Wall clock time and date at job start Tue Mar 31 2020 21:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00267 * 2 1 4 4 H 1.09006 * 109.47185 * 30.00020 * 3 2 1 5 5 C 1.52999 * 109.46960 * 270.00199 * 3 2 1 6 6 C 1.52999 * 109.47458 * 150.00147 * 3 2 1 7 7 C 1.50702 * 109.47148 * 294.99724 * 6 3 2 8 8 O 1.21282 * 119.99561 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00028 * 179.72093 * 7 6 3 10 10 C 1.47139 * 125.73517 * 359.97412 * 9 7 6 11 11 C 1.54338 * 107.22735 * 179.48654 * 10 9 7 12 12 C 1.55416 * 103.09442 * 338.23528 * 11 10 9 13 13 H 1.09005 * 112.32387 * 153.80053 * 12 11 10 14 14 C 1.46915 * 125.73321 * 180.27603 * 9 7 6 15 15 H 1.09009 * 109.82704 * 84.85336 * 14 9 7 16 16 C 1.52318 * 110.85092 * 323.10494 * 14 9 7 17 17 C 1.52982 * 109.48005 * 306.86890 * 16 14 9 18 18 C 1.50306 * 109.18602 * 308.13209 * 17 16 14 19 19 O 1.21282 * 118.57464 * 201.49326 * 18 17 16 20 20 N 1.33119 * 122.85431 * 21.47750 * 18 17 16 21 21 C 1.46504 * 117.27121 * 179.79893 * 20 18 17 22 22 C 1.52997 * 109.46991 * 84.62486 * 21 20 18 23 23 C 1.50702 * 109.46935 * 184.95940 * 22 21 20 24 24 H 1.07995 * 120.00120 * 0.02562 * 23 22 21 25 25 C 1.37885 * 119.99881 * 179.97438 * 23 22 21 26 26 N 1.31512 * 119.99764 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99803 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47021 * 90.00515 * 27 25 23 29 29 H 1.48493 * 109.46963 * 210.00237 * 27 25 23 30 30 H 1.48495 * 109.47190 * 330.00582 * 27 25 23 31 31 H 1.08997 * 109.47265 * 60.00014 * 1 2 3 32 32 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46910 * 299.99887 * 1 2 3 34 34 H 1.08999 * 109.47221 * 299.99626 * 5 3 2 35 35 H 1.08999 * 109.47449 * 60.00096 * 5 3 2 36 36 H 1.09007 * 109.47293 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.46892 * 174.99887 * 6 3 2 38 38 H 1.09000 * 109.47002 * 55.00043 * 6 3 2 39 39 H 1.08994 * 109.88801 * 299.04145 * 10 9 7 40 40 H 1.09002 * 109.88888 * 60.23105 * 10 9 7 41 41 H 1.09002 * 110.85988 * 219.73232 * 11 10 9 42 42 H 1.09004 * 110.62082 * 96.62158 * 11 10 9 43 43 H 1.09004 * 109.46735 * 66.86794 * 16 14 9 44 44 H 1.08997 * 109.47452 * 186.85965 * 16 14 9 45 45 H 1.09005 * 109.51750 * 188.22940 * 17 16 14 46 46 H 1.08992 * 109.57055 * 68.08290 * 17 16 14 47 47 H 1.09004 * 109.47085 * 204.62417 * 21 20 18 48 48 H 1.09006 * 109.46900 * 324.62327 * 21 20 18 49 49 H 1.09000 * 109.47196 * 304.96077 * 22 21 20 50 50 H 1.09000 * 109.47474 * 64.96077 * 22 21 20 51 51 H 0.96998 * 119.99436 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7713 -1.4425 6 6 3.3589 1.2632 0.7212 7 6 3.1417 0.9237 2.1733 8 8 2.0187 0.7336 2.5901 9 7 4.1958 0.8251 3.0073 10 6 5.6061 1.0221 2.6368 11 6 6.4469 0.8214 3.9154 12 6 5.4195 1.0691 5.0549 13 1 5.6870 0.5479 5.9742 14 6 4.1303 0.4969 4.4378 15 1 4.1066 -0.5851 4.5682 16 6 2.9021 1.1260 5.0828 17 6 2.8797 2.6258 4.7819 18 6 4.2054 3.2251 5.1591 19 8 4.2635 4.4178 5.3715 20 7 5.3186 2.5037 5.2706 21 6 6.5450 3.2146 5.6410 22 6 6.6160 3.3497 7.1634 23 6 7.8128 4.1853 7.5382 24 1 8.4579 4.5808 6.7676 25 6 8.0835 4.4459 8.8648 26 7 7.2975 3.9647 9.8031 27 14 9.5666 5.4822 9.3293 28 1 9.1725 6.9129 9.3861 29 1 10.0722 5.0550 10.6586 30 1 10.6339 5.3028 8.3126 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8829 1.0774 -1.9563 35 1 1.2568 1.8014 -1.9563 36 1 2.6606 2.7673 -1.4426 37 1 3.8427 2.2370 0.6442 38 1 3.9931 0.5051 0.2617 39 1 5.8963 0.2924 1.8811 40 1 5.7515 2.0326 2.2549 41 1 7.2588 1.5471 3.9639 42 1 6.8371 -0.1952 3.9626 43 1 2.0021 0.6612 4.6802 44 1 2.9390 0.9723 6.1612 45 1 2.0874 3.1014 5.3600 46 1 2.6986 2.7821 3.7185 47 1 7.4105 2.6557 5.2851 48 1 6.5412 4.2060 5.1879 49 1 5.7084 3.8307 7.5281 50 1 6.7085 2.3607 7.6121 51 1 7.4882 4.1477 10.7364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271198278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:17 Heat of formation + Delta-G solvation = -111.907422 kcal Electronic energy + Delta-G solvation = -31487.564011 eV Core-core repulsion = 27387.060561 eV Total energy + Delta-G solvation = -4100.503450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33069 -39.48739 -38.24254 -37.25300 -34.88355 -34.02477 -32.94788 -32.85300 -31.01605 -29.32232 -28.66278 -27.92410 -26.70795 -25.08572 -24.27254 -22.93580 -21.95265 -21.60821 -20.85678 -19.21105 -17.98546 -17.27583 -17.09720 -16.93875 -16.23653 -16.08587 -15.79075 -15.46584 -15.25872 -14.79564 -14.64873 -14.38875 -14.21611 -13.71276 -13.52235 -13.50894 -13.12481 -12.87517 -12.73631 -12.67034 -12.51448 -12.34112 -12.23667 -12.15793 -11.96014 -11.74162 -11.63927 -11.31395 -11.15143 -11.00556 -10.94768 -10.87556 -10.86429 -10.64761 -9.90702 -9.84350 -9.77808 -9.69844 -9.28710 -8.95224 -8.74397 -8.33289 -8.05023 -5.98967 -4.01524 2.54737 2.77023 3.18172 3.33342 3.38900 3.40844 3.48898 3.55812 4.08716 4.36627 4.47443 4.47974 4.51407 4.75626 4.83665 4.86187 4.90160 4.99488 5.08713 5.12248 5.13500 5.18209 5.24131 5.32534 5.37356 5.37468 5.42263 5.45705 5.56666 5.57727 5.62508 5.69386 5.73867 5.82493 5.85752 5.92730 6.00800 6.12316 6.20929 6.32638 6.54250 6.85325 6.91279 7.00396 7.38399 7.64425 7.78348 8.02439 8.06845 8.08411 8.39334 8.74322 9.05244 9.61881 11.12605 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.002625 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.074582 B =10664.969642 C =10814.571623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.101 3.899 4 H 0.069 0.931 5 C -0.175 4.175 6 C -0.137 4.137 7 C 0.535 3.465 8 O -0.527 6.527 9 N -0.614 5.614 10 C 0.103 3.897 11 C -0.149 4.149 12 C 0.137 3.863 13 H 0.106 0.894 14 C 0.133 3.867 15 H 0.090 0.910 16 C -0.131 4.131 17 C -0.124 4.124 18 C 0.513 3.487 19 O -0.546 6.546 20 N -0.592 5.592 21 C 0.109 3.891 22 C 0.016 3.984 23 C -0.518 4.518 24 H 0.055 0.945 25 C 0.058 3.942 26 N -0.894 5.894 27 Si 0.893 3.107 28 H -0.280 1.280 29 H -0.287 1.287 30 H -0.274 1.274 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.023 0.977 50 H 0.013 0.987 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -11.281 -21.338 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.042 3.958 4 H 0.087 0.913 5 C -0.233 4.233 6 C -0.177 4.177 7 C 0.324 3.676 8 O -0.404 6.404 9 N -0.350 5.350 10 C -0.020 4.020 11 C -0.188 4.188 12 C 0.031 3.969 13 H 0.124 0.876 14 C 0.029 3.971 15 H 0.108 0.892 16 C -0.169 4.169 17 C -0.164 4.164 18 C 0.301 3.699 19 O -0.424 6.424 20 N -0.324 5.324 21 C -0.012 4.012 22 C -0.022 4.022 23 C -0.557 4.557 24 H 0.073 0.927 25 C -0.143 4.143 26 N -0.533 5.533 27 Si 0.721 3.279 28 H -0.206 1.206 29 H -0.213 1.213 30 H -0.199 1.199 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.032 0.968 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.310 -10.936 -20.894 25.355 hybrid contribution 0.796 0.712 0.376 1.132 sum -8.515 -10.224 -20.518 24.455 Atomic orbital electron populations 1.22687 0.81016 1.02373 0.99761 1.87874 1.19796 1.26972 1.94962 1.21779 0.93508 0.85856 0.94645 0.91304 1.22301 1.02606 1.01725 0.96642 1.21848 0.99088 1.04394 0.92372 1.20106 0.83506 0.76653 0.87349 1.90657 1.22632 1.49762 1.77309 1.48474 1.06753 1.70390 1.09372 1.22060 0.80445 1.01426 0.98030 1.23240 0.98535 1.03790 0.93192 1.21970 0.94245 0.82686 0.97976 0.87597 1.21681 0.95377 0.99609 0.80395 0.89223 1.21712 0.98973 0.95117 1.01080 1.21525 0.95587 0.96043 1.03254 1.19953 0.85582 0.86976 0.77428 1.90741 1.85887 1.15502 1.50256 1.47265 1.10476 1.06798 1.67841 1.21942 0.83173 0.96047 1.00040 1.19325 0.97723 0.96943 0.88216 1.21085 1.10435 1.32210 0.91948 0.92653 1.24996 0.96705 0.95990 0.96637 1.69973 1.37857 1.45300 1.00132 0.86577 0.82871 0.80693 0.77731 1.20642 1.21269 1.19875 0.94723 0.90094 0.93481 0.91680 0.92158 0.91414 0.87788 0.88117 0.91043 0.91335 0.88335 0.89414 0.88339 0.90444 0.88775 0.89511 0.91703 0.91000 0.95860 0.96840 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.82 101.05 1.09 1.43 16 2 O -0.38 -4.12 9.58 -49.66 -0.48 -4.59 16 3 C 0.10 0.91 2.27 -26.73 -0.06 0.85 16 4 H 0.07 0.68 7.60 -51.93 -0.39 0.29 16 5 C -0.18 -1.19 9.53 37.16 0.35 -0.83 16 6 C -0.14 -1.18 4.61 -27.88 -0.13 -1.31 16 7 C 0.53 6.19 6.23 -10.99 -0.07 6.12 16 8 O -0.53 -7.46 12.68 -8.87 -0.11 -7.57 16 9 N -0.61 -6.66 2.82 -164.29 -0.46 -7.12 16 10 C 0.10 0.92 6.47 -2.99 -0.02 0.90 16 11 C -0.15 -1.45 6.34 -24.75 -0.16 -1.60 16 12 C 0.14 1.74 3.66 -66.73 -0.24 1.50 16 13 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.13 1.54 3.27 -67.55 -0.22 1.31 16 15 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 16 C -0.13 -1.71 4.95 -27.09 -0.13 -1.84 16 17 C -0.12 -1.90 5.59 -28.08 -0.16 -2.06 16 18 C 0.51 9.75 7.34 -11.91 -0.09 9.67 16 19 O -0.55 -13.04 16.01 5.56 0.09 -12.95 16 20 N -0.59 -10.16 2.52 -165.49 -0.42 -10.58 16 21 C 0.11 2.22 4.73 -4.04 -0.02 2.20 16 22 C 0.02 0.41 5.20 -27.88 -0.15 0.27 16 23 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 24 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 25 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 26 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 27 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 31 H 0.03 0.25 7.87 -51.93 -0.41 -0.16 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 36 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.05 5.92 -51.93 -0.31 0.74 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.32 6.28 -51.93 -0.33 0.99 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.09 1.31 6.13 -51.93 -0.32 0.99 16 47 H 0.06 1.15 5.96 -51.93 -0.31 0.84 16 48 H 0.07 1.61 7.32 -51.93 -0.38 1.23 16 49 H 0.02 0.69 7.86 -51.93 -0.41 0.28 16 50 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -35.85 396.12 -8.82 -44.67 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.72 Total: -1.32 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.41 Total: 3.17 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.14 Total: -44.19 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.50 Total: -25.11 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.85 -8.82 -44.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271198278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.241 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds