Wall clock time and date at job start Tue Mar 31 2020 20:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47321 * 2 1 4 4 C 1.53008 * 109.46683 * 119.99968 * 2 1 3 5 5 H 1.09004 * 109.46729 * 299.99340 * 4 2 1 6 6 C 1.53006 * 109.46683 * 179.97438 * 4 2 1 7 7 C 1.50693 * 109.47541 * 60.00043 * 4 2 1 8 8 O 1.21281 * 119.99760 * 36.47509 * 7 4 2 9 9 N 1.34778 * 119.99967 * 216.47997 * 7 4 2 10 10 C 1.47673 * 134.45074 * 355.05216 * 9 7 4 11 11 C 1.53404 * 85.95555 * 155.75290 * 10 9 7 12 12 C 1.47683 * 134.44888 * 175.04984 * 9 7 4 13 13 C 1.52546 * 113.81818 * 268.61434 * 11 10 9 14 14 N 1.46272 * 109.57247 * 273.92350 * 13 11 10 15 15 C 1.46498 * 118.71487 * 163.96561 * 14 13 11 16 16 C 1.52998 * 109.47405 * 270.02011 * 15 14 13 17 17 C 1.50703 * 109.47416 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99899 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99798 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00368 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46753 * 89.99825 * 21 19 17 23 23 H 1.48495 * 109.46846 * 209.99784 * 21 19 17 24 24 H 1.48492 * 109.46910 * 329.99973 * 21 19 17 25 25 C 1.33708 * 122.56696 * 343.99059 * 14 13 11 26 26 O 1.21283 * 118.38124 * 183.19086 * 25 14 13 27 27 C 1.50170 * 123.23973 * 3.16426 * 25 14 13 28 28 O 1.42676 * 113.76868 * 137.98487 * 11 10 9 29 29 H 1.08995 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46872 * 300.00358 * 1 2 3 31 31 H 1.08999 * 109.46753 * 60.00580 * 1 2 3 32 32 H 1.08997 * 109.47345 * 239.99069 * 2 1 3 33 33 H 1.08995 * 109.46915 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47013 * 299.99681 * 3 2 1 35 35 H 1.08993 * 109.47328 * 59.99636 * 3 2 1 36 36 H 1.09004 * 109.47276 * 66.04544 * 6 4 2 37 37 H 1.08999 * 109.46894 * 186.03921 * 6 4 2 38 38 H 1.08993 * 109.47184 * 306.04164 * 6 4 2 39 39 H 1.09006 * 113.80014 * 41.49503 * 10 9 7 40 40 H 1.08996 * 113.79817 * 270.00781 * 10 9 7 41 41 H 1.09000 * 113.79267 * 89.99053 * 12 9 7 42 42 H 1.08997 * 113.79722 * 318.51240 * 12 9 7 43 43 H 1.09000 * 109.44474 * 153.89965 * 13 11 10 44 44 H 1.09002 * 109.46641 * 33.95934 * 13 11 10 45 45 H 1.08998 * 109.47565 * 30.02462 * 15 14 13 46 46 H 1.09006 * 109.47253 * 150.02130 * 15 14 13 47 47 H 1.09007 * 109.47145 * 300.00540 * 16 15 14 48 48 H 1.09006 * 109.46817 * 59.99852 * 16 15 14 49 49 H 0.96997 * 119.99960 * 179.97438 * 20 19 17 50 50 H 1.09009 * 109.34953 * 222.15763 * 27 25 14 51 51 H 1.08994 * 109.23040 * 102.52876 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 3.5700 -0.7219 1.2490 7 6 1.5377 -2.1421 1.2494 8 8 1.4473 -2.7533 0.2058 9 7 1.1888 -2.7334 2.4092 10 6 1.2536 -2.3400 3.8311 11 6 0.1091 -3.3384 4.0471 12 6 0.5886 -4.0344 2.7671 13 6 -1.2797 -2.7186 3.9287 14 7 -1.6768 -2.1558 5.2191 15 6 -2.7956 -1.2110 5.2606 16 6 -2.2673 0.2134 5.0791 17 6 -3.4182 1.1854 5.1224 18 1 -4.4256 0.8235 5.2655 19 6 -3.1849 2.5367 4.9794 20 7 -1.9581 2.9776 4.8057 21 14 -4.6116 3.7415 5.0323 22 1 -4.8365 4.1810 6.4329 23 1 -4.2947 4.9213 4.1881 24 1 -5.8375 3.0798 4.5183 25 6 -1.0582 -2.4696 6.3622 26 8 -1.4872 -2.0039 7.3966 27 6 0.1413 -3.3707 6.4285 28 8 0.2535 -4.1330 5.2233 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 3.1300 1.4423 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6768 1.9563 0.8899 36 1 3.9338 0.3000 1.3570 37 1 3.9333 -1.3265 2.0800 38 1 3.9330 -1.1394 0.3100 39 1 0.9726 -1.3027 4.0137 40 1 2.1834 -2.6236 4.3240 41 1 1.3204 -4.8229 2.9429 42 1 -0.2203 -4.3427 2.1047 43 1 -1.9951 -3.4854 3.6315 44 1 -1.2621 -1.9285 3.1780 45 1 -3.4972 -1.4431 4.4593 46 1 -3.3030 -1.2906 6.2221 47 1 -1.5657 0.4456 5.8804 48 1 -1.7600 0.2930 4.1176 49 1 -1.7941 3.9282 4.7047 50 1 0.0376 -4.0483 7.2761 51 1 1.0384 -2.7653 6.5578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271198955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:23 Heat of formation + Delta-G solvation = -107.736890 kcal Electronic energy + Delta-G solvation = -31662.126757 eV Core-core repulsion = 27561.804154 eV Total energy + Delta-G solvation = -4100.322602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55469 -41.07946 -39.78498 -37.61951 -37.06672 -36.90283 -35.11202 -32.37170 -32.01028 -30.85359 -28.94338 -28.40321 -27.67272 -27.40742 -26.33642 -25.08245 -23.66692 -22.35115 -21.25758 -20.13110 -19.29521 -19.09522 -18.70033 -18.38483 -17.48606 -17.25300 -16.89424 -16.82262 -16.40777 -15.98807 -15.67531 -15.51222 -15.27950 -14.97370 -14.71795 -14.67619 -14.42211 -14.40020 -14.21674 -14.07672 -13.73400 -13.52436 -13.36270 -13.18304 -13.12732 -12.96276 -12.88171 -12.73121 -12.59957 -12.50889 -12.18662 -12.02182 -11.92373 -11.87349 -11.69910 -11.54398 -11.48195 -11.39110 -10.76685 -10.58821 -10.52074 -9.88261 -9.73449 -8.23411 -6.34334 1.38400 1.39868 1.42448 1.50612 1.51304 1.54409 1.86229 2.38442 2.40526 3.01450 3.10561 3.11703 3.27675 3.54736 3.62189 3.81872 3.89171 4.09683 4.13259 4.25258 4.26788 4.33063 4.35242 4.37880 4.44671 4.47285 4.51742 4.53129 4.55593 4.63156 4.67960 4.69999 4.73385 4.84427 4.88022 4.88953 4.96549 5.00456 5.10451 5.13864 5.20673 5.36596 5.42488 5.45123 5.54429 5.65213 5.79216 6.16118 6.38929 6.46951 6.78827 7.02281 7.03897 7.34620 8.88099 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007932 B = 0.004782 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.280147 B = 5854.050401 C = 8539.013908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C -0.145 4.145 4 C -0.103 4.103 5 H 0.085 0.915 6 C -0.134 4.134 7 C 0.551 3.449 8 O -0.571 6.571 9 N -0.644 5.644 10 C 0.082 3.918 11 C 0.066 3.934 12 C 0.138 3.862 13 C 0.111 3.889 14 N -0.599 5.599 15 C 0.126 3.874 16 C 0.032 3.968 17 C -0.544 4.544 18 H 0.061 0.939 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.961 3.039 22 H -0.276 1.276 23 H -0.280 1.280 24 H -0.262 1.262 25 C 0.471 3.529 26 O -0.589 6.589 27 C 0.062 3.938 28 O -0.340 6.340 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.059 0.941 47 H -0.020 1.020 48 H 0.000 1.000 49 H 0.264 0.736 50 H 0.155 0.845 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -12.690 -6.455 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.202 4.202 4 C -0.125 4.125 5 H 0.103 0.897 6 C -0.192 4.192 7 C 0.343 3.657 8 O -0.450 6.450 9 N -0.380 5.380 10 C -0.041 4.041 11 C 0.025 3.975 12 C 0.016 3.984 13 C -0.011 4.011 14 N -0.330 5.330 15 C 0.004 3.996 16 C -0.005 4.005 17 C -0.583 4.583 18 H 0.079 0.921 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.786 3.214 22 H -0.202 1.202 23 H -0.205 1.205 24 H -0.186 1.186 25 C 0.260 3.740 26 O -0.470 6.470 27 C -0.017 4.017 28 O -0.257 6.257 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.078 0.922 47 H -0.002 1.002 48 H 0.018 0.982 49 H 0.073 0.927 50 H 0.172 0.828 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.642 -12.758 -6.710 18.529 hybrid contribution -0.978 1.362 0.249 1.695 sum 10.664 -11.396 -6.462 16.892 Atomic orbital electron populations 1.21856 0.96003 1.00886 1.01872 1.20964 0.95089 0.96768 0.96581 1.21869 1.02037 0.94211 1.02099 1.21406 0.99166 0.90949 1.00940 0.89708 1.21737 0.90662 1.03998 1.02765 1.20577 0.75244 0.88746 0.81157 1.90666 1.55638 1.66914 1.31765 1.49777 1.63007 1.19546 1.05705 1.23976 0.99894 1.00384 0.79812 1.23221 0.93234 0.93175 0.87918 1.23161 0.98129 0.87398 0.89697 1.21822 0.95372 0.98860 0.85087 1.47702 1.33790 1.44071 1.07442 1.21510 0.87841 0.88614 1.01681 1.19097 0.95577 0.91281 0.94593 1.21492 0.94227 0.92442 1.50115 0.92115 1.25867 0.98390 1.00373 0.94481 1.70073 1.21388 1.14931 1.50077 0.85503 0.79500 0.78241 0.78171 1.20216 1.20489 1.18588 1.21703 0.86570 0.82687 0.83087 1.90739 1.66130 1.56175 1.33981 1.22887 0.94069 0.95242 0.89469 1.88116 1.92540 1.32695 1.12357 0.93992 0.93918 0.91617 0.90487 0.90562 0.91803 0.93408 0.89585 0.91671 0.91876 0.90440 0.85403 0.85792 0.88109 0.88288 0.90202 0.89968 0.92244 1.00170 0.98189 0.92746 0.82787 0.86970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.94 71.98 0.64 -3.44 16 2 C -0.08 -1.78 2.20 -10.79 -0.02 -1.81 16 3 C -0.15 -2.98 8.84 71.98 0.64 -2.34 16 4 C -0.10 -2.37 2.19 -11.54 -0.03 -2.40 16 5 H 0.08 2.08 7.46 -2.38 -0.02 2.07 16 6 C -0.13 -2.35 8.64 71.98 0.62 -1.73 16 7 C 0.55 14.30 5.96 87.65 0.52 14.82 16 8 O -0.57 -18.26 16.56 -3.03 -0.05 -18.31 16 9 N -0.64 -13.95 3.50 -850.28 -2.98 -16.93 16 10 C 0.08 1.60 7.10 86.29 0.61 2.21 16 11 C 0.07 1.31 1.21 -10.64 -0.01 1.30 16 12 C 0.14 2.39 8.25 86.28 0.71 3.10 16 13 C 0.11 2.84 5.75 86.27 0.50 3.34 16 14 N -0.60 -20.18 2.84 -825.55 -2.34 -22.52 16 15 C 0.13 5.26 5.26 86.38 0.45 5.71 16 16 C 0.03 1.69 5.29 29.85 0.16 1.85 16 17 C -0.54 -30.69 9.11 25.60 0.23 -30.45 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 21 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 C 0.47 15.80 7.58 87.66 0.66 16.46 16 26 O -0.59 -25.66 16.28 -3.04 -0.05 -25.71 16 27 C 0.06 1.31 6.67 71.07 0.47 1.78 16 28 O -0.34 -6.47 10.66 -148.98 -1.59 -8.06 16 29 H 0.04 1.23 6.88 -2.39 -0.02 1.22 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.88 7.86 -2.39 -0.02 1.86 16 33 H 0.08 1.26 6.57 -2.39 -0.02 1.24 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.28 6.77 -2.38 -0.02 1.26 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.86 7.75 -2.38 -0.02 1.84 16 40 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 43 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.29 7.98 -2.39 -0.02 2.27 16 45 H 0.08 3.11 8.04 -2.39 -0.02 3.09 16 46 H 0.06 2.72 7.19 -2.38 -0.02 2.70 16 47 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 48 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 49 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 50 H 0.15 2.61 8.14 -2.38 -0.02 2.59 16 51 H 0.11 1.94 7.92 -2.39 -0.02 1.92 16 Total: -1.00 -75.37 408.68 2.83 -72.53 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.90 Total: 18.44 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.63 Total: 9.29 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -5.03 Total: -94.16 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -1.69 Total: -52.07 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.37 2.83 -72.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271198955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.202 kcal (2) G-P(sol) polarization free energy of solvation -75.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds