Wall clock time and date at job start Tue Mar 31 2020 20:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47321 * 2 1 4 4 C 1.53008 * 109.46683 * 119.99968 * 2 1 3 5 5 H 1.09004 * 109.46729 * 299.99340 * 4 2 1 6 6 C 1.53006 * 109.46683 * 179.97438 * 4 2 1 7 7 C 1.50693 * 109.47541 * 60.00043 * 4 2 1 8 8 O 1.21281 * 119.99760 * 36.47509 * 7 4 2 9 9 N 1.34778 * 119.99967 * 216.47997 * 7 4 2 10 10 C 1.47673 * 134.45074 * 355.05216 * 9 7 4 11 11 C 1.53404 * 85.95555 * 155.75290 * 10 9 7 12 12 C 1.47683 * 134.44888 * 175.04984 * 9 7 4 13 13 C 1.52546 * 113.81818 * 268.61434 * 11 10 9 14 14 N 1.46272 * 109.57247 * 273.92350 * 13 11 10 15 15 C 1.46498 * 118.71487 * 163.96561 * 14 13 11 16 16 C 1.52998 * 109.47405 * 270.02011 * 15 14 13 17 17 C 1.50703 * 109.47416 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99899 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99798 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00368 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46753 * 89.99825 * 21 19 17 23 23 H 1.48495 * 109.46846 * 209.99784 * 21 19 17 24 24 H 1.48492 * 109.46910 * 329.99973 * 21 19 17 25 25 C 1.33708 * 122.56696 * 343.99059 * 14 13 11 26 26 O 1.21283 * 118.38124 * 183.19086 * 25 14 13 27 27 C 1.50170 * 123.23973 * 3.16426 * 25 14 13 28 28 O 1.42676 * 113.76868 * 137.98487 * 11 10 9 29 29 H 1.08995 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46872 * 300.00358 * 1 2 3 31 31 H 1.08999 * 109.46753 * 60.00580 * 1 2 3 32 32 H 1.08997 * 109.47345 * 239.99069 * 2 1 3 33 33 H 1.08995 * 109.46915 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47013 * 299.99681 * 3 2 1 35 35 H 1.08993 * 109.47328 * 59.99636 * 3 2 1 36 36 H 1.09004 * 109.47276 * 66.04544 * 6 4 2 37 37 H 1.08999 * 109.46894 * 186.03921 * 6 4 2 38 38 H 1.08993 * 109.47184 * 306.04164 * 6 4 2 39 39 H 1.09006 * 113.80014 * 41.49503 * 10 9 7 40 40 H 1.08996 * 113.79817 * 270.00781 * 10 9 7 41 41 H 1.09000 * 113.79267 * 89.99053 * 12 9 7 42 42 H 1.08997 * 113.79722 * 318.51240 * 12 9 7 43 43 H 1.09000 * 109.44474 * 153.89965 * 13 11 10 44 44 H 1.09002 * 109.46641 * 33.95934 * 13 11 10 45 45 H 1.08998 * 109.47565 * 30.02462 * 15 14 13 46 46 H 1.09006 * 109.47253 * 150.02130 * 15 14 13 47 47 H 1.09007 * 109.47145 * 300.00540 * 16 15 14 48 48 H 1.09006 * 109.46817 * 59.99852 * 16 15 14 49 49 H 0.96997 * 119.99960 * 179.97438 * 20 19 17 50 50 H 1.09009 * 109.34953 * 222.15763 * 27 25 14 51 51 H 1.08994 * 109.23040 * 102.52876 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 3.5700 -0.7219 1.2490 7 6 1.5377 -2.1421 1.2494 8 8 1.4473 -2.7533 0.2058 9 7 1.1888 -2.7334 2.4092 10 6 1.2536 -2.3400 3.8311 11 6 0.1091 -3.3384 4.0471 12 6 0.5886 -4.0344 2.7671 13 6 -1.2797 -2.7186 3.9287 14 7 -1.6768 -2.1558 5.2191 15 6 -2.7956 -1.2110 5.2606 16 6 -2.2673 0.2134 5.0791 17 6 -3.4182 1.1854 5.1224 18 1 -4.4256 0.8235 5.2655 19 6 -3.1849 2.5367 4.9794 20 7 -1.9581 2.9776 4.8057 21 14 -4.6116 3.7415 5.0323 22 1 -4.8365 4.1810 6.4329 23 1 -4.2947 4.9213 4.1881 24 1 -5.8375 3.0798 4.5183 25 6 -1.0582 -2.4696 6.3622 26 8 -1.4872 -2.0039 7.3966 27 6 0.1413 -3.3707 6.4285 28 8 0.2535 -4.1330 5.2233 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 3.1300 1.4423 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6768 1.9563 0.8899 36 1 3.9338 0.3000 1.3570 37 1 3.9333 -1.3265 2.0800 38 1 3.9330 -1.1394 0.3100 39 1 0.9726 -1.3027 4.0137 40 1 2.1834 -2.6236 4.3240 41 1 1.3204 -4.8229 2.9429 42 1 -0.2203 -4.3427 2.1047 43 1 -1.9951 -3.4854 3.6315 44 1 -1.2621 -1.9285 3.1780 45 1 -3.4972 -1.4431 4.4593 46 1 -3.3030 -1.2906 6.2221 47 1 -1.5657 0.4456 5.8804 48 1 -1.7600 0.2930 4.1176 49 1 -1.7941 3.9282 4.7047 50 1 0.0376 -4.0483 7.2761 51 1 1.0384 -2.7653 6.5578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271198955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:24 Heat of formation + Delta-G solvation = -85.864457 kcal Electronic energy + Delta-G solvation = -31661.178297 eV Core-core repulsion = 27561.804154 eV Total energy + Delta-G solvation = -4099.374142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52228 -39.91848 -38.62405 -36.62946 -35.98233 -35.45283 -33.11359 -31.32399 -30.36245 -29.76077 -27.78984 -27.33010 -26.56729 -26.45049 -24.61193 -24.14520 -22.16794 -20.94727 -20.17066 -19.08246 -18.20399 -18.01764 -17.38420 -16.80850 -16.19292 -16.02596 -15.82146 -15.53822 -14.91959 -14.67366 -14.54894 -14.34930 -14.09853 -13.97020 -13.65552 -13.52121 -13.26649 -13.10603 -12.76600 -12.65927 -12.49543 -12.31266 -12.24049 -12.21729 -12.06571 -11.68614 -11.61289 -11.40677 -11.16319 -11.01885 -10.96948 -10.76848 -10.74250 -10.57239 -10.45958 -9.99003 -9.96772 -9.71106 -9.42988 -9.14406 -8.91677 -8.42172 -8.22936 -6.08080 -4.10678 2.42369 2.51062 2.80256 3.12530 3.28652 3.32911 3.35078 3.38296 3.97585 4.09961 4.23695 4.41248 4.55481 4.64353 4.75235 4.81964 5.02666 5.07744 5.13775 5.18022 5.24128 5.28663 5.29255 5.35948 5.37222 5.40441 5.42999 5.45929 5.56095 5.57482 5.68911 5.74949 5.79762 5.82939 5.98052 5.99281 6.00745 6.17509 6.33527 6.44088 6.44663 6.52941 6.71096 6.76519 7.43203 7.47516 7.60322 7.80952 7.90484 8.02893 8.26671 8.40636 8.94806 9.53628 11.03265 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007932 B = 0.004782 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.280147 B = 5854.050401 C = 8539.013908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 C -0.149 4.149 4 C -0.103 4.103 5 H 0.093 0.907 6 C -0.139 4.139 7 C 0.554 3.446 8 O -0.537 6.537 9 N -0.641 5.641 10 C 0.079 3.921 11 C 0.061 3.939 12 C 0.133 3.867 13 C 0.115 3.885 14 N -0.597 5.597 15 C 0.111 3.889 16 C 0.017 3.983 17 C -0.520 4.520 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.480 3.520 26 O -0.537 6.537 27 C 0.050 3.950 28 O -0.352 6.352 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.020 0.980 48 H 0.014 0.986 49 H 0.261 0.739 50 H 0.130 0.870 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.921 -11.622 -6.140 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.096 4.096 3 C -0.207 4.207 4 C -0.124 4.124 5 H 0.112 0.888 6 C -0.197 4.197 7 C 0.344 3.656 8 O -0.413 6.413 9 N -0.379 5.379 10 C -0.044 4.044 11 C 0.020 3.980 12 C 0.010 3.990 13 C -0.009 4.009 14 N -0.330 5.330 15 C -0.009 4.009 16 C -0.021 4.021 17 C -0.559 4.559 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.266 3.734 26 O -0.415 6.415 27 C -0.029 4.029 28 O -0.270 6.270 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.039 0.961 48 H 0.032 0.968 49 H 0.070 0.930 50 H 0.148 0.852 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.828 -11.653 -6.393 17.144 hybrid contribution -0.712 1.035 0.135 1.263 sum 10.117 -10.618 -6.258 15.945 Atomic orbital electron populations 1.21907 0.94589 1.02025 1.02562 1.20979 0.96353 0.95830 0.96431 1.21901 1.00833 0.95400 1.02536 1.21379 0.97558 0.91891 1.01599 0.88835 1.21745 0.92595 1.02941 1.02386 1.20371 0.75578 0.88378 0.81247 1.90688 1.53900 1.66108 1.30624 1.49753 1.63694 1.18769 1.05709 1.23873 0.98791 1.01505 0.80278 1.23357 0.94630 0.92794 0.87202 1.23006 0.97518 0.87689 0.90800 1.21627 0.93142 0.98832 0.87305 1.47696 1.34658 1.44877 1.05729 1.21986 0.86579 0.90149 1.02218 1.19339 0.97074 0.88547 0.97119 1.21056 0.93399 0.91413 1.50049 0.92522 1.24965 0.95660 0.98411 0.95048 1.69952 1.19325 1.14395 1.49473 0.86574 0.82597 0.80665 0.78073 1.20569 1.21201 1.19815 1.20639 0.85832 0.82796 0.84126 1.90766 1.64487 1.53994 1.32249 1.22839 0.96215 0.95376 0.88462 1.88082 1.92874 1.33252 1.12762 0.92695 0.91859 0.92406 0.90320 0.92503 0.92385 0.91985 0.90880 0.92556 0.91873 0.88450 0.88383 0.88210 0.88652 0.90308 0.88817 0.91698 0.90285 0.96123 0.96771 0.92972 0.85212 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.94 37.16 0.33 -1.70 16 2 C -0.08 -0.91 2.20 -90.62 -0.20 -1.11 16 3 C -0.15 -1.58 8.84 37.15 0.33 -1.25 16 4 C -0.10 -1.20 2.19 -91.77 -0.20 -1.40 16 5 H 0.09 1.12 7.46 -51.93 -0.39 0.74 16 6 C -0.14 -1.33 8.64 37.16 0.32 -1.01 16 7 C 0.55 7.33 5.96 -10.99 -0.07 7.26 16 8 O -0.54 -8.69 16.56 5.56 0.09 -8.59 16 9 N -0.64 -7.39 3.50 -181.10 -0.63 -8.02 16 10 C 0.08 0.83 7.10 -3.20 -0.02 0.81 16 11 C 0.06 0.67 1.21 -90.54 -0.11 0.56 16 12 C 0.13 1.32 8.25 -3.20 -0.03 1.29 16 13 C 0.11 1.51 5.75 -4.40 -0.03 1.48 16 14 N -0.60 -10.00 2.84 -174.68 -0.50 -10.50 16 15 C 0.11 2.25 5.26 -4.04 -0.02 2.23 16 16 C 0.02 0.42 5.29 -27.88 -0.15 0.28 16 17 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 21 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.48 8.11 7.58 -11.72 -0.09 8.02 16 26 O -0.54 -11.43 16.28 5.56 0.09 -11.34 16 27 C 0.05 0.59 6.67 35.75 0.24 0.83 16 28 O -0.35 -3.93 10.66 -35.23 -0.38 -4.31 16 29 H 0.05 0.78 6.88 -51.93 -0.36 0.42 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 33 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.61 6.77 -51.93 -0.35 0.26 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.17 7.75 -51.93 -0.40 0.77 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.32 7.98 -51.93 -0.41 0.90 16 45 H 0.06 1.21 8.04 -51.93 -0.42 0.80 16 46 H 0.08 1.74 7.19 -51.93 -0.37 1.37 16 47 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 50 H 0.13 1.31 8.14 -51.92 -0.42 0.88 16 51 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16 LS Contribution 408.68 15.07 6.16 6.16 Total: -1.00 -33.59 408.68 -8.45 -42.03 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.90 Total: 0.17 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.10 Total: 3.28 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.39 Total: -43.68 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.19 Total: -24.24 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.59 -8.45 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271198955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.831 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds