Wall clock time and date at job start Tue Mar 31 2020 20:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47040 * 2 1 4 4 C 1.53002 * 109.47033 * 119.99981 * 2 1 3 5 5 H 1.09001 * 109.47278 * 300.00171 * 4 2 1 6 6 C 1.52998 * 109.46807 * 180.02562 * 4 2 1 7 7 C 1.50703 * 109.47196 * 60.00418 * 4 2 1 8 8 O 1.21276 * 119.99824 * 35.57854 * 7 4 2 9 9 N 1.34778 * 119.99695 * 215.58613 * 7 4 2 10 10 C 1.47663 * 134.45605 * 175.07287 * 9 7 4 11 11 C 1.53484 * 85.98720 * 155.70519 * 10 9 7 12 12 C 1.47661 * 134.46043 * 355.11356 * 9 7 4 13 13 C 1.52763 * 113.56116 * 137.64237 * 11 10 9 14 14 O 1.43380 * 108.26061 * 176.82835 * 13 11 10 15 15 C 1.42817 * 113.34534 * 294.38427 * 14 13 11 16 16 C 1.50280 * 110.49588 * 51.29897 * 15 14 13 17 17 O 1.21282 * 118.97211 * 161.32345 * 16 15 14 18 18 N 1.34268 * 122.05503 * 341.60324 * 16 15 14 19 19 C 1.46500 * 119.37941 * 181.96058 * 18 16 15 20 20 C 1.53006 * 109.46949 * 83.79603 * 19 18 16 21 21 C 1.50703 * 109.46966 * 185.24540 * 20 19 18 22 22 H 1.07997 * 119.99800 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99782 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99835 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47066 * 60.00098 * 25 23 21 27 27 H 1.48494 * 109.47261 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47155 * 300.00139 * 25 23 21 29 29 H 1.09001 * 109.47229 * 299.99818 * 1 2 3 30 30 H 1.08989 * 109.47194 * 60.00494 * 1 2 3 31 31 H 1.09005 * 109.46725 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47088 * 239.99911 * 2 1 3 33 33 H 1.09001 * 109.46961 * 60.00018 * 3 2 1 34 34 H 1.08999 * 109.46808 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47153 * 300.00172 * 3 2 1 36 36 H 1.09004 * 109.47020 * 65.91913 * 6 4 2 37 37 H 1.09002 * 109.47036 * 185.91037 * 6 4 2 38 38 H 1.08998 * 109.47636 * 305.91171 * 6 4 2 39 39 H 1.09002 * 113.78967 * 41.43834 * 10 9 7 40 40 H 1.08997 * 113.78971 * 269.97531 * 10 9 7 41 41 H 1.08996 * 113.79174 * 90.01940 * 12 9 7 42 42 H 1.09000 * 113.78901 * 318.55798 * 12 9 7 43 43 H 1.09005 * 109.70467 * 57.13539 * 13 11 10 44 44 H 1.09002 * 109.74195 * 296.54219 * 13 11 10 45 45 H 1.09006 * 109.26788 * 291.04016 * 15 14 13 46 46 H 1.08994 * 109.27237 * 171.56211 * 15 14 13 47 47 H 1.08996 * 109.47387 * 203.79295 * 19 18 16 48 48 H 1.09002 * 109.47382 * 323.79889 * 19 18 16 49 49 H 1.08996 * 109.46931 * 305.24281 * 20 19 18 50 50 H 1.08997 * 109.47000 * 65.24483 * 20 19 18 51 51 H 0.97001 * 119.99399 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2075 2.1393 6 6 3.5700 -0.7207 1.2495 7 6 1.5378 -2.1421 1.2492 8 8 1.4320 -2.7478 0.2039 9 7 1.2060 -2.7396 2.4109 10 6 0.6116 -4.0425 2.7710 11 6 1.3006 -3.8594 4.1302 12 6 1.2906 -2.3534 3.8336 13 6 0.4232 -4.2525 5.3174 14 8 1.1978 -4.1092 6.5154 15 6 2.2955 -5.0196 6.5919 16 6 3.1178 -4.9591 5.3355 17 8 4.2510 -5.3909 5.3537 18 7 2.6390 -4.4370 4.1949 19 6 3.4763 -4.4470 2.9928 20 6 3.3470 -5.8013 2.2925 21 6 4.3042 -5.8589 1.1299 22 1 4.9406 -5.0140 0.9120 23 6 4.3666 -6.9899 0.3438 24 7 3.5912 -8.0186 0.6089 25 14 5.5524 -7.0612 -1.0977 26 1 6.9425 -6.8903 -0.6041 27 1 5.4262 -8.3751 -1.7780 28 1 5.2309 -5.9745 -2.0574 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.9329 0.3017 1.3557 37 1 3.9334 -1.3234 2.0819 38 1 3.9338 -1.1398 0.3114 39 1 1.0005 -4.8788 2.1900 40 1 -0.4769 -4.0294 2.8244 41 1 0.4038 -1.8383 4.2029 42 1 2.2192 -1.8471 4.0973 43 1 0.1014 -5.2884 5.2095 44 1 -0.4486 -3.5998 5.3630 45 1 1.9145 -6.0323 6.7241 46 1 2.9217 -4.7572 7.4446 47 1 3.1511 -3.6561 2.3169 48 1 4.5164 -4.2807 3.2730 49 1 3.5830 -6.5986 2.9972 50 1 2.3269 -5.9269 1.9298 51 1 3.6348 -8.8141 0.0556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271200197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:29 Heat of formation + Delta-G solvation = -77.474052 kcal Electronic energy + Delta-G solvation = -32285.250512 eV Core-core repulsion = 28186.240204 eV Total energy + Delta-G solvation = -4099.010307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49936 -39.65303 -38.20604 -37.41622 -35.92927 -34.46995 -32.87030 -31.32342 -30.38883 -29.72897 -27.90660 -27.29720 -26.38318 -26.18341 -24.26802 -23.96343 -22.09619 -21.10328 -20.39307 -18.84096 -18.36056 -17.66462 -17.22133 -16.53798 -16.20566 -15.96145 -15.59861 -15.41698 -14.97365 -14.59408 -14.53019 -14.25290 -14.15394 -13.86674 -13.57997 -13.45366 -13.09294 -12.92631 -12.66610 -12.58378 -12.37902 -12.25201 -12.20122 -12.09796 -11.78659 -11.59758 -11.49402 -11.42349 -11.06938 -10.93024 -10.84516 -10.76505 -10.70649 -10.60407 -10.43324 -9.91575 -9.85341 -9.51870 -9.29327 -8.98708 -8.54970 -8.27530 -8.16421 -5.95849 -3.97048 2.74605 2.82349 2.87016 3.05379 3.39447 3.41849 3.45842 3.54456 4.25851 4.31459 4.34635 4.52421 4.57433 4.63274 4.77129 4.82675 5.04445 5.06474 5.22006 5.25127 5.27675 5.29771 5.36452 5.38924 5.41477 5.43696 5.47252 5.52250 5.66809 5.69507 5.73461 5.79495 5.84752 5.88443 5.97650 6.07765 6.09215 6.16964 6.27470 6.34185 6.49915 6.56663 6.77687 6.86941 7.57727 7.69453 7.79700 7.88284 8.02089 8.35275 8.39448 8.46435 9.06425 9.65993 11.15910 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007172 B = 0.005876 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3903.057201 B = 4763.900275 C = 7611.845359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.097 4.097 5 H 0.083 0.917 6 C -0.144 4.144 7 C 0.542 3.458 8 O -0.518 6.518 9 N -0.641 5.641 10 C 0.094 3.906 11 C 0.103 3.897 12 C 0.098 3.902 13 C 0.064 3.936 14 O -0.369 6.369 15 C 0.048 3.952 16 C 0.483 3.517 17 O -0.527 6.527 18 N -0.576 5.576 19 C 0.111 3.889 20 C 0.020 3.980 21 C -0.513 4.513 22 H 0.052 0.948 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.020 0.980 50 H 0.017 0.983 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 16.815 9.214 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C -0.203 4.203 4 C -0.118 4.118 5 H 0.101 0.899 6 C -0.201 4.201 7 C 0.331 3.669 8 O -0.392 6.392 9 N -0.378 5.378 10 C -0.029 4.029 11 C 0.014 3.986 12 C -0.027 4.027 13 C -0.014 4.014 14 O -0.287 6.287 15 C -0.032 4.032 16 C 0.270 3.730 17 O -0.403 6.403 18 N -0.308 5.308 19 C -0.009 4.009 20 C -0.018 4.018 21 C -0.552 4.552 22 H 0.071 0.929 23 C -0.140 4.140 24 N -0.534 5.534 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.106 0.894 46 H 0.146 0.854 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.038 0.962 50 H 0.035 0.965 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.817 16.314 8.518 20.859 hybrid contribution 0.591 -0.344 -1.029 1.236 sum -9.227 15.971 7.488 19.907 Atomic orbital electron populations 1.21865 0.95155 1.02211 1.01345 1.21014 0.95876 0.95720 0.97512 1.21877 1.01381 0.95435 1.01641 1.21305 0.97893 0.92430 1.00191 0.89873 1.21780 0.92486 1.02350 1.03510 1.20248 0.76972 0.87874 0.81761 1.90774 1.52789 1.65355 1.30269 1.49967 1.63258 1.19192 1.05371 1.23693 0.98198 0.88664 0.92327 1.22212 0.85610 0.94133 0.96632 1.23672 1.02881 0.96306 0.79823 1.22910 0.93230 1.02975 0.82240 1.88112 1.41807 1.58853 1.39925 1.22822 0.88029 0.95618 0.96681 1.20953 0.88252 0.78427 0.85361 1.90780 1.18707 1.46143 1.84680 1.47561 1.13841 1.57792 1.11613 1.22082 0.93430 1.02119 0.83316 1.19399 0.97103 0.90462 0.94831 1.20951 1.21440 1.00579 1.12218 0.92928 1.24931 0.95855 0.95596 0.97620 1.69947 1.39005 1.04974 1.39476 0.86649 0.81511 0.77177 0.82680 1.20217 1.21256 1.20145 0.93093 0.92541 0.92284 0.89754 0.92810 0.92182 0.92525 0.91416 0.92147 0.91341 0.86986 0.88822 0.88607 0.89570 0.90905 0.86383 0.89409 0.85443 0.90710 0.91323 0.96197 0.96496 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.93 37.16 0.33 -1.28 16 2 C -0.08 -0.95 2.20 -90.61 -0.20 -1.14 16 3 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 4 C -0.10 -1.18 2.18 -91.77 -0.20 -1.38 16 5 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 6 C -0.14 -1.78 8.64 37.16 0.32 -1.46 16 7 C 0.54 8.73 4.95 -10.98 -0.05 8.68 16 8 O -0.52 -10.89 16.50 5.56 0.09 -10.79 16 9 N -0.64 -9.04 2.19 -180.47 -0.39 -9.44 16 10 C 0.09 1.32 7.58 -3.16 -0.02 1.29 16 11 C 0.10 1.30 1.56 -135.78 -0.21 1.09 16 12 C 0.10 1.03 7.49 -3.15 -0.02 1.01 16 13 C 0.06 0.60 6.09 37.04 0.23 0.83 16 14 O -0.37 -4.00 10.84 -35.23 -0.38 -4.38 16 15 C 0.05 0.58 6.94 35.80 0.25 0.83 16 16 C 0.48 8.45 7.57 -11.42 -0.09 8.37 16 17 O -0.53 -11.67 16.55 5.56 0.09 -11.57 16 18 N -0.58 -9.91 2.67 -162.66 -0.43 -10.34 16 19 C 0.11 2.39 4.49 -4.04 -0.02 2.38 16 20 C 0.02 0.52 5.10 -27.88 -0.14 0.38 16 21 C -0.51 -15.23 9.11 -34.44 -0.31 -15.54 16 22 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 23 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 24 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 25 Si 0.89 22.91 29.54 -169.99 -5.02 17.89 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.55 8.14 -51.94 -0.42 0.13 16 31 H 0.06 0.77 6.84 -51.93 -0.36 0.42 16 32 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.66 6.76 -51.93 -0.35 0.31 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.11 2.11 5.30 -51.93 -0.28 1.83 16 40 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.10 0.68 7.90 -51.93 -0.41 0.27 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 44 H 0.12 0.70 7.86 -51.93 -0.41 0.29 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.07 1.57 5.02 -51.93 -0.26 1.31 16 48 H 0.07 1.61 7.49 -51.93 -0.39 1.22 16 49 H 0.02 0.59 8.13 -51.93 -0.42 0.17 16 50 H 0.02 0.47 5.81 -51.93 -0.30 0.17 16 51 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 398.84 15.07 6.01 6.01 Total: -1.00 -37.48 398.84 -7.73 -45.21 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.51 Total: -0.34 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 0.09 Total: 4.82 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.09 Total: -46.85 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.20 Total: -26.75 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.48 -7.73 -45.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271200197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.260 kcal (2) G-P(sol) polarization free energy of solvation -37.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds