Wall clock time and date at job start Tue Mar 31 2020 20:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47453 * 2 1 4 4 C 1.53001 * 109.46823 * 119.99716 * 2 1 3 5 5 H 1.09001 * 109.47508 * 299.99664 * 4 2 1 6 6 C 1.53002 * 109.47270 * 60.00002 * 4 2 1 7 7 C 1.50706 * 109.47163 * 180.02562 * 4 2 1 8 8 O 1.21287 * 119.99726 * 323.20824 * 7 4 2 9 9 N 1.34774 * 120.00254 * 143.21565 * 7 4 2 10 10 C 1.47165 * 136.00115 * 354.80223 * 9 7 4 11 11 C 1.52945 * 87.92806 * 206.61321 * 10 9 7 12 12 C 1.47158 * 136.00325 * 174.76711 * 9 7 4 13 13 C 1.52645 * 114.04713 * 87.89687 * 11 10 9 14 14 O 1.43403 * 108.25845 * 178.01611 * 13 11 10 15 15 C 1.42816 * 113.35327 * 294.60389 * 14 13 11 16 16 C 1.50277 * 110.54361 * 51.37674 * 15 14 13 17 17 O 1.21276 * 118.99990 * 161.41711 * 16 15 14 18 18 N 1.34323 * 122.00358 * 341.41983 * 16 15 14 19 19 C 1.46499 * 119.40967 * 182.01543 * 18 16 15 20 20 C 1.52995 * 109.47091 * 85.37161 * 19 18 16 21 21 C 1.50708 * 109.46895 * 176.67296 * 20 19 18 22 22 H 1.07995 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99561 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00553 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99971 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46591 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47103 * 119.99534 * 25 23 21 28 28 H 1.48490 * 109.47330 * 240.00132 * 25 23 21 29 29 H 1.08999 * 109.47252 * 300.00464 * 1 2 3 30 30 H 1.09006 * 109.47081 * 60.00465 * 1 2 3 31 31 H 1.09001 * 109.47528 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 239.99051 * 2 1 3 33 33 H 1.09001 * 109.47791 * 59.99534 * 3 2 1 34 34 H 1.09001 * 109.47239 * 180.02562 * 3 2 1 35 35 H 1.09011 * 109.47061 * 299.99739 * 3 2 1 36 36 H 1.09001 * 109.47016 * 54.66124 * 6 4 2 37 37 H 1.08997 * 109.47073 * 174.66013 * 6 4 2 38 38 H 1.08997 * 109.46822 * 294.65759 * 6 4 2 39 39 H 1.09001 * 113.49139 * 321.39347 * 10 9 7 40 40 H 1.09004 * 113.48390 * 91.83428 * 10 9 7 41 41 H 1.09006 * 113.48700 * 268.10061 * 12 9 7 42 42 H 1.08991 * 113.49593 * 38.54763 * 12 9 7 43 43 H 1.08997 * 109.70946 * 297.71023 * 13 11 10 44 44 H 1.09005 * 109.70922 * 58.32662 * 13 11 10 45 45 H 1.09000 * 109.26207 * 171.64625 * 15 14 13 46 46 H 1.08999 * 109.26946 * 291.10152 * 15 14 13 47 47 H 1.09002 * 109.47105 * 205.37274 * 19 18 16 48 48 H 1.09004 * 109.46911 * 325.36896 * 19 18 16 49 49 H 1.09000 * 109.47391 * 296.66766 * 20 19 18 50 50 H 1.09000 * 109.47016 * 56.67097 * 20 19 18 51 51 H 0.97004 * 120.00541 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5299 -2.1637 1.2494 7 6 3.5469 -0.7207 1.2497 8 8 4.1536 -0.8446 0.2068 9 7 4.2205 -0.5827 2.4089 10 6 3.8678 -0.3226 3.8137 11 6 5.2569 0.2924 3.9907 12 6 5.6313 -0.6267 2.8252 13 6 5.3259 1.7800 3.6555 14 8 6.6621 2.2358 3.9074 15 6 7.0288 2.1796 5.2866 16 6 6.7460 0.8164 5.8523 17 8 7.2928 0.4822 6.8819 18 7 5.9060 -0.0431 5.2524 19 6 5.6374 -1.3407 5.8770 20 6 4.5122 -1.1899 6.9026 21 6 4.1801 -2.5392 7.4860 22 1 4.7175 -3.4165 7.1578 23 6 3.1894 -2.6536 8.4380 24 7 2.5345 -1.5853 8.8374 25 14 2.7772 -4.3261 9.1608 26 1 3.6518 -5.3588 8.5490 27 1 2.9970 -4.2987 10.6291 28 1 1.3558 -4.6505 8.8790 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.8131 -2.6493 0.3155 37 1 1.9691 -2.7043 2.0877 38 1 0.4441 -2.1651 1.3450 39 1 3.0564 0.3956 3.9322 40 1 3.7165 -1.2298 4.3988 41 1 5.9601 -1.6165 3.1421 42 1 6.3106 -0.1665 2.1078 43 1 5.0777 1.9320 2.6051 44 1 4.6252 2.3311 4.2828 45 1 8.0925 2.3961 5.3849 46 1 6.4581 2.9245 5.8411 47 1 5.3381 -2.0572 5.1120 48 1 6.5385 -1.6973 6.3760 49 1 4.8340 -0.5190 7.6991 50 1 3.6289 -0.7775 6.4148 51 1 1.8378 -1.6658 9.5075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271200194.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:26 Heat of formation + Delta-G solvation = -104.920562 kcal Electronic energy + Delta-G solvation = -31591.523403 eV Core-core repulsion = 27491.322925 eV Total energy + Delta-G solvation = -4100.200477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.73721 -40.99146 -39.59599 -38.49854 -37.06259 -36.38006 -34.91900 -32.37282 -31.81393 -30.87116 -29.10317 -28.32888 -27.69907 -27.35294 -25.95128 -25.10241 -23.34910 -22.94766 -21.30065 -19.86719 -19.49877 -19.19628 -18.58143 -18.26294 -17.64012 -17.26628 -16.70353 -16.63860 -16.47384 -15.95793 -15.84033 -15.50027 -15.36173 -14.98451 -14.81830 -14.60304 -14.48653 -14.30819 -14.22106 -13.73856 -13.69239 -13.48255 -13.33937 -13.09078 -12.94147 -12.89209 -12.81582 -12.69331 -12.52732 -12.48598 -12.23565 -11.95487 -11.89097 -11.81586 -11.62118 -11.53233 -11.46999 -11.35379 -10.82601 -10.56476 -10.52539 -9.88734 -9.71154 -8.21143 -6.31633 1.37600 1.39511 1.42216 1.44282 1.49401 1.53498 2.02427 2.41336 2.56106 3.11907 3.13504 3.14712 3.32095 3.48831 3.61503 3.71743 3.94862 4.09525 4.15704 4.20315 4.28433 4.35812 4.39593 4.42791 4.46439 4.50100 4.51100 4.56257 4.60391 4.63905 4.65638 4.76834 4.83215 4.87400 4.89367 4.91486 5.03512 5.05940 5.12759 5.16816 5.30007 5.44326 5.47995 5.51285 5.58218 5.68235 5.83662 6.18459 6.33048 6.57041 6.82280 7.00619 7.03420 7.37659 8.90459 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008465 B = 0.004326 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.852929 B = 6471.270980 C = 8907.245419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.149 4.149 4 C -0.098 4.098 5 H 0.103 0.897 6 C -0.140 4.140 7 C 0.554 3.446 8 O -0.574 6.574 9 N -0.638 5.638 10 C 0.099 3.901 11 C 0.101 3.899 12 C 0.098 3.902 13 C 0.081 3.919 14 O -0.366 6.366 15 C 0.058 3.942 16 C 0.477 3.523 17 O -0.579 6.579 18 N -0.583 5.583 19 C 0.129 3.871 20 C 0.028 3.972 21 C -0.541 4.541 22 H 0.060 0.940 23 C 0.011 3.989 24 N -0.926 5.926 25 Si 0.958 3.042 26 H -0.264 1.264 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.091 0.909 45 H 0.149 0.851 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.054 0.946 49 H -0.021 1.021 50 H 0.017 0.983 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 8.087 -16.994 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.206 4.206 4 C -0.119 4.119 5 H 0.121 0.879 6 C -0.198 4.198 7 C 0.346 3.654 8 O -0.453 6.453 9 N -0.373 5.373 10 C -0.025 4.025 11 C 0.013 3.987 12 C -0.026 4.026 13 C 0.004 3.996 14 O -0.284 6.284 15 C -0.021 4.021 16 C 0.266 3.734 17 O -0.459 6.459 18 N -0.314 5.314 19 C 0.007 3.993 20 C -0.010 4.010 21 C -0.579 4.579 22 H 0.078 0.922 23 C -0.188 4.188 24 N -0.566 5.566 25 Si 0.783 3.217 26 H -0.188 1.188 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.151 0.849 44 H 0.109 0.891 45 H 0.166 0.834 46 H 0.130 0.870 47 H 0.102 0.898 48 H 0.073 0.927 49 H -0.003 1.003 50 H 0.035 0.965 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.348 7.947 -17.271 19.157 hybrid contribution -0.180 -1.301 1.193 1.774 sum -2.528 6.647 -16.079 17.581 Atomic orbital electron populations 1.21870 0.92829 1.02693 1.02749 1.20990 0.97040 0.95988 0.95729 1.21871 1.00186 0.95665 1.02862 1.21433 0.88694 0.99819 1.01959 0.87930 1.21764 1.03013 0.92972 1.02010 1.20739 0.90504 0.73725 0.80469 1.90675 1.71292 1.51779 1.31589 1.49506 1.09483 1.71271 1.07031 1.23509 0.97267 1.01652 0.80049 1.22497 0.94500 0.98209 0.83486 1.23367 0.84927 1.00019 0.94299 1.22789 0.84833 0.87369 1.04606 1.88170 1.31040 1.85182 1.23971 1.22864 1.05579 0.90898 0.82787 1.21954 0.78208 0.88857 0.84385 1.90742 1.51730 1.77601 1.25847 1.47639 1.44093 1.17769 1.21919 1.21509 0.98857 0.83049 0.95859 1.19212 0.92962 0.95796 0.93046 1.21511 1.18864 0.94468 1.23079 0.92207 1.25794 0.95986 1.00244 0.96768 1.70076 1.24396 1.30430 1.31680 0.85512 0.78327 0.79901 0.77995 1.18811 1.21026 1.19922 0.91764 0.91588 0.91754 0.91739 0.91490 0.94404 0.91465 0.92462 0.93095 0.88891 0.87200 0.88857 0.89765 0.89011 0.84943 0.89067 0.83384 0.87026 0.89798 0.92733 1.00304 0.96482 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.84 71.98 0.64 -1.22 16 2 C -0.08 -1.37 2.20 -10.80 -0.02 -1.40 16 3 C -0.15 -2.48 8.93 71.98 0.64 -1.84 16 4 C -0.10 -1.92 2.25 -11.54 -0.03 -1.95 16 5 H 0.10 1.76 7.58 -2.39 -0.02 1.74 16 6 C -0.14 -2.64 8.66 71.98 0.62 -2.02 16 7 C 0.55 14.23 5.97 87.66 0.52 14.75 16 8 O -0.57 -18.68 16.63 -3.05 -0.05 -18.74 16 9 N -0.64 -15.48 3.51 -857.38 -3.01 -18.49 16 10 C 0.10 2.40 6.46 83.30 0.54 2.94 16 11 C 0.10 2.49 1.64 3.84 0.01 2.50 16 12 C 0.10 2.44 7.68 83.35 0.64 3.08 16 13 C 0.08 1.56 6.06 71.86 0.44 2.00 16 14 O -0.37 -7.85 10.84 -148.98 -1.62 -9.46 16 15 C 0.06 1.31 6.93 71.10 0.49 1.80 16 16 C 0.48 16.11 7.61 87.60 0.67 16.78 16 17 O -0.58 -25.29 16.53 -3.02 -0.05 -25.34 16 18 N -0.58 -19.00 2.69 -779.90 -2.10 -21.09 16 19 C 0.13 5.10 4.31 86.38 0.37 5.48 16 20 C 0.03 1.37 4.96 29.85 0.15 1.52 16 21 C -0.54 -29.22 9.11 25.60 0.23 -28.98 16 22 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 23 C 0.01 0.60 5.46 84.65 0.46 1.06 16 24 N -0.93 -53.72 13.29 21.45 0.28 -53.44 16 25 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 26 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.77 6.55 -2.39 -0.02 0.76 16 32 H 0.06 1.36 7.86 -2.39 -0.02 1.34 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.04 0.78 6.89 -2.39 -0.02 0.76 16 35 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.36 6.73 -2.39 -0.02 1.34 16 39 H 0.11 2.19 7.94 -2.39 -0.02 2.17 16 40 H 0.09 2.77 5.39 -2.38 -0.01 2.76 16 41 H 0.08 2.22 7.17 -2.38 -0.02 2.20 16 42 H 0.09 2.21 8.11 -2.39 -0.02 2.19 16 43 H 0.13 2.18 7.92 -2.39 -0.02 2.16 16 44 H 0.09 1.50 8.13 -2.38 -0.02 1.48 16 45 H 0.15 2.81 8.14 -2.39 -0.02 2.80 16 46 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.08 3.00 5.95 -2.39 -0.01 2.99 16 48 H 0.05 2.40 7.45 -2.39 -0.02 2.38 16 49 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 50 H 0.02 0.83 6.77 -2.39 -0.02 0.82 16 51 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -72.75 401.23 2.77 -69.98 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.91 Total: 17.27 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.37 Total: 14.50 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -4.82 Total: -93.02 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -1.72 Total: -53.53 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -72.75 2.77 -69.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271200194.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.938 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds