Wall clock time and date at job start Tue Mar 31 2020 21:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00267 * 2 1 4 4 H 1.09006 * 109.47185 * 30.00020 * 3 2 1 5 5 C 1.52999 * 109.46960 * 270.00199 * 3 2 1 6 6 C 1.52999 * 109.47458 * 150.00147 * 3 2 1 7 7 C 1.50702 * 109.47148 * 294.99724 * 6 3 2 8 8 O 1.21282 * 119.99561 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00028 * 179.72093 * 7 6 3 10 10 C 1.47139 * 125.73517 * 359.97412 * 9 7 6 11 11 C 1.54338 * 107.22735 * 179.48654 * 10 9 7 12 12 C 1.55416 * 103.09442 * 338.23528 * 11 10 9 13 13 H 1.09005 * 112.32387 * 153.80053 * 12 11 10 14 14 C 1.46915 * 125.73321 * 180.27603 * 9 7 6 15 15 H 1.09009 * 109.82704 * 84.85336 * 14 9 7 16 16 C 1.52318 * 110.85092 * 323.10494 * 14 9 7 17 17 C 1.52982 * 109.48005 * 306.86890 * 16 14 9 18 18 C 1.50306 * 109.18602 * 308.13209 * 17 16 14 19 19 O 1.21282 * 118.57464 * 201.49326 * 18 17 16 20 20 N 1.33119 * 122.85431 * 21.47750 * 18 17 16 21 21 C 1.46504 * 117.27121 * 179.79893 * 20 18 17 22 22 C 1.52997 * 109.46991 * 84.62486 * 21 20 18 23 23 C 1.50702 * 109.46935 * 184.95940 * 22 21 20 24 24 H 1.07995 * 120.00120 * 0.02562 * 23 22 21 25 25 C 1.37885 * 119.99881 * 179.97438 * 23 22 21 26 26 N 1.31512 * 119.99764 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99803 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47021 * 90.00515 * 27 25 23 29 29 H 1.48493 * 109.46963 * 210.00237 * 27 25 23 30 30 H 1.48495 * 109.47190 * 330.00582 * 27 25 23 31 31 H 1.08997 * 109.47265 * 60.00014 * 1 2 3 32 32 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46910 * 299.99887 * 1 2 3 34 34 H 1.08999 * 109.47221 * 299.99626 * 5 3 2 35 35 H 1.08999 * 109.47449 * 60.00096 * 5 3 2 36 36 H 1.09007 * 109.47293 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.46892 * 174.99887 * 6 3 2 38 38 H 1.09000 * 109.47002 * 55.00043 * 6 3 2 39 39 H 1.08994 * 109.88801 * 299.04145 * 10 9 7 40 40 H 1.09002 * 109.88888 * 60.23105 * 10 9 7 41 41 H 1.09002 * 110.85988 * 219.73232 * 11 10 9 42 42 H 1.09004 * 110.62082 * 96.62158 * 11 10 9 43 43 H 1.09004 * 109.46735 * 66.86794 * 16 14 9 44 44 H 1.08997 * 109.47452 * 186.85965 * 16 14 9 45 45 H 1.09005 * 109.51750 * 188.22940 * 17 16 14 46 46 H 1.08992 * 109.57055 * 68.08290 * 17 16 14 47 47 H 1.09004 * 109.47085 * 204.62417 * 21 20 18 48 48 H 1.09006 * 109.46900 * 324.62327 * 21 20 18 49 49 H 1.09000 * 109.47196 * 304.96077 * 22 21 20 50 50 H 1.09000 * 109.47474 * 64.96077 * 22 21 20 51 51 H 0.96998 * 119.99436 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7713 -1.4425 6 6 3.3589 1.2632 0.7212 7 6 3.1417 0.9237 2.1733 8 8 2.0187 0.7336 2.5901 9 7 4.1958 0.8251 3.0073 10 6 5.6061 1.0221 2.6368 11 6 6.4469 0.8214 3.9154 12 6 5.4195 1.0691 5.0549 13 1 5.6870 0.5479 5.9742 14 6 4.1303 0.4969 4.4378 15 1 4.1066 -0.5851 4.5682 16 6 2.9021 1.1260 5.0828 17 6 2.8797 2.6258 4.7819 18 6 4.2054 3.2251 5.1591 19 8 4.2635 4.4178 5.3715 20 7 5.3186 2.5037 5.2706 21 6 6.5450 3.2146 5.6410 22 6 6.6160 3.3497 7.1634 23 6 7.8128 4.1853 7.5382 24 1 8.4579 4.5808 6.7676 25 6 8.0835 4.4459 8.8648 26 7 7.2975 3.9647 9.8031 27 14 9.5666 5.4822 9.3293 28 1 9.1725 6.9129 9.3861 29 1 10.0722 5.0550 10.6586 30 1 10.6339 5.3028 8.3126 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8829 1.0774 -1.9563 35 1 1.2568 1.8014 -1.9563 36 1 2.6606 2.7673 -1.4426 37 1 3.8427 2.2370 0.6442 38 1 3.9931 0.5051 0.2617 39 1 5.8963 0.2924 1.8811 40 1 5.7515 2.0326 2.2549 41 1 7.2588 1.5471 3.9639 42 1 6.8371 -0.1952 3.9626 43 1 2.0021 0.6612 4.6802 44 1 2.9390 0.9723 6.1612 45 1 2.0874 3.1014 5.3600 46 1 2.6986 2.7821 3.7185 47 1 7.4105 2.6557 5.2851 48 1 6.5412 4.2060 5.1879 49 1 5.7084 3.8307 7.5281 50 1 6.7085 2.3607 7.6121 51 1 7.4882 4.1477 10.7364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271198278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:16 Heat of formation + Delta-G solvation = -135.073627 kcal Electronic energy + Delta-G solvation = -31488.568573 eV Core-core repulsion = 27387.060561 eV Total energy + Delta-G solvation = -4101.508012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.43946 -40.58192 -39.20984 -38.27679 -36.45036 -35.20358 -34.74381 -33.68413 -32.24757 -30.99658 -29.64854 -28.67908 -27.40347 -26.96667 -25.29061 -24.28272 -23.09980 -22.73476 -22.05711 -20.21325 -19.08762 -18.79143 -18.11015 -17.93392 -17.61986 -17.39610 -16.90216 -16.65633 -16.48025 -16.03238 -15.91069 -15.49664 -15.19786 -14.83546 -14.68253 -14.58193 -14.30475 -14.23830 -13.97871 -13.80589 -13.52054 -13.46168 -13.41624 -13.07951 -12.87554 -12.84942 -12.83254 -12.62728 -12.46171 -12.28986 -12.27885 -12.07661 -11.96638 -11.80407 -11.66647 -11.61624 -11.38450 -10.80452 -10.57198 -10.52563 -10.39644 -9.61259 -9.60399 -8.21127 -6.32714 1.39239 1.42070 1.52306 1.64086 1.71786 1.95768 2.07679 2.42181 2.90036 3.12784 3.17957 3.49313 3.56115 3.72084 3.80653 3.85572 3.97420 4.08807 4.20733 4.25375 4.32286 4.36876 4.40744 4.51056 4.54504 4.57493 4.61316 4.69348 4.70554 4.72382 4.79251 4.80195 4.83173 4.85143 4.92094 4.96832 5.02882 5.05879 5.06830 5.17576 5.30656 5.31534 5.40006 5.49572 5.63914 5.85046 6.19529 6.32245 6.55105 6.59906 6.83401 7.22626 7.24062 7.36480 8.91164 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.002625 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.074582 B =10664.969642 C =10814.571623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.397 6.397 3 C 0.096 3.904 4 H 0.052 0.948 5 C -0.169 4.169 6 C -0.132 4.132 7 C 0.527 3.473 8 O -0.560 6.560 9 N -0.616 5.616 10 C 0.102 3.898 11 C -0.139 4.139 12 C 0.122 3.878 13 H 0.108 0.892 14 C 0.137 3.863 15 H 0.115 0.885 16 C -0.125 4.125 17 C -0.112 4.112 18 C 0.505 3.495 19 O -0.605 6.605 20 N -0.583 5.583 21 C 0.126 3.874 22 C 0.027 3.973 23 C -0.539 4.539 24 H 0.065 0.935 25 C -0.002 4.002 26 N -0.934 5.934 27 Si 0.968 3.032 28 H -0.280 1.280 29 H -0.280 1.280 30 H -0.254 1.254 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.049 0.951 49 H -0.030 1.030 50 H 0.000 1.000 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -12.667 -23.558 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.317 6.317 3 C 0.038 3.962 4 H 0.071 0.929 5 C -0.226 4.226 6 C -0.172 4.172 7 C 0.317 3.683 8 O -0.438 6.438 9 N -0.350 5.350 10 C -0.020 4.020 11 C -0.177 4.177 12 C 0.018 3.982 13 H 0.126 0.874 14 C 0.033 3.967 15 H 0.133 0.867 16 C -0.163 4.163 17 C -0.152 4.152 18 C 0.295 3.705 19 O -0.488 6.488 20 N -0.313 5.313 21 C 0.004 3.996 22 C -0.011 4.011 23 C -0.577 4.577 24 H 0.084 0.916 25 C -0.199 4.199 26 N -0.575 5.575 27 Si 0.792 3.208 28 H -0.206 1.206 29 H -0.206 1.206 30 H -0.178 1.178 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.119 0.881 48 H 0.068 0.932 49 H -0.011 1.011 50 H 0.018 0.982 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.337 -12.373 -23.149 27.255 hybrid contribution 0.128 1.119 1.104 1.577 sum -7.210 -11.255 -22.045 25.780 Atomic orbital electron populations 1.22743 0.80385 1.02987 0.99812 1.87830 1.20639 1.28066 1.95136 1.21897 0.93390 0.84961 0.95981 0.92948 1.22245 1.02973 1.02428 0.94945 1.21905 0.99251 1.05825 0.90190 1.20674 0.83091 0.76017 0.88473 1.90645 1.23922 1.51223 1.78059 1.48553 1.07654 1.70043 1.08788 1.22228 0.78923 1.02492 0.98314 1.23243 0.97343 1.05467 0.91694 1.22349 0.96644 0.79554 0.99651 0.87406 1.21671 0.93505 1.00600 0.80918 0.86743 1.21660 1.00157 0.93262 1.01182 1.21424 0.93046 0.97496 1.03245 1.20615 0.86998 0.86397 0.76498 1.90706 1.86839 1.18171 1.53063 1.47260 1.08876 1.08699 1.66448 1.21519 0.85912 0.96272 0.95860 1.19139 0.94786 0.95168 0.92019 1.21557 1.11106 1.32470 0.92566 0.91637 1.26011 1.00025 0.97268 0.96642 1.70120 1.39956 1.46801 1.00586 0.85410 0.79146 0.78320 0.77941 1.20598 1.20585 1.17815 0.93118 0.89259 0.94963 0.91060 0.92043 0.90195 0.86099 0.86235 0.87621 0.91577 0.89011 0.86174 0.88286 0.90704 0.89396 0.88997 0.88135 0.93250 1.01125 0.98188 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.82 113.37 1.23 1.86 16 2 O -0.40 -8.20 9.58 -135.19 -1.29 -9.50 16 3 C 0.10 1.61 2.27 30.59 0.07 1.68 16 4 H 0.05 1.03 7.60 -2.38 -0.02 1.01 16 5 C -0.17 -1.92 9.53 71.98 0.69 -1.23 16 6 C -0.13 -1.96 4.61 29.85 0.14 -1.82 16 7 C 0.53 11.25 6.23 87.66 0.55 11.79 16 8 O -0.56 -15.46 12.68 10.76 0.14 -15.32 16 9 N -0.62 -11.80 2.82 -792.09 -2.23 -14.03 16 10 C 0.10 1.44 6.47 86.71 0.56 2.00 16 11 C -0.14 -2.21 6.34 31.88 0.20 -2.01 16 12 C 0.12 2.90 3.66 46.35 0.17 3.07 16 13 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 14 C 0.14 2.89 3.27 45.01 0.15 3.04 16 15 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 16 C -0.12 -3.21 4.95 30.36 0.15 -3.06 16 17 C -0.11 -3.52 5.59 29.72 0.17 -3.36 16 18 C 0.51 19.91 7.34 87.79 0.64 20.56 16 19 O -0.61 -30.59 16.01 -3.04 -0.05 -30.64 16 20 N -0.58 -20.11 2.52 -796.81 -2.01 -22.12 16 21 C 0.13 5.21 4.73 86.38 0.41 5.62 16 22 C 0.03 1.45 5.20 29.85 0.16 1.61 16 23 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 24 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 25 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 26 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 27 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 30 H -0.25 -10.91 7.11 99.48 0.71 -10.21 16 31 H 0.05 0.67 7.87 -2.39 -0.02 0.65 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.03 0.63 8.09 -2.39 -0.02 0.61 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.68 7.87 -2.39 -0.02 0.66 16 36 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.64 5.92 -2.39 -0.01 1.62 16 42 H 0.12 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.10 2.62 6.28 -2.39 -0.01 2.60 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 46 H 0.09 2.81 6.13 -2.39 -0.01 2.79 16 47 H 0.10 3.42 5.96 -2.39 -0.01 3.41 16 48 H 0.05 2.27 7.32 -2.38 -0.02 2.25 16 49 H -0.03 -1.91 7.86 -2.39 -0.02 -1.93 16 50 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 51 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -82.11 396.12 3.74 -78.37 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.91 Total: 15.12 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.97 Total: 9.33 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -3.95 Total: -94.20 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -1.21 Total: -55.46 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -82.11 3.74 -78.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271198278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.702 kcal (2) G-P(sol) polarization free energy of solvation -82.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds