Wall clock time and date at job start Tue Mar 31 2020 20:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.52994 * 109.47321 * 119.99983 * 2 1 3 5 5 H 1.08997 * 109.47204 * 300.00337 * 4 2 1 6 6 C 1.52995 * 109.47186 * 60.00027 * 4 2 1 7 7 C 1.50700 * 109.47236 * 179.97438 * 4 2 1 8 8 O 1.21276 * 120.00387 * 324.13924 * 7 4 2 9 9 N 1.34788 * 119.99832 * 144.14075 * 7 4 2 10 10 C 1.47180 * 135.99347 * 184.64616 * 9 7 4 11 11 C 1.53104 * 87.74565 * 153.47996 * 10 9 7 12 12 C 1.47176 * 135.99564 * 5.01069 * 9 7 4 13 13 C 1.52436 * 114.21622 * 139.76674 * 11 10 9 14 14 N 1.46292 * 109.56538 * 177.93845 * 13 11 10 15 15 C 1.46498 * 118.73241 * 164.07528 * 14 13 11 16 16 C 1.52997 * 109.47021 * 270.00167 * 15 14 13 17 17 C 1.50700 * 109.47253 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00073 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00321 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00336 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47068 * 89.99913 * 21 19 17 23 23 H 1.48498 * 109.47259 * 210.00222 * 21 19 17 24 24 H 1.48499 * 109.46829 * 330.00254 * 21 19 17 25 25 C 1.33716 * 122.54300 * 344.07287 * 14 13 11 26 26 O 1.21280 * 118.36317 * 183.33569 * 25 14 13 27 27 C 1.50169 * 123.28155 * 3.31176 * 25 14 13 28 28 O 1.42556 * 114.51438 * 271.90331 * 11 10 9 29 29 H 1.08997 * 109.47257 * 299.99712 * 1 2 3 30 30 H 1.09002 * 109.47449 * 60.00092 * 1 2 3 31 31 H 1.09002 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47441 * 239.99962 * 2 1 3 33 33 H 1.09002 * 109.46849 * 300.00275 * 3 2 1 34 34 H 1.08991 * 109.47113 * 59.99752 * 3 2 1 35 35 H 1.08993 * 109.47335 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47427 * 54.04118 * 6 4 2 37 37 H 1.09003 * 109.47597 * 174.04329 * 6 4 2 38 38 H 1.09000 * 109.47474 * 294.03785 * 6 4 2 39 39 H 1.09000 * 113.48632 * 268.17295 * 10 9 7 40 40 H 1.08991 * 113.49570 * 38.68618 * 10 9 7 41 41 H 1.09003 * 113.49119 * 321.30497 * 12 9 7 42 42 H 1.09002 * 113.49376 * 91.81992 * 12 9 7 43 43 H 1.09006 * 109.45757 * 297.96750 * 13 11 10 44 44 H 1.09001 * 109.45556 * 57.91227 * 13 11 10 45 45 H 1.09004 * 109.46919 * 29.99759 * 15 14 13 46 46 H 1.08993 * 109.47490 * 149.99876 * 15 14 13 47 47 H 1.09004 * 109.46941 * 299.99578 * 16 15 14 48 48 H 1.08999 * 109.47547 * 59.99276 * 16 15 14 49 49 H 0.96999 * 119.99904 * 179.97438 * 20 19 17 50 50 H 1.09000 * 109.34221 * 222.04562 * 27 25 14 51 51 H 1.09000 * 109.22402 * 102.42479 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1637 1.2492 7 6 3.5470 -0.7217 1.2488 8 8 4.1532 -0.8294 0.2040 9 7 4.2212 -0.6026 2.4099 10 6 5.6332 -0.4791 2.8062 11 6 5.1537 0.2511 4.0635 12 6 3.8687 -0.5456 3.8377 13 6 5.9103 -0.1254 5.3322 14 7 5.4054 0.6634 6.4560 15 6 5.7258 0.2325 7.8191 16 6 4.6404 -0.7221 8.3205 17 6 4.9702 -1.1658 9.7224 18 1 5.8643 -0.8030 10.2074 19 6 4.1299 -2.0343 10.3864 20 7 3.0408 -2.4758 9.7959 21 14 4.5384 -2.5838 12.1243 22 1 3.9281 -1.6425 13.0974 23 1 3.9995 -3.9488 12.3514 24 1 6.0122 -2.5969 12.3058 25 6 4.6629 1.7625 6.2873 26 8 4.3359 2.3934 7.2702 27 6 4.2141 2.2553 4.9417 28 8 5.0048 1.6604 3.9085 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1299 1.4425 -0.0005 36 1 1.8036 -2.6458 0.3107 37 1 1.9779 -2.7074 2.0811 38 1 0.4453 -2.1656 1.3560 39 1 6.1111 -1.4362 3.0154 40 1 6.2197 0.1480 2.1349 41 1 2.9624 0.0255 4.0390 42 1 3.8706 -1.5206 4.3250 43 1 5.7667 -1.1859 5.5394 44 1 6.9726 0.0768 5.1949 45 1 6.6886 -0.2786 7.8217 46 1 5.7747 1.1029 8.4733 47 1 3.6776 -0.2110 8.3179 48 1 4.5914 -1.5925 7.6663 49 1 2.4498 -3.0871 10.2628 50 1 4.3215 3.3391 4.8998 51 1 3.1673 1.9901 4.7932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271198953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:20 Heat of formation + Delta-G solvation = -103.897162 kcal Electronic energy + Delta-G solvation = -30984.052941 eV Core-core repulsion = 26883.896842 eV Total energy + Delta-G solvation = -4100.156099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.58504 -41.06696 -39.83290 -37.54624 -37.03420 -36.91620 -35.09425 -32.48946 -31.97732 -30.97474 -29.04927 -28.34997 -27.49227 -27.22866 -26.29245 -25.05158 -23.66468 -22.34364 -21.25833 -19.97024 -19.80461 -18.67295 -18.61361 -18.38098 -17.51059 -17.24921 -16.88796 -16.68085 -16.46983 -16.06604 -15.73015 -15.53142 -15.32422 -14.97178 -14.73252 -14.60194 -14.45019 -14.35820 -14.23531 -13.87505 -13.68515 -13.42597 -13.35503 -13.17109 -13.11476 -12.94307 -12.85566 -12.78170 -12.57125 -12.50696 -12.08392 -11.98653 -11.87965 -11.79812 -11.66833 -11.52193 -11.42781 -11.31169 -10.80201 -10.55689 -10.44881 -9.86383 -9.65807 -8.20855 -6.31201 1.41282 1.42689 1.46677 1.53183 1.53409 1.67367 1.85725 2.21865 2.42586 3.04520 3.13680 3.20279 3.30191 3.61982 3.63970 3.85564 3.91110 4.07151 4.11804 4.21660 4.32346 4.33785 4.39784 4.43194 4.44490 4.49974 4.50787 4.54850 4.58293 4.64400 4.68305 4.77221 4.78046 4.84432 4.88536 4.95897 4.99492 5.02300 5.14715 5.17118 5.24885 5.39942 5.46925 5.48295 5.60896 5.70407 5.84474 6.20347 6.42023 6.56323 6.83195 7.05387 7.06674 7.37845 8.90740 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002851 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.750893 B = 9819.889094 C =10620.214074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.099 4.099 5 H 0.097 0.903 6 C -0.139 4.139 7 C 0.550 3.450 8 O -0.578 6.578 9 N -0.644 5.644 10 C 0.129 3.871 11 C 0.062 3.938 12 C 0.078 3.922 13 C 0.103 3.897 14 N -0.597 5.597 15 C 0.126 3.874 16 C 0.029 3.971 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.005 3.995 20 N -0.928 5.928 21 Si 0.961 3.039 22 H -0.279 1.279 23 H -0.281 1.281 24 H -0.260 1.260 25 C 0.473 3.527 26 O -0.591 6.591 27 C 0.062 3.938 28 O -0.339 6.339 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.054 0.946 47 H -0.023 1.023 48 H 0.009 0.991 49 H 0.263 0.737 50 H 0.149 0.851 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 3.122 -19.564 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 C -0.204 4.204 4 C -0.120 4.120 5 H 0.115 0.885 6 C -0.196 4.196 7 C 0.342 3.658 8 O -0.457 6.457 9 N -0.378 5.378 10 C 0.006 3.994 11 C 0.020 3.980 12 C -0.045 4.045 13 C -0.020 4.020 14 N -0.329 5.329 15 C 0.004 3.996 16 C -0.009 4.009 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.786 3.214 22 H -0.205 1.205 23 H -0.206 1.206 24 H -0.184 1.184 25 C 0.262 3.738 26 O -0.472 6.472 27 C -0.016 4.016 28 O -0.257 6.257 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.073 0.927 47 H -0.004 1.004 48 H 0.027 0.973 49 H 0.072 0.928 50 H 0.166 0.834 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.501 3.359 -19.994 20.281 hybrid contribution -0.128 -0.410 1.365 1.431 sum -0.629 2.949 -18.629 18.871 Atomic orbital electron populations 1.21865 0.92750 1.02818 1.02654 1.20987 0.97072 0.95664 0.96028 1.21844 0.99962 0.96077 1.02538 1.21399 0.89128 0.99965 1.01503 0.88500 1.21764 1.02927 0.92623 1.02312 1.20679 0.90502 0.73775 0.80819 1.90666 1.71304 1.51916 1.31845 1.49635 1.09952 1.72552 1.05652 1.23056 0.84730 1.00535 0.91033 1.22631 0.97017 0.82739 0.95575 1.23774 0.99270 1.01901 0.79587 1.22066 0.99896 0.97586 0.82446 1.47713 1.51115 1.25790 1.08238 1.21530 0.99160 0.97830 0.81049 1.19143 0.93168 0.93397 0.95222 1.21537 1.08619 1.27180 1.00722 0.91995 1.25875 0.94774 0.96280 1.02376 1.70075 1.13769 1.33654 1.39317 0.85502 0.79066 0.77421 0.79395 1.20530 1.20602 1.18392 1.21468 0.78537 0.80746 0.93087 1.90738 1.57168 1.57184 1.42118 1.22819 0.96787 1.01184 0.80834 1.88088 1.71965 1.18335 1.47326 0.91968 0.91666 0.91420 0.91577 0.91485 0.92074 0.94810 0.92384 0.92454 0.89125 0.84979 0.89095 0.89341 0.86650 0.87542 0.87617 0.89072 0.92714 1.00423 0.97284 0.92788 0.83355 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.84 71.98 0.64 -1.18 16 2 C -0.08 -1.37 2.20 -10.80 -0.02 -1.40 16 3 C -0.15 -2.69 8.93 71.98 0.64 -2.05 16 4 C -0.10 -1.82 2.21 -11.54 -0.03 -1.85 16 5 H 0.10 1.60 7.58 -2.39 -0.02 1.59 16 6 C -0.14 -2.21 8.64 71.98 0.62 -1.59 16 7 C 0.55 13.26 6.00 87.66 0.53 13.79 16 8 O -0.58 -18.01 16.57 -3.02 -0.05 -18.06 16 9 N -0.64 -13.44 3.69 -858.86 -3.17 -16.61 16 10 C 0.13 2.23 8.07 83.40 0.67 2.90 16 11 C 0.06 1.20 1.23 -10.99 -0.01 1.19 16 12 C 0.08 1.48 7.42 83.33 0.62 2.10 16 13 C 0.10 2.19 5.90 86.23 0.51 2.69 16 14 N -0.60 -18.91 2.84 -825.71 -2.34 -21.25 16 15 C 0.13 4.97 5.26 86.38 0.45 5.42 16 16 C 0.03 1.43 5.29 29.85 0.16 1.59 16 17 C -0.54 -29.66 9.11 25.60 0.23 -29.42 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 19 C 0.01 0.30 5.46 84.65 0.46 0.76 16 20 N -0.93 -54.41 13.29 21.45 0.28 -54.13 16 21 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 25 C 0.47 15.84 7.58 87.66 0.66 16.51 16 26 O -0.59 -25.79 16.28 -3.03 -0.05 -25.84 16 27 C 0.06 1.45 6.69 71.07 0.48 1.93 16 28 O -0.34 -7.48 10.69 -148.98 -1.59 -9.07 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.75 6.57 -2.39 -0.02 0.73 16 32 H 0.07 1.37 7.86 -2.38 -0.02 1.35 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.03 0.78 6.86 -2.39 -0.02 0.76 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.10 6.76 -2.39 -0.02 1.09 16 39 H 0.13 1.61 8.10 -2.39 -0.02 1.59 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.09 1.66 6.81 -2.39 -0.02 1.64 16 42 H 0.12 2.06 7.90 -2.39 -0.02 2.04 16 43 H 0.11 2.11 7.85 -2.38 -0.02 2.09 16 44 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.09 3.11 8.04 -2.38 -0.02 3.09 16 46 H 0.05 2.42 7.19 -2.39 -0.02 2.40 16 47 H -0.02 -1.32 8.14 -2.38 -0.02 -1.34 16 48 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 50 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 51 H 0.10 2.11 7.25 -2.39 -0.02 2.09 16 Total: -1.00 -76.38 407.43 2.62 -73.75 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.90 Total: 14.71 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.61 Total: 11.38 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -5.23 Total: -91.98 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -1.69 Total: -52.96 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.38 2.62 -73.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271198953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.143 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds