Wall clock time and date at job start Tue Mar 31 2020 21:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00288 * 2 1 4 4 H 1.09000 * 109.46744 * 330.00617 * 3 2 1 5 5 C 1.53000 * 109.47190 * 90.00021 * 3 2 1 6 6 C 1.53002 * 109.47440 * 210.00165 * 3 2 1 7 7 C 1.50707 * 109.46839 * 65.00179 * 6 3 2 8 8 O 1.21283 * 120.00033 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99353 * 180.02562 * 7 6 3 10 10 C 1.47642 * 125.81871 * 359.93937 * 9 7 6 11 11 C 1.54981 * 104.85669 * 156.04345 * 10 9 7 12 12 C 1.55330 * 101.66293 * 36.60895 * 11 10 9 13 13 C 1.46232 * 125.80999 * 179.97438 * 9 7 6 14 14 C 1.53898 * 110.91446 * 60.11119 * 13 9 7 15 15 C 1.54647 * 101.58963 * 215.22023 * 14 13 9 16 16 N 1.46842 * 105.50199 * 24.79336 * 15 14 13 17 17 C 1.46496 * 124.36931 * 163.12368 * 16 15 14 18 18 C 1.53004 * 109.47100 * 89.99720 * 17 16 15 19 19 C 1.50701 * 109.46775 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00381 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99773 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99795 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00144 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46956 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47186 * 120.00180 * 23 21 19 26 26 H 1.48503 * 109.47099 * 240.00365 * 23 21 19 27 27 C 1.34663 * 111.26543 * 343.11873 * 16 15 14 28 28 O 1.21277 * 125.07305 * 180.85819 * 27 16 15 29 29 H 1.08994 * 109.47440 * 59.99908 * 1 2 3 30 30 H 1.09007 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47035 * 299.99560 * 1 2 3 32 32 H 1.09003 * 109.46898 * 300.00548 * 5 3 2 33 33 H 1.09009 * 109.46954 * 60.00037 * 5 3 2 34 34 H 1.08996 * 109.47687 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47081 * 305.00210 * 6 3 2 36 36 H 1.08994 * 109.47171 * 184.99820 * 6 3 2 37 37 H 1.09002 * 110.36206 * 37.20400 * 10 9 7 38 38 H 1.08998 * 110.36547 * 274.88904 * 10 9 7 39 39 H 1.08996 * 110.99282 * 278.51468 * 11 10 9 40 40 H 1.09004 * 111.02638 * 154.71244 * 11 10 9 41 41 H 1.09008 * 110.75777 * 206.79441 * 12 11 10 42 42 H 1.08996 * 110.92435 * 83.48471 * 12 11 10 43 43 H 1.08998 * 111.00110 * 97.14557 * 14 13 9 44 44 H 1.09004 * 111.00302 * 333.29683 * 14 13 9 45 45 H 1.09005 * 110.23673 * 143.79789 * 15 14 13 46 46 H 1.09000 * 110.23875 * 265.69428 * 15 14 13 47 47 H 1.09005 * 109.47274 * 209.99637 * 17 16 15 48 48 H 1.08999 * 109.46905 * 329.99993 * 17 16 15 49 49 H 1.08991 * 109.47051 * 300.00063 * 18 17 16 50 50 H 1.08999 * 109.47019 * 60.00343 * 18 17 16 51 51 H 0.96998 * 120.00133 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1415 0.9236 -2.1734 8 8 2.0185 0.7336 -2.5902 9 7 4.1952 0.8302 -3.0085 10 6 5.6102 1.0350 -2.6405 11 6 6.4156 0.2443 -3.7026 12 6 5.5663 0.4816 -4.9813 13 6 4.1315 0.5092 -4.4338 14 6 3.2893 1.5491 -5.1939 15 6 2.6030 0.6700 -6.2652 16 7 2.5759 -0.6858 -5.7019 17 6 1.7212 -1.7690 -6.1941 18 6 2.4617 -2.5481 -7.2831 19 6 1.5821 -3.6619 -7.7899 20 1 0.5941 -3.8006 -7.3763 21 6 2.0389 -4.5041 -8.7815 22 7 3.2422 -4.3355 -9.2847 23 14 0.9485 -5.8843 -9.4102 24 1 -0.3481 -5.8596 -8.6866 25 1 0.7070 -5.7013 -10.8640 26 1 1.6194 -7.1890 -9.1803 27 6 3.4381 -0.8050 -4.6744 28 8 3.6281 -1.8199 -4.0382 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2569 1.8013 1.9563 33 1 2.8830 1.0773 1.9563 34 1 2.6607 2.7672 1.4426 35 1 3.9931 0.5051 -0.2618 36 1 3.8427 2.2369 -0.6444 37 1 5.8043 0.6377 -1.6442 38 1 5.8638 2.0942 -2.6833 39 1 6.4564 -0.8158 -3.4522 40 1 7.4186 0.6549 -3.8184 41 1 5.6944 -0.3386 -5.6879 42 1 5.8211 1.4337 -5.4467 43 1 3.9251 2.3039 -5.6567 44 1 2.5523 2.0109 -4.5368 45 1 1.5880 1.0225 -6.4486 46 1 3.1794 0.6840 -7.1903 47 1 1.4748 -2.4400 -5.3712 48 1 0.8043 -1.3489 -6.6076 49 1 2.7081 -1.8772 -8.1059 50 1 3.3786 -2.9681 -6.8696 51 1 3.5634 -4.9277 -9.9826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271197973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:51 Heat of formation + Delta-G solvation = -112.358067 kcal Electronic energy + Delta-G solvation = -31445.386747 eV Core-core repulsion = 27344.863755 eV Total energy + Delta-G solvation = -4100.522992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.24004 -39.24365 -37.91641 -36.92608 -35.83698 -33.67875 -33.03882 -31.88434 -31.61867 -29.15188 -28.22101 -27.66933 -26.56122 -25.06560 -24.19297 -22.57139 -21.91892 -21.78321 -20.76414 -19.47258 -18.36724 -17.19627 -16.98610 -16.49460 -16.40897 -15.60272 -15.52694 -15.32011 -15.07358 -14.93709 -14.47206 -14.39366 -13.87313 -13.54742 -13.51883 -13.26371 -13.07153 -12.86208 -12.76086 -12.64724 -12.48429 -12.41123 -12.22264 -12.10876 -11.91210 -11.67306 -11.55747 -11.37464 -11.24550 -11.19731 -10.92702 -10.86167 -10.70361 -10.59907 -9.94225 -9.80492 -9.74860 -9.62659 -9.53764 -9.14633 -8.43898 -8.33370 -7.88880 -5.98828 -4.01449 2.59088 2.75395 3.28020 3.33462 3.40483 3.45316 3.67362 3.70699 4.24221 4.35442 4.48780 4.50127 4.55719 4.61440 4.83437 4.85288 4.93897 5.04455 5.09078 5.11451 5.20187 5.24253 5.31172 5.36040 5.37523 5.42746 5.47606 5.49601 5.54375 5.68560 5.70834 5.76853 5.78894 5.81673 5.87070 5.90067 6.03788 6.07648 6.17052 6.35035 6.59395 6.88777 7.11378 7.17180 7.46639 7.59595 7.72998 7.93836 8.01999 8.20774 8.39319 8.80297 9.05516 9.62251 11.12775 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.003170 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.644509 B = 8831.785385 C =10088.812985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.374 6.374 3 C 0.100 3.900 4 H 0.067 0.933 5 C -0.174 4.174 6 C -0.133 4.133 7 C 0.532 3.468 8 O -0.518 6.518 9 N -0.600 5.600 10 C 0.101 3.899 11 C -0.132 4.132 12 C -0.112 4.112 13 C 0.132 3.868 14 C -0.135 4.135 15 C 0.107 3.893 16 N -0.605 5.605 17 C 0.131 3.869 18 C 0.013 3.987 19 C -0.519 4.519 20 H 0.057 0.943 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.523 3.477 28 O -0.523 6.523 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.017 0.983 50 H 0.020 0.980 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 20.111 17.283 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.292 6.292 3 C 0.041 3.959 4 H 0.085 0.915 5 C -0.232 4.232 6 C -0.173 4.173 7 C 0.321 3.679 8 O -0.392 6.392 9 N -0.336 5.336 10 C -0.021 4.021 11 C -0.170 4.170 12 C -0.150 4.150 13 C 0.043 3.957 14 C -0.174 4.174 15 C -0.017 4.017 16 N -0.338 5.338 17 C 0.011 3.989 18 C -0.025 4.025 19 C -0.558 4.558 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.307 3.693 28 O -0.398 6.398 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.038 0.962 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.371 19.162 17.312 26.192 hybrid contribution -0.663 -0.593 -0.528 1.034 sum 3.709 18.569 16.784 25.304 Atomic orbital electron populations 1.22691 0.80946 1.02648 0.99467 1.87938 1.19853 1.26563 1.94877 1.21772 0.93476 0.86165 0.94499 0.91471 1.22298 1.02624 1.01479 0.96755 1.21818 0.99255 1.04079 0.92164 1.20213 0.83620 0.76773 0.87336 1.90733 1.22621 1.48608 1.77284 1.48214 1.07017 1.70218 1.08103 1.22406 0.80371 0.99886 0.99485 1.22845 0.98403 1.01866 0.93926 1.22537 0.90489 1.03848 0.98131 1.21142 0.97308 0.94923 0.82358 1.22950 0.99625 0.97085 0.97712 1.21996 1.01509 0.82045 0.96187 1.48404 1.40740 1.11998 1.32628 1.21776 0.92073 0.86671 0.98355 1.19411 0.96236 0.94518 0.92371 1.21146 1.01245 1.13528 1.19896 0.92438 1.24998 0.95113 0.97694 0.96506 1.69982 1.17099 1.38542 1.27669 0.86498 0.80746 0.82039 0.78508 1.19645 1.21010 1.20961 1.20269 0.79836 0.89006 0.80147 1.90675 1.65143 1.33253 1.50756 0.93570 0.89913 0.94809 0.92161 0.91632 0.91587 0.88025 0.87879 0.90394 0.91003 0.89784 0.89414 0.89207 0.89376 0.89352 0.89420 0.90616 0.90992 0.91314 0.91726 0.96463 0.96173 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.82 101.05 1.09 1.56 16 2 O -0.37 -5.31 9.58 -49.66 -0.48 -5.79 16 3 C 0.10 1.07 2.27 -26.73 -0.06 1.01 16 4 H 0.07 0.74 7.60 -51.93 -0.39 0.34 16 5 C -0.17 -1.31 9.53 37.16 0.35 -0.96 16 6 C -0.13 -1.34 4.43 -27.88 -0.12 -1.46 16 7 C 0.53 7.68 7.14 -10.98 -0.08 7.60 16 8 O -0.52 -9.51 13.94 -8.87 -0.12 -9.63 16 9 N -0.60 -7.93 2.90 -157.39 -0.46 -8.39 16 10 C 0.10 0.90 6.71 -2.37 -0.02 0.88 16 11 C -0.13 -1.28 7.09 -24.45 -0.17 -1.46 16 12 C -0.11 -1.31 6.08 -25.18 -0.15 -1.46 16 13 C 0.13 1.95 0.72 -132.42 -0.10 1.85 16 14 C -0.14 -1.72 6.19 -25.40 -0.16 -1.88 16 15 C 0.11 1.63 7.36 -2.99 -0.02 1.61 16 16 N -0.60 -12.31 2.94 -172.49 -0.51 -12.81 16 17 C 0.13 3.06 5.88 -4.04 -0.02 3.04 16 18 C 0.01 0.34 5.30 -27.88 -0.15 0.20 16 19 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 20 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 23 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.52 10.85 5.89 -11.12 -0.07 10.78 16 28 O -0.52 -13.11 17.62 5.56 0.10 -13.01 16 29 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.03 0.31 7.87 -51.93 -0.41 -0.10 16 32 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.98 7.86 -51.93 -0.41 0.58 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.59 7.51 -51.93 -0.39 0.20 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.25 7.82 -51.92 -0.41 0.85 16 42 H 0.09 0.76 7.44 -51.93 -0.39 0.37 16 43 H 0.09 0.82 7.44 -51.93 -0.39 0.44 16 44 H 0.09 1.20 6.74 -51.93 -0.35 0.85 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.07 1.73 7.95 -51.93 -0.41 1.32 16 48 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 409.03 15.07 6.16 6.16 Total: -1.00 -38.90 409.03 -8.65 -47.56 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.99 Total: -1.92 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.08 Total: 7.35 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.23 Total: -47.97 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.50 Total: -28.43 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -38.90 -8.65 -47.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271197973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.802 kcal (2) G-P(sol) polarization free energy of solvation -38.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds