Wall clock time and date at job start Tue Mar 31 2020 20:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.52994 * 109.47321 * 119.99983 * 2 1 3 5 5 H 1.08997 * 109.47204 * 300.00337 * 4 2 1 6 6 C 1.52995 * 109.47186 * 60.00027 * 4 2 1 7 7 C 1.50700 * 109.47236 * 179.97438 * 4 2 1 8 8 O 1.21276 * 120.00387 * 324.13924 * 7 4 2 9 9 N 1.34788 * 119.99832 * 144.14075 * 7 4 2 10 10 C 1.47180 * 135.99347 * 184.64616 * 9 7 4 11 11 C 1.53104 * 87.74565 * 153.47996 * 10 9 7 12 12 C 1.47176 * 135.99564 * 5.01069 * 9 7 4 13 13 C 1.52436 * 114.21622 * 139.76674 * 11 10 9 14 14 N 1.46292 * 109.56538 * 177.93845 * 13 11 10 15 15 C 1.46498 * 118.73241 * 164.07528 * 14 13 11 16 16 C 1.52997 * 109.47021 * 270.00167 * 15 14 13 17 17 C 1.50700 * 109.47253 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00073 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00321 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00336 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47068 * 89.99913 * 21 19 17 23 23 H 1.48498 * 109.47259 * 210.00222 * 21 19 17 24 24 H 1.48499 * 109.46829 * 330.00254 * 21 19 17 25 25 C 1.33716 * 122.54300 * 344.07287 * 14 13 11 26 26 O 1.21280 * 118.36317 * 183.33569 * 25 14 13 27 27 C 1.50169 * 123.28155 * 3.31176 * 25 14 13 28 28 O 1.42556 * 114.51438 * 271.90331 * 11 10 9 29 29 H 1.08997 * 109.47257 * 299.99712 * 1 2 3 30 30 H 1.09002 * 109.47449 * 60.00092 * 1 2 3 31 31 H 1.09002 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47441 * 239.99962 * 2 1 3 33 33 H 1.09002 * 109.46849 * 300.00275 * 3 2 1 34 34 H 1.08991 * 109.47113 * 59.99752 * 3 2 1 35 35 H 1.08993 * 109.47335 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47427 * 54.04118 * 6 4 2 37 37 H 1.09003 * 109.47597 * 174.04329 * 6 4 2 38 38 H 1.09000 * 109.47474 * 294.03785 * 6 4 2 39 39 H 1.09000 * 113.48632 * 268.17295 * 10 9 7 40 40 H 1.08991 * 113.49570 * 38.68618 * 10 9 7 41 41 H 1.09003 * 113.49119 * 321.30497 * 12 9 7 42 42 H 1.09002 * 113.49376 * 91.81992 * 12 9 7 43 43 H 1.09006 * 109.45757 * 297.96750 * 13 11 10 44 44 H 1.09001 * 109.45556 * 57.91227 * 13 11 10 45 45 H 1.09004 * 109.46919 * 29.99759 * 15 14 13 46 46 H 1.08993 * 109.47490 * 149.99876 * 15 14 13 47 47 H 1.09004 * 109.46941 * 299.99578 * 16 15 14 48 48 H 1.08999 * 109.47547 * 59.99276 * 16 15 14 49 49 H 0.96999 * 119.99904 * 179.97438 * 20 19 17 50 50 H 1.09000 * 109.34221 * 222.04562 * 27 25 14 51 51 H 1.09000 * 109.22402 * 102.42479 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1637 1.2492 7 6 3.5470 -0.7217 1.2488 8 8 4.1532 -0.8294 0.2040 9 7 4.2212 -0.6026 2.4099 10 6 5.6332 -0.4791 2.8062 11 6 5.1537 0.2511 4.0635 12 6 3.8687 -0.5456 3.8377 13 6 5.9103 -0.1254 5.3322 14 7 5.4054 0.6634 6.4560 15 6 5.7258 0.2325 7.8191 16 6 4.6404 -0.7221 8.3205 17 6 4.9702 -1.1658 9.7224 18 1 5.8643 -0.8030 10.2074 19 6 4.1299 -2.0343 10.3864 20 7 3.0408 -2.4758 9.7959 21 14 4.5384 -2.5838 12.1243 22 1 3.9281 -1.6425 13.0974 23 1 3.9995 -3.9488 12.3514 24 1 6.0122 -2.5969 12.3058 25 6 4.6629 1.7625 6.2873 26 8 4.3359 2.3934 7.2702 27 6 4.2141 2.2553 4.9417 28 8 5.0048 1.6604 3.9085 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1299 1.4425 -0.0005 36 1 1.8036 -2.6458 0.3107 37 1 1.9779 -2.7074 2.0811 38 1 0.4453 -2.1656 1.3560 39 1 6.1111 -1.4362 3.0154 40 1 6.2197 0.1480 2.1349 41 1 2.9624 0.0255 4.0390 42 1 3.8706 -1.5206 4.3250 43 1 5.7667 -1.1859 5.5394 44 1 6.9726 0.0768 5.1949 45 1 6.6886 -0.2786 7.8217 46 1 5.7747 1.1029 8.4733 47 1 3.6776 -0.2110 8.3179 48 1 4.5914 -1.5925 7.6663 49 1 2.4498 -3.0871 10.2628 50 1 4.3215 3.3391 4.8998 51 1 3.1673 1.9901 4.7932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271198953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:21 Heat of formation + Delta-G solvation = -81.169760 kcal Electronic energy + Delta-G solvation = -30983.067407 eV Core-core repulsion = 26883.896842 eV Total energy + Delta-G solvation = -4099.170565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60326 -39.96782 -38.73945 -36.60493 -36.07358 -35.52355 -33.14791 -31.53348 -30.56957 -29.82024 -27.90684 -27.54314 -26.42576 -26.37083 -24.62117 -24.26243 -22.25069 -21.01963 -20.33725 -19.09729 -18.63922 -17.56890 -17.48464 -16.79155 -16.29063 -16.18225 -15.71007 -15.61545 -15.06829 -14.80133 -14.73696 -14.49833 -14.21416 -13.88387 -13.77942 -13.74778 -13.22043 -12.93889 -12.85332 -12.73160 -12.64848 -12.47966 -12.33217 -12.31290 -12.24901 -11.81463 -11.69760 -11.43898 -11.24908 -11.06280 -10.97493 -10.96130 -10.79844 -10.75350 -10.41402 -9.99403 -9.98814 -9.78644 -9.41724 -9.14179 -8.92292 -8.43230 -8.22865 -6.09084 -4.11913 2.44853 2.53261 2.76163 3.04349 3.19868 3.27927 3.34440 3.37332 3.93788 4.12274 4.23859 4.37072 4.40437 4.60978 4.67967 4.73746 4.84993 4.99555 5.04715 5.05785 5.15678 5.21390 5.23591 5.27742 5.30245 5.31460 5.37705 5.41179 5.42067 5.46168 5.54527 5.56113 5.61049 5.62566 5.68677 5.82783 5.94988 5.98565 6.09036 6.14034 6.44274 6.54838 6.72157 6.76367 7.44796 7.47560 7.60061 7.80394 7.89832 7.98100 8.25907 8.40227 8.94093 9.52543 11.02345 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002851 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.750893 B = 9819.889094 C =10620.214074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.100 4.100 5 H 0.088 0.912 6 C -0.142 4.142 7 C 0.555 3.445 8 O -0.539 6.539 9 N -0.641 5.641 10 C 0.127 3.873 11 C 0.060 3.940 12 C 0.078 3.922 13 C 0.106 3.894 14 N -0.597 5.597 15 C 0.111 3.889 16 C 0.016 3.984 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.481 3.519 26 O -0.537 6.537 27 C 0.050 3.950 28 O -0.337 6.337 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.021 0.979 48 H 0.015 0.985 49 H 0.261 0.739 50 H 0.131 0.869 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 3.610 -19.308 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.121 4.121 5 H 0.106 0.894 6 C -0.199 4.199 7 C 0.346 3.654 8 O -0.416 6.416 9 N -0.376 5.376 10 C 0.004 3.996 11 C 0.018 3.982 12 C -0.046 4.046 13 C -0.018 4.018 14 N -0.330 5.330 15 C -0.009 4.009 16 C -0.022 4.022 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.267 3.733 26 O -0.415 6.415 27 C -0.029 4.029 28 O -0.255 6.255 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.039 0.961 48 H 0.033 0.967 49 H 0.071 0.929 50 H 0.148 0.852 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.872 3.858 -19.718 20.110 hybrid contribution -0.036 -0.564 1.307 1.424 sum -0.909 3.294 -18.411 18.725 Atomic orbital electron populations 1.21896 0.94555 1.02072 1.02029 1.21003 0.95672 0.96263 0.96950 1.21877 1.01654 0.95514 1.01716 1.21329 0.90838 0.99047 1.00902 0.89366 1.21767 1.01839 0.93557 1.02782 1.20211 0.89497 0.74535 0.81170 1.90690 1.70388 1.49987 1.30536 1.49571 1.09124 1.73329 1.05613 1.22885 0.85223 0.99504 0.92017 1.22632 0.96727 0.83244 0.95585 1.23697 0.99270 1.01490 0.80111 1.21771 0.98485 0.97711 0.83843 1.47694 1.51357 1.25533 1.08390 1.21986 0.99851 0.99791 0.79304 1.19347 0.93727 0.93230 0.95881 1.21072 1.08375 1.27217 0.99312 0.92481 1.24983 0.94937 0.96145 0.98134 1.69958 1.12773 1.32979 1.37541 0.86558 0.78640 0.77901 0.84700 1.20570 1.21210 1.19804 1.20599 0.79542 0.81242 0.91892 1.90765 1.55204 1.55492 1.40026 1.22853 0.96208 1.00319 0.83535 1.88067 1.71970 1.17597 1.47911 0.92506 0.92377 0.92205 0.90013 0.92443 0.92758 0.92318 0.91756 0.92158 0.90941 0.87580 0.88892 0.89577 0.87425 0.88509 0.90142 0.91573 0.90346 0.96108 0.96674 0.92936 0.85157 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 2 C -0.08 -0.74 2.20 -90.62 -0.20 -0.93 16 3 C -0.15 -1.43 8.93 37.16 0.33 -1.10 16 4 C -0.10 -0.97 2.21 -91.78 -0.20 -1.18 16 5 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 6 C -0.14 -1.22 8.64 37.15 0.32 -0.90 16 7 C 0.56 6.87 6.00 -10.98 -0.07 6.80 16 8 O -0.54 -8.38 16.57 5.56 0.09 -8.28 16 9 N -0.64 -7.15 3.69 -185.11 -0.68 -7.83 16 10 C 0.13 1.23 8.07 -8.06 -0.07 1.16 16 11 C 0.06 0.64 1.23 -90.93 -0.11 0.53 16 12 C 0.08 0.81 7.42 -8.19 -0.06 0.75 16 13 C 0.11 1.25 5.90 -4.44 -0.03 1.22 16 14 N -0.60 -9.69 2.84 -174.73 -0.50 -10.19 16 15 C 0.11 2.19 5.26 -4.04 -0.02 2.17 16 16 C 0.02 0.39 5.29 -27.88 -0.15 0.24 16 17 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.48 8.12 7.58 -11.71 -0.09 8.03 16 26 O -0.54 -11.44 16.28 5.56 0.09 -11.35 16 27 C 0.05 0.62 6.69 35.75 0.24 0.86 16 28 O -0.34 -4.06 10.69 -35.23 -0.38 -4.44 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 32 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.68 6.86 -51.93 -0.36 0.32 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.51 6.76 -51.93 -0.35 0.16 16 39 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 0.88 6.81 -51.93 -0.35 0.53 16 42 H 0.11 1.06 7.90 -51.93 -0.41 0.65 16 43 H 0.10 1.08 7.85 -51.93 -0.41 0.67 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 46 H 0.08 1.70 7.19 -51.93 -0.37 1.33 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 50 H 0.13 1.41 8.14 -51.93 -0.42 0.98 16 51 H 0.09 0.96 7.25 -51.93 -0.38 0.58 16 LS Contribution 407.43 15.07 6.14 6.14 Total: -1.00 -34.44 407.43 -8.50 -42.93 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.80 Total: -1.86 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.18 Total: 3.97 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.44 Total: -43.22 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.19 Total: -24.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.44 -8.50 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271198953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.235 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds