Wall clock time and date at job start Tue Mar 31 2020 21:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00288 * 2 1 4 4 H 1.09000 * 109.46744 * 330.00617 * 3 2 1 5 5 C 1.53000 * 109.47190 * 90.00021 * 3 2 1 6 6 C 1.53002 * 109.47440 * 210.00165 * 3 2 1 7 7 C 1.50707 * 109.46839 * 65.00179 * 6 3 2 8 8 O 1.21283 * 120.00033 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99353 * 180.02562 * 7 6 3 10 10 C 1.47642 * 125.81871 * 359.93937 * 9 7 6 11 11 C 1.54981 * 104.85669 * 156.04345 * 10 9 7 12 12 C 1.55330 * 101.66293 * 36.60895 * 11 10 9 13 13 C 1.46232 * 125.80999 * 179.97438 * 9 7 6 14 14 C 1.53898 * 110.91446 * 60.11119 * 13 9 7 15 15 C 1.54647 * 101.58963 * 215.22023 * 14 13 9 16 16 N 1.46842 * 105.50199 * 24.79336 * 15 14 13 17 17 C 1.46496 * 124.36931 * 163.12368 * 16 15 14 18 18 C 1.53004 * 109.47100 * 89.99720 * 17 16 15 19 19 C 1.50701 * 109.46775 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00381 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99773 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99795 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00144 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46956 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47186 * 120.00180 * 23 21 19 26 26 H 1.48503 * 109.47099 * 240.00365 * 23 21 19 27 27 C 1.34663 * 111.26543 * 343.11873 * 16 15 14 28 28 O 1.21277 * 125.07305 * 180.85819 * 27 16 15 29 29 H 1.08994 * 109.47440 * 59.99908 * 1 2 3 30 30 H 1.09007 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47035 * 299.99560 * 1 2 3 32 32 H 1.09003 * 109.46898 * 300.00548 * 5 3 2 33 33 H 1.09009 * 109.46954 * 60.00037 * 5 3 2 34 34 H 1.08996 * 109.47687 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47081 * 305.00210 * 6 3 2 36 36 H 1.08994 * 109.47171 * 184.99820 * 6 3 2 37 37 H 1.09002 * 110.36206 * 37.20400 * 10 9 7 38 38 H 1.08998 * 110.36547 * 274.88904 * 10 9 7 39 39 H 1.08996 * 110.99282 * 278.51468 * 11 10 9 40 40 H 1.09004 * 111.02638 * 154.71244 * 11 10 9 41 41 H 1.09008 * 110.75777 * 206.79441 * 12 11 10 42 42 H 1.08996 * 110.92435 * 83.48471 * 12 11 10 43 43 H 1.08998 * 111.00110 * 97.14557 * 14 13 9 44 44 H 1.09004 * 111.00302 * 333.29683 * 14 13 9 45 45 H 1.09005 * 110.23673 * 143.79789 * 15 14 13 46 46 H 1.09000 * 110.23875 * 265.69428 * 15 14 13 47 47 H 1.09005 * 109.47274 * 209.99637 * 17 16 15 48 48 H 1.08999 * 109.46905 * 329.99993 * 17 16 15 49 49 H 1.08991 * 109.47051 * 300.00063 * 18 17 16 50 50 H 1.08999 * 109.47019 * 60.00343 * 18 17 16 51 51 H 0.96998 * 120.00133 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1415 0.9236 -2.1734 8 8 2.0185 0.7336 -2.5902 9 7 4.1952 0.8302 -3.0085 10 6 5.6102 1.0350 -2.6405 11 6 6.4156 0.2443 -3.7026 12 6 5.5663 0.4816 -4.9813 13 6 4.1315 0.5092 -4.4338 14 6 3.2893 1.5491 -5.1939 15 6 2.6030 0.6700 -6.2652 16 7 2.5759 -0.6858 -5.7019 17 6 1.7212 -1.7690 -6.1941 18 6 2.4617 -2.5481 -7.2831 19 6 1.5821 -3.6619 -7.7899 20 1 0.5941 -3.8006 -7.3763 21 6 2.0389 -4.5041 -8.7815 22 7 3.2422 -4.3355 -9.2847 23 14 0.9485 -5.8843 -9.4102 24 1 -0.3481 -5.8596 -8.6866 25 1 0.7070 -5.7013 -10.8640 26 1 1.6194 -7.1890 -9.1803 27 6 3.4381 -0.8050 -4.6744 28 8 3.6281 -1.8199 -4.0382 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2569 1.8013 1.9563 33 1 2.8830 1.0773 1.9563 34 1 2.6607 2.7672 1.4426 35 1 3.9931 0.5051 -0.2618 36 1 3.8427 2.2369 -0.6444 37 1 5.8043 0.6377 -1.6442 38 1 5.8638 2.0942 -2.6833 39 1 6.4564 -0.8158 -3.4522 40 1 7.4186 0.6549 -3.8184 41 1 5.6944 -0.3386 -5.6879 42 1 5.8211 1.4337 -5.4467 43 1 3.9251 2.3039 -5.6567 44 1 2.5523 2.0109 -4.5368 45 1 1.5880 1.0225 -6.4486 46 1 3.1794 0.6840 -7.1903 47 1 1.4748 -2.4400 -5.3712 48 1 0.8043 -1.3489 -6.6076 49 1 2.7081 -1.8772 -8.1059 50 1 3.3786 -2.9681 -6.8696 51 1 3.5634 -4.9277 -9.9826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271197973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:50 Heat of formation + Delta-G solvation = -139.784928 kcal Electronic energy + Delta-G solvation = -31446.576065 eV Core-core repulsion = 27344.863755 eV Total energy + Delta-G solvation = -4101.712309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.44746 -40.40194 -38.99496 -38.04683 -37.49007 -35.66305 -34.09453 -33.46447 -32.60452 -30.84852 -29.19384 -28.67006 -27.50664 -27.02599 -25.32169 -23.69975 -23.57742 -22.71641 -21.94469 -20.83045 -19.64313 -18.74153 -18.24971 -17.85732 -17.45770 -17.13413 -16.86359 -16.50990 -16.44311 -16.08325 -15.98361 -15.54327 -15.16752 -14.91600 -14.59035 -14.53612 -14.37572 -14.30666 -14.10971 -13.69403 -13.63567 -13.43321 -13.34455 -13.21475 -12.98249 -12.95930 -12.91642 -12.74758 -12.52269 -12.38391 -12.19410 -12.15795 -12.06069 -11.93250 -11.65569 -11.61146 -11.44917 -10.94306 -10.82646 -10.64908 -10.54574 -9.62243 -9.59141 -8.28187 -6.41279 1.35110 1.37053 1.39983 1.50505 1.65769 1.97152 2.17735 2.38539 2.87873 3.04681 3.24362 3.35696 3.48756 3.68156 3.78260 3.82884 3.98589 4.08739 4.17312 4.19713 4.24659 4.35595 4.40030 4.46354 4.51800 4.55715 4.56510 4.59946 4.66805 4.73091 4.75578 4.78495 4.79976 4.82634 4.87263 4.92955 4.97013 5.03300 5.07499 5.25857 5.28581 5.31105 5.35570 5.40387 5.54302 5.75796 6.10444 6.24391 6.30732 6.51600 6.72442 7.15598 7.20839 7.28247 8.84356 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.003170 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.644509 B = 8831.785385 C =10088.812985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.410 6.410 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.164 4.164 6 C -0.125 4.125 7 C 0.518 3.482 8 O -0.570 6.570 9 N -0.603 5.603 10 C 0.098 3.902 11 C -0.130 4.130 12 C -0.111 4.111 13 C 0.134 3.866 14 C -0.116 4.116 15 C 0.096 3.904 16 N -0.617 5.617 17 C 0.145 3.855 18 C 0.031 3.969 19 C -0.549 4.549 20 H 0.061 0.939 21 C 0.003 3.997 22 N -0.929 5.929 23 Si 0.972 3.028 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.279 1.279 27 C 0.502 3.498 28 O -0.586 6.586 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.045 0.955 40 H 0.130 0.870 41 H 0.055 0.945 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.084 0.916 49 H 0.006 0.994 50 H -0.027 1.027 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 23.223 17.913 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.329 6.329 3 C 0.032 3.968 4 H 0.077 0.923 5 C -0.221 4.221 6 C -0.164 4.164 7 C 0.308 3.692 8 O -0.448 6.448 9 N -0.337 5.337 10 C -0.023 4.023 11 C -0.168 4.168 12 C -0.149 4.149 13 C 0.044 3.956 14 C -0.155 4.155 15 C -0.026 4.026 16 N -0.349 5.349 17 C 0.023 3.977 18 C -0.007 4.007 19 C -0.587 4.587 20 H 0.079 0.921 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.796 3.204 24 H -0.187 1.187 25 H -0.194 1.194 26 H -0.204 1.204 27 C 0.290 3.710 28 O -0.466 6.466 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.168 0.832 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.073 0.927 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.056 0.944 48 H 0.103 0.897 49 H 0.024 0.976 50 H -0.009 1.009 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.477 22.338 17.945 29.172 hybrid contribution -0.963 -1.598 -0.748 2.010 sum 4.514 20.740 17.196 27.317 Atomic orbital electron populations 1.22694 0.80483 1.02483 0.99992 1.87881 1.20703 1.29165 1.95181 1.22055 0.93485 0.84586 0.96639 0.92295 1.22229 1.02956 1.02823 0.94136 1.21936 0.99273 1.06566 0.88652 1.21124 0.83152 0.75876 0.89016 1.90706 1.24791 1.50934 1.78410 1.48453 1.08841 1.69190 1.07260 1.22795 0.77287 1.02509 0.99662 1.22889 1.00509 1.00254 0.93136 1.22652 0.88765 1.04940 0.98518 1.21188 0.98642 0.91408 0.84379 1.22977 0.99462 0.96725 0.96296 1.22369 1.03034 0.79741 0.97504 1.48574 1.40141 1.13237 1.32945 1.21307 0.92938 0.87421 0.96001 1.19157 0.94479 0.94366 0.92742 1.21538 1.01784 1.14720 1.20672 0.92081 1.26012 0.96672 1.00442 0.96436 1.70108 1.18906 1.39767 1.28120 0.85301 0.78740 0.77995 0.78413 1.18675 1.19386 1.20447 1.21603 0.79505 0.90780 0.79122 1.90609 1.67077 1.36196 1.52720 0.95206 0.90557 0.91982 0.92124 0.91625 0.88746 0.87608 0.83198 0.89012 0.86260 0.93569 0.85226 0.92657 0.84650 0.84365 0.90191 0.89484 0.89781 0.94361 0.89730 0.97569 1.00859 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.00 10.82 113.37 1.23 2.22 16 2 O -0.41 -11.97 9.58 -135.19 -1.29 -13.27 16 3 C 0.09 1.84 2.27 30.60 0.07 1.91 16 4 H 0.06 1.27 7.60 -2.39 -0.02 1.25 16 5 C -0.16 -2.05 9.53 71.98 0.69 -1.37 16 6 C -0.13 -2.24 4.43 29.85 0.13 -2.11 16 7 C 0.52 14.62 7.14 87.66 0.63 15.25 16 8 O -0.57 -21.63 13.94 10.76 0.15 -21.48 16 9 N -0.60 -14.99 2.90 -770.25 -2.23 -17.22 16 10 C 0.10 1.37 6.71 86.84 0.58 1.95 16 11 C -0.13 -2.23 7.09 32.07 0.23 -2.00 16 12 C -0.11 -2.39 6.08 31.60 0.19 -2.20 16 13 C 0.13 3.85 0.72 3.36 0.00 3.86 16 14 C -0.12 -2.71 6.19 31.46 0.19 -2.52 16 15 C 0.10 2.89 7.36 86.88 0.64 3.53 16 16 N -0.62 -26.50 2.94 -818.10 -2.41 -28.91 16 17 C 0.15 7.25 5.88 86.38 0.51 7.76 16 18 C 0.03 1.79 5.30 29.85 0.16 1.94 16 19 C -0.55 -33.57 9.11 25.60 0.23 -33.34 16 20 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 21 C 0.00 0.16 5.46 84.66 0.46 0.63 16 22 N -0.93 -58.77 13.29 21.45 0.28 -58.49 16 23 Si 0.97 46.34 29.54 68.60 2.03 48.36 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 C 0.50 22.11 5.89 87.62 0.52 22.63 16 28 O -0.59 -32.05 17.62 -3.02 -0.05 -32.10 16 29 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.06 1.14 7.87 -2.39 -0.02 1.12 16 32 H 0.06 0.76 7.87 -2.39 -0.02 0.74 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 1.83 7.86 -2.39 -0.02 1.82 16 36 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.06 7.51 -2.39 -0.02 1.04 16 38 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 40 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.05 1.59 7.82 -2.38 -0.02 1.57 16 42 H 0.14 1.65 7.44 -2.39 -0.02 1.63 16 43 H 0.14 1.86 7.44 -2.39 -0.02 1.84 16 44 H 0.08 2.04 6.74 -2.38 -0.02 2.03 16 45 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.04 2.10 7.95 -2.38 -0.02 2.08 16 48 H 0.08 3.81 8.14 -2.39 -0.02 3.79 16 49 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 50 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 51 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -95.14 409.03 3.82 -91.32 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.89 Total: 13.64 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 6.46 Total: 18.14 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.35 Total: -104.61 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -1.20 Total: -66.85 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -95.14 3.82 -91.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271197973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.466 kcal (2) G-P(sol) polarization free energy of solvation -95.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds