Wall clock time and date at job start Tue Mar 31 2020 21:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00539 * 2 1 4 4 H 1.09000 * 109.46689 * 29.99291 * 3 2 1 5 5 C 1.53005 * 109.46807 * 269.99804 * 3 2 1 6 6 C 1.52995 * 109.47415 * 149.99818 * 3 2 1 7 7 C 1.50699 * 109.47092 * 294.99512 * 6 3 2 8 8 O 1.21282 * 119.99887 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99880 * 179.97438 * 7 6 3 10 10 C 1.47652 * 125.81612 * 0.02562 * 9 7 6 11 11 C 1.54973 * 104.85918 * 156.00256 * 10 9 7 12 12 C 1.55332 * 101.66364 * 36.60295 * 11 10 9 13 13 C 1.46230 * 125.80895 * 180.02562 * 9 7 6 14 14 C 1.53880 * 110.92173 * 60.14482 * 13 9 7 15 15 C 1.54821 * 101.51612 * 215.01082 * 14 13 9 16 16 N 1.46855 * 105.40875 * 25.12821 * 15 14 13 17 17 C 1.46499 * 124.36643 * 163.00582 * 16 15 14 18 18 C 1.53004 * 109.47198 * 269.72692 * 17 16 15 19 19 C 1.50701 * 109.47211 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27574 * 19 18 17 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.34649 * 111.26422 * 342.73844 * 16 15 14 28 28 O 1.21281 * 125.06969 * 181.10990 * 27 16 15 29 29 H 1.09000 * 109.46676 * 60.00506 * 1 2 3 30 30 H 1.08995 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47075 * 300.00425 * 1 2 3 32 32 H 1.08999 * 109.47050 * 300.00213 * 5 3 2 33 33 H 1.09007 * 109.47278 * 59.99567 * 5 3 2 34 34 H 1.08993 * 109.47239 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47020 * 174.99650 * 6 3 2 36 36 H 1.08996 * 109.47156 * 55.00195 * 6 3 2 37 37 H 1.08996 * 110.35874 * 37.15648 * 10 9 7 38 38 H 1.08999 * 110.45164 * 274.89456 * 10 9 7 39 39 H 1.09007 * 110.98988 * 278.51063 * 11 10 9 40 40 H 1.08997 * 111.02224 * 154.70699 * 11 10 9 41 41 H 1.09003 * 110.76053 * 206.78932 * 12 11 10 42 42 H 1.08998 * 110.92347 * 83.47792 * 12 11 10 43 43 H 1.09002 * 111.00278 * 333.30389 * 14 13 9 44 44 H 1.09000 * 111.00617 * 97.15236 * 14 13 9 45 45 H 1.08999 * 110.39954 * 266.09205 * 15 14 13 46 46 H 1.09002 * 110.17771 * 144.04353 * 15 14 13 47 47 H 1.09000 * 109.47602 * 149.72242 * 17 16 15 48 48 H 1.09007 * 109.47337 * 29.71956 * 17 16 15 49 49 H 1.09000 * 109.47211 * 59.99311 * 18 17 16 50 50 H 1.09007 * 109.46376 * 299.99853 * 18 17 16 51 51 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3590 1.2632 0.7213 7 6 3.1416 0.9237 2.1733 8 8 2.0186 0.7337 2.5901 9 7 4.1953 0.8302 3.0085 10 6 5.6105 1.0342 2.6403 11 6 6.3128 1.4282 3.9643 12 6 5.5613 0.5413 4.9945 13 6 4.1314 0.5093 4.4338 14 6 3.5002 -0.8761 4.6574 15 6 2.7222 -0.6520 5.9771 16 7 2.4478 0.7898 6.0281 17 6 1.4451 1.4105 6.8974 18 6 0.1054 1.4806 6.1615 19 6 -0.9259 2.1196 7.0555 20 1 -0.6532 2.4430 8.0492 21 6 -2.2190 2.2857 6.6069 22 7 -3.1204 2.8384 7.3891 23 14 -2.6907 1.7259 4.8883 24 1 -3.1526 0.3154 4.9365 25 1 -3.7836 2.5872 4.3697 26 1 -1.5109 1.8301 3.9926 27 6 3.2407 1.4683 5.1772 28 8 3.2377 2.6723 5.0318 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.8830 1.0772 -1.9563 33 1 1.2570 1.8013 -1.9565 34 1 2.6608 2.7671 -1.4427 35 1 3.8428 2.2369 0.6442 36 1 3.9931 0.5050 0.2618 37 1 5.7001 1.8380 1.9096 38 1 6.0375 0.1130 2.2440 39 1 6.1696 2.4866 4.1824 40 1 7.3733 1.1780 3.9340 41 1 5.5783 0.9990 5.9836 42 1 5.9859 -0.4620 5.0274 43 1 2.8260 -1.1346 3.8409 44 1 4.2679 -1.6394 4.7845 45 1 3.3295 -0.9507 6.8315 46 1 1.7880 -1.2133 5.9628 47 1 1.7672 2.4175 7.1624 48 1 1.3311 0.8152 7.8034 49 1 -0.2167 0.4735 5.8965 50 1 0.2194 2.0758 5.2555 51 1 -4.0300 2.9557 7.0734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271197972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:47 Heat of formation + Delta-G solvation = -137.326072 kcal Electronic energy + Delta-G solvation = -32034.652383 eV Core-core repulsion = 27933.046698 eV Total energy + Delta-G solvation = -4101.605685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45569 -40.44276 -39.02669 -38.07285 -37.51396 -35.66014 -34.16954 -33.61760 -32.60017 -31.21101 -29.23013 -28.68923 -27.56124 -27.12535 -25.30731 -23.63264 -23.34070 -22.69700 -21.91864 -20.95809 -19.65134 -19.16313 -18.25785 -17.92641 -17.51154 -17.20784 -16.76358 -16.49662 -16.37302 -16.20764 -15.92661 -15.59941 -15.23424 -15.00030 -14.86019 -14.68494 -14.45260 -14.42701 -13.97464 -13.83010 -13.78539 -13.52168 -13.50523 -13.20408 -13.08002 -12.95267 -12.93677 -12.75483 -12.43817 -12.41171 -12.16889 -12.14085 -12.06686 -11.92207 -11.75313 -11.64955 -11.61155 -10.95460 -10.90272 -10.85770 -10.61312 -9.65634 -9.60563 -8.44283 -6.47496 1.16496 1.19665 1.34339 1.37307 1.64956 1.99479 2.15658 2.21936 2.76793 2.90080 3.25450 3.36634 3.48546 3.67285 3.74783 3.80396 3.95826 4.10889 4.11941 4.17058 4.23170 4.29562 4.36734 4.40356 4.45292 4.50179 4.55591 4.60019 4.63289 4.70294 4.72123 4.74339 4.80571 4.82299 4.85302 4.93026 4.95528 4.98710 5.06927 5.11797 5.16965 5.23957 5.32595 5.39382 5.40378 5.65772 6.10670 6.17479 6.21205 6.48392 6.57428 7.12701 7.17988 7.20231 8.71906 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008776 B = 0.005175 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.615744 B = 5409.696405 C = 7767.150445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.392 6.392 3 C 0.089 3.911 4 H 0.031 0.969 5 C -0.162 4.162 6 C -0.122 4.122 7 C 0.513 3.487 8 O -0.572 6.572 9 N -0.605 5.605 10 C 0.094 3.906 11 C -0.127 4.127 12 C -0.104 4.104 13 C 0.131 3.869 14 C -0.124 4.124 15 C 0.096 3.904 16 N -0.619 5.619 17 C 0.149 3.851 18 C -0.005 4.005 19 C -0.531 4.531 20 H 0.049 0.951 21 C 0.022 3.978 22 N -0.937 5.937 23 Si 0.938 3.062 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.283 1.283 27 C 0.504 3.496 28 O -0.582 6.582 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.010 0.990 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.053 0.947 40 H 0.130 0.870 41 H 0.073 0.927 42 H 0.133 0.867 43 H 0.062 0.938 44 H 0.142 0.858 45 H 0.112 0.888 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.095 0.905 49 H 0.014 0.986 50 H -0.017 1.017 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.241 -11.198 -16.685 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.311 6.311 3 C 0.031 3.969 4 H 0.049 0.951 5 C -0.219 4.219 6 C -0.161 4.161 7 C 0.303 3.697 8 O -0.450 6.450 9 N -0.339 5.339 10 C -0.026 4.026 11 C -0.165 4.165 12 C -0.142 4.142 13 C 0.042 3.958 14 C -0.162 4.162 15 C -0.026 4.026 16 N -0.351 5.351 17 C 0.027 3.973 18 C -0.044 4.044 19 C -0.569 4.569 20 H 0.067 0.933 21 C -0.176 4.176 22 N -0.577 5.577 23 Si 0.763 3.237 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.208 1.208 27 C 0.291 3.709 28 O -0.462 6.462 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.029 0.971 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.148 0.852 41 H 0.092 0.908 42 H 0.151 0.849 43 H 0.081 0.919 44 H 0.160 0.840 45 H 0.130 0.870 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.113 0.887 49 H 0.032 0.968 50 H 0.001 0.999 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.431 -10.760 -16.536 31.403 hybrid contribution -1.799 0.797 -0.100 1.970 sum 22.633 -9.964 -16.636 29.804 Atomic orbital electron populations 1.22705 0.80823 1.03076 0.99188 1.87786 1.20096 1.28072 1.95147 1.21986 0.93552 0.84690 0.96712 0.95081 1.22206 1.03110 1.02762 0.93864 1.21874 0.98892 1.06367 0.88967 1.21149 0.83190 0.75983 0.89384 1.90791 1.24932 1.50724 1.78576 1.48437 1.08691 1.69917 1.06890 1.22812 0.77771 1.03491 0.98540 1.22881 1.01590 0.99220 0.92821 1.22652 0.88144 1.04212 0.99159 1.21280 0.98135 0.93582 0.82847 1.23025 1.00744 0.95948 0.96495 1.22467 1.01273 0.79252 0.99648 1.48607 1.36115 1.09638 1.40698 1.21151 0.86312 0.97391 0.92457 1.19623 0.94164 0.95462 0.95127 1.21253 0.94447 1.39945 1.01293 0.93290 1.25709 0.96428 0.94633 1.00856 1.70005 1.03994 1.45337 1.38352 0.85850 0.77674 0.79574 0.80645 1.18058 1.19665 1.20818 1.21590 0.81276 0.88268 0.79736 1.90610 1.71396 1.16527 1.67690 0.92419 0.88703 0.97112 0.89970 0.92356 0.89778 0.85353 0.84891 0.89004 0.87138 0.92825 0.85186 0.90803 0.84864 0.91915 0.83992 0.86972 0.91114 0.92959 0.88660 0.96796 0.99852 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.08 10.82 113.37 1.23 2.31 16 2 O -0.39 -11.44 9.58 -135.19 -1.30 -12.73 16 3 C 0.09 2.23 2.27 30.59 0.07 2.30 16 4 H 0.03 1.00 7.60 -2.39 -0.02 0.98 16 5 C -0.16 -2.64 9.53 71.98 0.69 -1.95 16 6 C -0.12 -2.52 4.43 29.85 0.13 -2.39 16 7 C 0.51 15.94 7.14 87.66 0.63 16.56 16 8 O -0.57 -24.83 13.94 10.76 0.15 -24.68 16 9 N -0.61 -14.99 2.90 -770.26 -2.23 -17.23 16 10 C 0.09 1.18 6.71 86.83 0.58 1.76 16 11 C -0.13 -1.56 7.09 32.07 0.23 -1.33 16 12 C -0.10 -1.59 6.08 31.60 0.19 -1.40 16 13 C 0.13 3.43 0.72 3.36 0.00 3.43 16 14 C -0.12 -2.83 6.20 31.51 0.20 -2.64 16 15 C 0.10 2.59 7.37 86.93 0.64 3.23 16 16 N -0.62 -24.18 2.94 -817.73 -2.41 -26.59 16 17 C 0.15 6.89 5.88 86.38 0.51 7.40 16 18 C -0.01 -0.30 4.37 29.85 0.13 -0.17 16 19 C -0.53 -33.62 9.66 25.60 0.25 -33.38 16 20 H 0.05 3.26 7.99 -2.91 -0.02 3.24 16 21 C 0.02 1.42 5.47 84.65 0.46 1.88 16 22 N -0.94 -61.54 13.96 21.45 0.30 -61.24 16 23 Si 0.94 50.76 27.46 68.60 1.88 52.65 16 24 H -0.26 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.27 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.28 -16.25 6.55 99.48 0.65 -15.60 16 27 C 0.50 20.15 5.89 87.62 0.52 20.67 16 28 O -0.58 -29.02 17.60 -3.03 -0.05 -29.07 16 29 H 0.06 1.31 7.87 -2.39 -0.02 1.29 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.01 0.36 8.09 -2.38 -0.02 0.34 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 0.97 7.87 -2.38 -0.02 0.96 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.13 1.98 7.86 -2.39 -0.02 1.96 16 36 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 0.90 7.51 -2.39 -0.02 0.89 16 38 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 39 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 1.33 7.82 -2.39 -0.02 1.32 16 42 H 0.13 0.90 7.44 -2.39 -0.02 0.88 16 43 H 0.06 1.85 6.74 -2.39 -0.02 1.84 16 44 H 0.14 1.70 7.44 -2.39 -0.02 1.68 16 45 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 2.61 7.93 -2.39 -0.02 2.59 16 48 H 0.10 3.89 8.14 -2.38 -0.02 3.87 16 49 H 0.01 0.76 7.56 -2.39 -0.02 0.74 16 50 H -0.02 -1.08 7.21 -2.38 -0.02 -1.10 16 51 H 0.27 16.46 8.31 -92.71 -0.77 15.69 16 Total: -1.00 -97.64 405.43 3.63 -94.01 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.84 Total: 8.58 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.45 Total: 16.30 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -4.34 Total: -105.06 kcal Atomic # 8 Polarization: -65.28 SS G_CDS: -1.20 Total: -66.48 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 1.88 Total: 52.65 kcal Total: -97.64 3.63 -94.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271197972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.317 kcal (2) G-P(sol) polarization free energy of solvation -97.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds