990 * 27 16 15 29 29 H 1.09000 * 109.46676 * 60.00506 * 1 2 3 30 30 H 1.08995 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47075 * 300.00425 * 1 2 3 32 32 H 1.08999 * 109.47050 * 300.00213 * 5 3 2 33 33 H 1.09007 * 109.47278 * 59.99567 * 5 3 2 34 34 H 1.08993 * 109.47239 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47020 * 174.99650 * 6 3 2 36 36 H 1.08996 * 109.47156 * 55.00195 * 6 3 2 37 37 H 1.08996 * 110.35874 * 37.15648 * 10 9 7 38 38 H 1.08999 * 110.45164 * 274.89456 * 10 9 7 39 39 H 1.09007 * 110.98988 * 278.51063 * 11 10 9 40 40 H 1.08997 * 111.02224 * 154.70699 * 11 10 9 41 41 H 1.09003 * 110.76053 * 206.78932 * 12 11 10 42 42 H 1.08998 * 110.92347 * 83.47792 * 12 11 10 43 43 H 1.09002 * 111.00278 * 333.30389 * 14 13 9 44 44 H 1.09000 * 111.00617 * 97.15236 * 14 13 9 45 45 H 1.08999 * 110.39954 * 266.09205 * 15 14 13 46 46 H 1.09002 * 110.17771 * 144.04353 * 15 14 13 47 47 H 1.09000 * 109.47602 * 149.72242 * 17 16 15 48 48 H 1.09007 * 109.47337 * 29.71956 * 17 16 15 49 49 H 1.09000 * 109.47211 * 59.99311 * 18 17 16 50 50 H 1.09007 * 109.46376 * 299.99853 * 18 17 16 51 51 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3590 1.2632 0.7213 7 6 3.1416 0.9237 2.1733 8 8 2.0186 0.7337 2.5901 9 7 4.1953 0.8302 3.0085 10 6 5.6105 1.0342 2.6403 11 6 6.3128 1.4282 3.9643 12 6 5.5613 0.5413 4.9945 13 6 4.1314 0.5093 4.4338 14 6 3.5002 -0.8761 4.6574 15 6 2.7222 -0.6520 5.9771 16 7 2.4478 0.7898 6.0281 17 6 1.4451 1.4105 6.8974 18 6 0.1054 1.4806 6.1615 19 6 -0.9259 2.1196 7.0555 20 1 -0.6532 2.4430 8.0492 21 6 -2.2190 2.2857 6.6069 22 7 -3.1204 2.8384 7.3891 23 14 -2.6907 1.7259 4.8883 24 1 -3.1526 0.3154 4.9365 25 1 -3.7836 2.5872 4.3697 26 1 -1.5109 1.8301 3.9926 27 6 3.2407 1.4683 5.1772 28 8 3.2377 2.6723 5.0318 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.8830 1.0772 -1.9563 33 1 1.2570 1.8013 -1.9565 34 1 2.6608 2.7671 -1.4427 35 1 3.8428 2.2369 0.6442 36 1 3.9931 0.5050 0.2618 37 1 5.7001 1.8380 1.9096 38 1 6.0375 0.1130 2.2440 39 1 6.1696 2.4866 4.1824 40 1 7.3733 1.1780 3.9340 41 1 5.5783 0.9990 5.9836 42 1 5.9859 -0.4620 5.0274 43 1 2.8260 -1.1346 3.8409 44 1 4.2679 -1.6394 4.7845 45 1 3.3295 -0.9507 6.8315 46 1 1.7880 -1.2133 5.9628 47 1 1.7672 2.4175 7.1624 48 1 1.3311 0.8152 7.8034 49 1 -0.2167 0.4735 5.8965 50 1 0.2194 2.0758 5.2555 51 1 -4.0300 2.9557 7.0734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271197972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:48 Heat of formation + Delta-G solvation = -108.255929 kcal Electronic energy + Delta-G solvation = -32033.391807 eV Core-core repulsion = 27933.046698 eV Total energy + Delta-G solvation = -4100.345109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31034 -39.24437 -37.92407 -36.95605 -35.97691 -33.68740 -32.97642 -31.93017 -31.68165 -29.53450 -28.24070 -27.74803 -26.49421 -25.26232 -24.24270 -22.62466 -21.96761 -21.49189 -20.63683 -19.60941 -18.41851 -17.19941 -16.91920 -16.88128 -16.44944 -15.76028 -15.51511 -15.31267 -15.11622 -14.81028 -14.53976 -14.26350 -13.85521 -13.64421 -13.60185 -13.31537 -13.03462 -12.97980 -12.81985 -12.68163 -12.62199 -12.59802 -12.17620 -12.09924 -12.04497 -11.76610 -11.56400 -11.41445 -11.39651 -11.33668 -10.92938 -10.80445 -10.76336 -10.37409 -9.94084 -9.81823 -9.70407 -9.59997 -9.55635 -9.18111 -8.49441 -8.46811 -8.06552 -5.99908 -3.98025 2.57122 2.75716 3.17134 3.37627 3.44113 3.54579 3.58737 3.74707 4.17999 4.26615 4.40171 4.53632 4.59251 4.63129 4.73574 4.77485 4.98663 5.02786 5.05791 5.11154 5.25423 5.29754 5.33557 5.35312 5.36600 5.40164 5.43457 5.53402 5.54144 5.58233 5.62664 5.71888 5.79624 5.82234 5.86526 5.92307 5.95385 5.98829 6.06000 6.33239 6.39015 6.69480 6.91698 7.19953 7.28354 7.46233 7.50711 7.71993 7.84014 8.26112 8.54164 8.65337 9.03058 9.63398 11.13064 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008776 B = 0.005175 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.615744 B = 5409.696405 C = 7767.150445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.378 6.378 3 C 0.097 3.903 4 H 0.070 0.930 5 C -0.173 4.173 6 C -0.130 4.130 7 C 0.528 3.472 8 O -0.506 6.506 9 N -0.603 5.603 10 C 0.102 3.898 11 C -0.132 4.132 12 C -0.109 4.109 13 C 0.132 3.868 14 C -0.136 4.136 15 C 0.105 3.895 16 N -0.608 5.608 17 C 0.139 3.861 18 C -0.021 4.021 19 C -0.519 4.519 20 H 0.073 0.927 21 C 0.071 3.929 22 N -0.903 5.903 23 Si 0.875 3.125 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.261 1.261 27 C 0.522 3.478 28 O -0.525 6.525 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.012 0.988 50 H 0.022 0.978 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.684 -8.612 -14.551 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.296 6.296 3 C 0.038 3.962 4 H 0.088 0.912 5 C -0.230 4.230 6 C -0.170 4.170 7 C 0.317 3.683 8 O -0.379 6.379 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.170 4.170 12 C -0.148 4.148 13 C 0.042 3.958 14 C -0.175 4.175 15 C -0.019 4.019 16 N -0.341 5.341 17 C 0.019 3.981 18 C -0.060 4.060 19 C -0.557 4.557 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.542 5.542 23 Si 0.702 3.298 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.185 1.185 27 C 0.307 3.693 28 O -0.401 6.401 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.030 0.970 50 H 0.040 0.960 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.819 -8.136 -14.405 26.592 hybrid contribution -0.695 -0.083 -0.849 1.101 sum 20.124 -8.219 -15.254 26.556 Atomic orbital electron populations 1.22721 0.80780 1.02488 1.00041 1.87834 1.19981 1.26840 1.94993 1.21804 0.93597 0.86161 0.94617 0.91159 1.22280 1.02601 1.01515 0.96611 1.21791 0.99144 1.04115 0.91972 1.20279 0.83584 0.76946 0.87533 1.90817 1.22244 1.47702 1.77170 1.48202 1.06933 1.71266 1.07480 1.22376 0.80813 1.00970 0.97915 1.22841 0.99358 1.01152 0.93668 1.22512 0.91145 1.01413 0.99687 1.21114 0.96760 0.95211 0.82670 1.22988 1.00361 0.95374 0.98769 1.22068 1.00521 0.82580 0.96755 1.48480 1.37138 1.07244 1.41229 1.21570 0.87612 0.97386 0.91572 1.19849 0.92248 0.96829 0.97033 1.20987 0.93318 1.39719 1.01711 0.90865 1.24935 0.96369 0.94538 0.97167 1.69913 1.03324 1.44445 1.36535 0.86827 0.78529 0.78621 0.85840 1.20321 1.21411 1.18513 1.20363 0.80859 0.88075 0.80052 1.90668 1.69473 1.13737 1.66177 0.94655 0.89980 0.93228 0.91766 0.92117 0.91506 0.87815 0.88196 0.90437 0.91008 0.89892 0.89461 0.89697 0.89357 0.88951 0.89371 0.91261 0.90115 0.90707 0.91062 0.96970 0.95980 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.82 101.05 1.09 1.58 16 2 O -0.38 -5.48 9.58 -49.66 -0.48 -5.96 16 3 C 0.10 1.22 2.27 -26.73 -0.06 1.16 16 4 H 0.07 1.05 7.60 -51.93 -0.39 0.65 16 5 C -0.17 -1.58 9.53 37.16 0.35 -1.22 16 6 C -0.13 -1.46 4.43 -27.89 -0.12 -1.58 16 7 C 0.53 8.21 7.14 -10.99 -0.08 8.13 16 8 O -0.51 -10.37 13.94 -8.87 -0.12 -10.50 16 9 N -0.60 -7.98 2.90 -157.39 -0.46 -8.44 16 10 C 0.10 0.85 6.71 -2.37 -0.02 0.84 16 11 C -0.13 -1.06 7.09 -24.45 -0.17 -1.24 16 12 C -0.11 -1.05 6.08 -25.17 -0.15 -1.20 16 13 C 0.13 1.83 0.72 -132.42 -0.10 1.74 16 14 C -0.14 -1.72 6.20 -25.31 -0.16 -1.88 16 15 C 0.10 1.49 7.37 -2.89 -0.02 1.47 16 16 N -0.61 -11.58 2.94 -172.38 -0.51 -12.09 16 17 C 0.14 3.06 5.88 -4.04 -0.02 3.03 16 18 C -0.02 -0.57 4.37 -27.88 -0.12 -0.69 16 19 C -0.52 -15.66 9.66 -34.44 -0.33 -15.99 16 20 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 21 C 0.07 2.20 5.47 -17.82 -0.10 2.10 16 22 N -0.90 -28.95 13.96 55.43 0.77 -28.18 16 23 Si 0.87 23.62 27.46 -169.99 -4.67 18.95 16 24 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.26 -7.21 6.55 56.52 0.37 -6.84 16 27 C 0.52 10.11 5.89 -11.13 -0.07 10.05 16 28 O -0.52 -12.26 17.60 5.56 0.10 -12.16 16 29 H 0.03 0.40 7.87 -51.93 -0.41 -0.01 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.92 7.86 -51.93 -0.41 0.51 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.54 7.51 -51.93 -0.39 0.15 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.87 7.82 -51.93 -0.41 0.47 16 42 H 0.09 0.60 7.44 -51.93 -0.39 0.21 16 43 H 0.09 1.40 6.74 -51.93 -0.35 1.05 16 44 H 0.09 0.78 7.44 -51.93 -0.39 0.39 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.07 1.74 7.93 -51.93 -0.41 1.33 16 48 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.01 0.32 7.56 -51.93 -0.39 -0.07 16 50 H 0.02 0.65 7.21 -51.93 -0.37 0.27 16 51 H 0.26 7.88 8.31 -40.82 -0.34 7.55 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -39.93 405.43 -8.27 -48.20 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.95 Total: -2.22 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.07 Total: 6.29 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.19 Total: -48.71 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.50 Total: -28.62 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.67 Total: 18.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -39.93 -8.27 -48.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271197972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.056 kcal (2) G-P(sol) polarization free energy of solvation -39.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds