Wall clock time and date at job start Tue Mar 31 2020 20:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47040 * 2 1 4 4 C 1.53002 * 109.47033 * 119.99981 * 2 1 3 5 5 H 1.09001 * 109.47278 * 300.00171 * 4 2 1 6 6 C 1.52998 * 109.46807 * 180.02562 * 4 2 1 7 7 C 1.50703 * 109.47196 * 60.00418 * 4 2 1 8 8 O 1.21276 * 119.99824 * 35.57854 * 7 4 2 9 9 N 1.34778 * 119.99695 * 215.58613 * 7 4 2 10 10 C 1.47663 * 134.45605 * 175.07287 * 9 7 4 11 11 C 1.53484 * 85.98720 * 155.70519 * 10 9 7 12 12 C 1.47661 * 134.46043 * 355.11356 * 9 7 4 13 13 C 1.52763 * 113.56116 * 137.64237 * 11 10 9 14 14 O 1.43380 * 108.26061 * 176.82835 * 13 11 10 15 15 C 1.42817 * 113.34534 * 294.38427 * 14 13 11 16 16 C 1.50280 * 110.49588 * 51.29897 * 15 14 13 17 17 O 1.21282 * 118.97211 * 161.32345 * 16 15 14 18 18 N 1.34268 * 122.05503 * 341.60324 * 16 15 14 19 19 C 1.46500 * 119.37941 * 181.96058 * 18 16 15 20 20 C 1.53006 * 109.46949 * 83.79603 * 19 18 16 21 21 C 1.50703 * 109.46966 * 185.24540 * 20 19 18 22 22 H 1.07997 * 119.99800 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99782 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99835 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47066 * 60.00098 * 25 23 21 27 27 H 1.48494 * 109.47261 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47155 * 300.00139 * 25 23 21 29 29 H 1.09001 * 109.47229 * 299.99818 * 1 2 3 30 30 H 1.08989 * 109.47194 * 60.00494 * 1 2 3 31 31 H 1.09005 * 109.46725 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47088 * 239.99911 * 2 1 3 33 33 H 1.09001 * 109.46961 * 60.00018 * 3 2 1 34 34 H 1.08999 * 109.46808 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47153 * 300.00172 * 3 2 1 36 36 H 1.09004 * 109.47020 * 65.91913 * 6 4 2 37 37 H 1.09002 * 109.47036 * 185.91037 * 6 4 2 38 38 H 1.08998 * 109.47636 * 305.91171 * 6 4 2 39 39 H 1.09002 * 113.78967 * 41.43834 * 10 9 7 40 40 H 1.08997 * 113.78971 * 269.97531 * 10 9 7 41 41 H 1.08996 * 113.79174 * 90.01940 * 12 9 7 42 42 H 1.09000 * 113.78901 * 318.55798 * 12 9 7 43 43 H 1.09005 * 109.70467 * 57.13539 * 13 11 10 44 44 H 1.09002 * 109.74195 * 296.54219 * 13 11 10 45 45 H 1.09006 * 109.26788 * 291.04016 * 15 14 13 46 46 H 1.08994 * 109.27237 * 171.56211 * 15 14 13 47 47 H 1.08996 * 109.47387 * 203.79295 * 19 18 16 48 48 H 1.09002 * 109.47382 * 323.79889 * 19 18 16 49 49 H 1.08996 * 109.46931 * 305.24281 * 20 19 18 50 50 H 1.08997 * 109.47000 * 65.24483 * 20 19 18 51 51 H 0.97001 * 119.99399 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2075 2.1393 6 6 3.5700 -0.7207 1.2495 7 6 1.5378 -2.1421 1.2492 8 8 1.4320 -2.7478 0.2039 9 7 1.2060 -2.7396 2.4109 10 6 0.6116 -4.0425 2.7710 11 6 1.3006 -3.8594 4.1302 12 6 1.2906 -2.3534 3.8336 13 6 0.4232 -4.2525 5.3174 14 8 1.1978 -4.1092 6.5154 15 6 2.2955 -5.0196 6.5919 16 6 3.1178 -4.9591 5.3355 17 8 4.2510 -5.3909 5.3537 18 7 2.6390 -4.4370 4.1949 19 6 3.4763 -4.4470 2.9928 20 6 3.3470 -5.8013 2.2925 21 6 4.3042 -5.8589 1.1299 22 1 4.9406 -5.0140 0.9120 23 6 4.3666 -6.9899 0.3438 24 7 3.5912 -8.0186 0.6089 25 14 5.5524 -7.0612 -1.0977 26 1 6.9425 -6.8903 -0.6041 27 1 5.4262 -8.3751 -1.7780 28 1 5.2309 -5.9745 -2.0574 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.9329 0.3017 1.3557 37 1 3.9334 -1.3234 2.0819 38 1 3.9338 -1.1398 0.3114 39 1 1.0005 -4.8788 2.1900 40 1 -0.4769 -4.0294 2.8244 41 1 0.4038 -1.8383 4.2029 42 1 2.2192 -1.8471 4.0973 43 1 0.1014 -5.2884 5.2095 44 1 -0.4486 -3.5998 5.3630 45 1 1.9145 -6.0323 6.7241 46 1 2.9217 -4.7572 7.4446 47 1 3.1511 -3.6561 2.3169 48 1 4.5164 -4.2807 3.2730 49 1 3.5830 -6.5986 2.9972 50 1 2.3269 -5.9269 1.9298 51 1 3.6348 -8.8141 0.0556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271200197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:28 Heat of formation + Delta-G solvation = -104.571287 kcal Electronic energy + Delta-G solvation = -32286.425536 eV Core-core repulsion = 28186.240204 eV Total energy + Delta-G solvation = -4100.185331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.66752 -40.87531 -39.46615 -38.44268 -37.01670 -36.22047 -34.88233 -32.55494 -31.84266 -31.02617 -29.08351 -28.26908 -27.46053 -27.31666 -26.02911 -24.96942 -23.45558 -22.90499 -21.38410 -19.96480 -19.56668 -18.96515 -18.45868 -18.29499 -17.47954 -17.19814 -16.85098 -16.72321 -16.48390 -16.06212 -15.56390 -15.50426 -15.40049 -14.94513 -14.84289 -14.58784 -14.39876 -14.37406 -14.14521 -13.77549 -13.64910 -13.48191 -13.35873 -13.13167 -12.96296 -12.93783 -12.84780 -12.70018 -12.58766 -12.46120 -12.30267 -11.96956 -11.93518 -11.84643 -11.64218 -11.56244 -11.50374 -11.37616 -10.76746 -10.65886 -10.36629 -9.86061 -9.56800 -8.30999 -6.41386 1.27211 1.32515 1.38659 1.41926 1.63200 1.76242 1.77788 2.32159 2.64056 3.02451 3.20853 3.27725 3.33924 3.62551 3.65619 3.80547 3.93322 4.13215 4.17823 4.24134 4.34541 4.36902 4.42667 4.47087 4.49820 4.51879 4.52998 4.56180 4.67855 4.74082 4.74632 4.78322 4.81826 4.82793 4.85797 4.89245 5.01119 5.05030 5.10912 5.15509 5.27803 5.37416 5.42320 5.49412 5.50271 5.70115 5.76517 6.08994 6.39821 6.68097 6.70203 7.02498 7.19421 7.26336 8.80978 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007172 B = 0.005876 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3903.057201 B = 4763.900275 C = 7611.845359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.089 4.089 5 H 0.120 0.880 6 C -0.141 4.141 7 C 0.532 3.468 8 O -0.585 6.585 9 N -0.647 5.647 10 C 0.087 3.913 11 C 0.093 3.907 12 C 0.111 3.889 13 C 0.068 3.932 14 O -0.358 6.358 15 C 0.064 3.936 16 C 0.472 3.528 17 O -0.586 6.586 18 N -0.580 5.580 19 C 0.136 3.864 20 C 0.036 3.964 21 C -0.542 4.542 22 H 0.048 0.952 23 C 0.006 3.994 24 N -0.927 5.927 25 Si 0.961 3.039 26 H -0.265 1.265 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.053 0.947 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.172 0.828 45 H 0.106 0.894 46 H 0.149 0.851 47 H 0.079 0.921 48 H 0.042 0.958 49 H -0.022 1.022 50 H 0.000 1.000 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.221 19.862 11.328 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.196 4.196 4 C -0.110 4.110 5 H 0.138 0.862 6 C -0.198 4.198 7 C 0.323 3.677 8 O -0.464 6.464 9 N -0.382 5.382 10 C -0.036 4.036 11 C 0.006 3.994 12 C -0.011 4.011 13 C -0.009 4.009 14 O -0.276 6.276 15 C -0.015 4.015 16 C 0.262 3.738 17 O -0.467 6.467 18 N -0.311 5.311 19 C 0.014 3.986 20 C -0.002 4.002 21 C -0.580 4.580 22 H 0.067 0.933 23 C -0.192 4.192 24 N -0.567 5.567 25 Si 0.785 3.215 26 H -0.190 1.190 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.189 0.811 45 H 0.124 0.876 46 H 0.167 0.833 47 H 0.098 0.902 48 H 0.060 0.940 49 H -0.004 1.004 50 H 0.018 0.982 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.715 19.393 10.700 25.056 hybrid contribution 1.111 -1.352 -1.688 2.432 sum -10.604 18.041 9.011 22.784 Atomic orbital electron populations 1.21816 0.94469 1.00679 1.03040 1.21003 0.96486 0.97109 0.95602 1.21835 1.01440 0.93263 1.03106 1.21376 0.97361 0.90151 1.02130 0.86208 1.21776 0.92893 1.03914 1.01259 1.21048 0.76111 0.89184 0.81335 1.90735 1.55689 1.67180 1.32827 1.50171 1.62236 1.19223 1.06617 1.23788 1.00658 0.86939 0.92225 1.22672 0.83300 0.95763 0.97653 1.23992 1.05603 0.94759 0.76791 1.23228 0.93221 1.04708 0.79725 1.88146 1.40940 1.58332 1.40135 1.22771 0.88045 0.97100 0.93613 1.22180 0.88151 0.76717 0.86795 1.90744 1.21586 1.48556 1.85806 1.47573 1.15437 1.58058 1.10012 1.21373 0.93189 0.98985 0.85097 1.19142 0.95386 0.92060 0.93567 1.21377 1.22212 1.00862 1.13585 0.93331 1.25886 0.97687 0.95087 1.00588 1.70069 1.40387 1.05540 1.40710 0.85569 0.79355 0.77731 0.78879 1.18987 1.19819 1.19693 0.90442 0.91754 0.95339 0.93487 0.90551 0.92071 0.91844 0.87938 0.93541 0.94367 0.92896 0.84347 0.82809 0.89455 0.90514 0.81120 0.87621 0.83312 0.90249 0.93958 1.00386 0.98210 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.93 71.98 0.64 -2.26 16 2 C -0.08 -1.85 2.20 -10.79 -0.02 -1.87 16 3 C -0.14 -2.08 8.84 71.98 0.64 -1.45 16 4 C -0.09 -2.08 2.18 -11.54 -0.03 -2.11 16 5 H 0.12 1.91 7.75 -2.39 -0.02 1.89 16 6 C -0.14 -3.47 8.64 71.98 0.62 -2.85 16 7 C 0.53 17.52 4.95 87.66 0.43 17.95 16 8 O -0.58 -26.48 16.50 -3.02 -0.05 -26.53 16 9 N -0.65 -17.72 2.19 -843.28 -1.84 -19.57 16 10 C 0.09 2.40 7.58 86.31 0.65 3.05 16 11 C 0.09 2.16 1.56 5.38 0.01 2.17 16 12 C 0.11 1.91 7.49 86.32 0.65 2.56 16 13 C 0.07 0.96 6.09 71.90 0.44 1.40 16 14 O -0.36 -6.10 10.84 -148.98 -1.61 -7.72 16 15 C 0.06 1.40 6.94 71.10 0.49 1.89 16 16 C 0.47 16.71 7.57 87.60 0.66 17.37 16 17 O -0.59 -27.34 16.55 -3.04 -0.05 -27.39 16 18 N -0.58 -20.35 2.67 -787.20 -2.10 -22.45 16 19 C 0.14 6.31 4.49 86.38 0.39 6.70 16 20 C 0.04 2.10 5.10 29.85 0.15 2.25 16 21 C -0.54 -34.31 9.11 25.60 0.23 -34.07 16 22 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 23 C 0.01 0.37 5.46 84.65 0.46 0.83 16 24 N -0.93 -60.30 13.29 21.45 0.28 -60.02 16 25 Si 0.96 48.70 29.54 68.60 2.03 50.72 16 26 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 28 H -0.27 -13.52 7.11 99.48 0.71 -12.82 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.03 0.74 6.84 -2.38 -0.02 0.73 16 32 H 0.05 1.38 7.86 -2.39 -0.02 1.36 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.90 6.57 -2.39 -0.02 0.88 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 1.77 6.76 -2.38 -0.02 1.76 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 2.14 5.30 -2.39 -0.01 2.13 16 40 H 0.14 2.52 8.09 -2.39 -0.02 2.50 16 41 H 0.15 1.03 7.90 -2.39 -0.02 1.01 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.09 8.13 -2.38 -0.02 1.08 16 44 H 0.17 0.72 7.86 -2.39 -0.02 0.70 16 45 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 47 H 0.08 3.58 5.02 -2.39 -0.01 3.57 16 48 H 0.04 2.15 7.49 -2.39 -0.02 2.13 16 49 H -0.02 -1.46 8.13 -2.39 -0.02 -1.48 16 50 H 0.00 -0.01 5.81 -2.39 -0.01 -0.03 16 51 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -93.72 398.84 3.99 -89.73 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.92 Total: 11.66 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.42 Total: 11.57 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.66 Total: -102.04 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -1.71 Total: -61.64 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.72 kcal Total: -93.72 3.99 -89.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271200197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.840 kcal (2) G-P(sol) polarization free energy of solvation -93.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds