Wall clock time and date at job start Tue Mar 31 2020 21:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99870 * 2 1 4 4 O 1.20832 * 119.99590 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00199 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47546 * 300.00764 * 5 3 2 7 7 C 1.53000 * 109.46672 * 60.00410 * 5 3 2 8 8 C 1.53002 * 109.47140 * 179.97438 * 5 3 2 9 9 N 1.46899 * 109.46757 * 175.79092 * 8 5 3 10 10 C 1.48008 * 111.00217 * 294.32375 * 9 8 5 11 11 C 1.54289 * 107.02715 * 214.40716 * 10 9 8 12 12 C 1.53305 * 104.79570 * 1.99383 * 11 10 9 13 13 C 1.53366 * 111.50141 * 141.00887 * 12 11 10 14 14 C 1.54763 * 101.43725 * 145.73297 * 13 12 11 15 15 N 1.46906 * 105.53803 * 335.70599 * 14 13 12 16 16 C 1.46496 * 124.37833 * 196.77060 * 15 14 13 17 17 C 1.52999 * 109.47372 * 270.02239 * 16 15 14 18 18 C 1.50701 * 109.47450 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99698 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99950 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00183 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47126 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47289 * 119.99734 * 22 20 18 25 25 H 1.48505 * 109.46925 * 239.99853 * 22 20 18 26 26 C 1.34840 * 111.24600 * 16.76906 * 15 14 13 27 27 O 1.21283 * 125.18741 * 178.82039 * 26 15 14 28 28 C 1.48776 * 110.99924 * 176.69642 * 9 8 5 29 29 H 1.09002 * 109.47408 * 299.99988 * 1 2 3 30 30 H 1.08998 * 109.47368 * 60.00303 * 1 2 3 31 31 H 1.09003 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47135 * 184.96354 * 7 5 3 33 33 H 1.09004 * 109.47378 * 304.95867 * 7 5 3 34 34 H 1.08997 * 109.47397 * 64.96262 * 7 5 3 35 35 H 1.08997 * 109.46613 * 55.79534 * 8 5 3 36 36 H 1.09000 * 109.47158 * 295.78805 * 8 5 3 37 37 H 1.09001 * 109.92518 * 333.74866 * 10 9 8 38 38 H 1.08999 * 109.92648 * 94.85863 * 10 9 8 39 39 H 1.08997 * 110.37260 * 120.82904 * 11 10 9 40 40 H 1.09003 * 110.36842 * 243.16657 * 11 10 9 41 41 H 1.09001 * 111.03212 * 263.77866 * 13 12 11 42 42 H 1.09005 * 111.02689 * 27.69601 * 13 12 11 43 43 H 1.09004 * 110.23752 * 216.68614 * 14 13 12 44 44 H 1.09004 * 110.23300 * 94.72261 * 14 13 12 45 45 H 1.08993 * 109.47039 * 30.02550 * 16 15 14 46 46 H 1.09007 * 109.47154 * 150.02407 * 16 15 14 47 47 H 1.09007 * 109.47318 * 300.00179 * 17 16 15 48 48 H 1.08999 * 109.47111 * 59.99831 * 17 16 15 49 49 H 0.96992 * 119.99759 * 179.97438 * 21 20 18 50 50 H 1.09000 * 110.68937 * 276.83629 * 28 9 8 51 51 H 1.09002 * 110.68440 * 40.01185 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1137 0.5813 -1.2484 8 6 4.0000 2.7422 -0.0002 9 7 5.4633 2.8202 0.1020 10 6 5.9319 2.3072 1.4089 11 6 7.1623 3.1475 1.8093 12 6 7.3151 4.1784 0.6849 13 6 7.7238 5.5513 1.2327 14 6 8.6314 6.0779 0.0952 15 7 9.1277 4.8815 -0.5980 16 6 10.2780 4.8685 -1.5051 17 6 9.8046 5.1465 -2.9332 18 6 10.9880 5.1337 -3.8662 19 1 11.9786 4.9457 -3.4793 20 6 10.8060 5.3621 -5.2137 21 7 9.5995 5.5905 -5.6849 22 14 12.2727 5.3455 -6.3703 23 1 13.5096 5.0668 -5.5972 24 1 12.0817 4.2898 -7.3969 25 1 12.3930 6.6675 -7.0361 26 6 8.3876 3.7969 -0.2914 27 8 8.5623 2.6827 -0.7375 28 6 5.9287 4.2312 0.0245 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 5.2027 0.5606 -1.2047 33 1 3.7326 -0.4390 -1.2939 34 1 3.7960 1.1278 -2.1363 35 1 3.5486 3.2549 0.8492 36 1 3.6746 3.2168 -0.9259 37 1 5.1460 2.4202 2.1557 38 1 6.2092 1.2570 1.3179 39 1 6.9866 3.6478 2.7616 40 1 8.0494 2.5168 1.8690 41 1 6.8534 6.1935 1.3678 42 1 8.2819 5.4507 2.1636 43 1 9.4642 6.6461 0.5097 44 1 8.0547 6.6988 -0.5904 45 1 10.9886 5.6373 -1.2017 46 1 10.7606 3.8918 -1.4659 47 1 9.0939 4.3776 -3.2366 48 1 9.3220 6.1230 -2.9724 49 1 9.4716 5.7516 -6.6327 50 1 6.0088 4.5538 -1.0136 51 1 5.2613 4.8880 0.5824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273414426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:00 Heat of formation + Delta-G solvation = -117.736368 kcal Electronic energy + Delta-G solvation = -30369.817886 eV Core-core repulsion = 26269.061674 eV Total energy + Delta-G solvation = -4100.756212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04789 -40.67715 -38.19736 -36.78984 -35.90725 -34.93567 -33.46559 -32.06177 -30.37806 -29.02854 -28.16033 -27.82294 -26.19231 -25.04202 -24.04841 -23.06924 -21.86090 -21.52019 -20.47511 -19.72653 -18.52238 -17.88158 -16.99700 -16.64125 -16.59554 -16.13247 -15.66166 -15.63599 -15.14782 -14.68963 -14.46432 -14.37282 -13.94199 -13.83755 -13.54498 -13.39931 -13.07574 -12.84084 -12.64419 -12.61193 -12.51540 -12.34108 -12.15922 -12.09324 -12.00796 -11.70647 -11.47092 -11.28032 -11.15807 -11.10949 -11.04756 -10.95453 -10.83896 -10.73214 -10.61926 -10.50920 -9.95060 -9.81976 -9.26485 -8.99075 -8.45073 -8.34792 -7.93673 -5.99626 -4.02887 1.94534 2.38772 3.09218 3.32313 3.39465 3.43273 3.60953 3.83069 4.30875 4.42800 4.45850 4.47464 4.49114 4.65645 4.77068 4.79134 4.86176 4.87436 5.00684 5.06185 5.13612 5.21099 5.31945 5.36541 5.36792 5.50670 5.54252 5.56923 5.60909 5.72552 5.73680 5.77553 5.81584 5.86760 5.94375 6.02301 6.07287 6.08766 6.15431 6.27876 6.50190 6.74205 6.85661 6.90503 7.08712 7.47275 7.57062 7.71463 7.90864 8.01200 8.37340 8.79936 9.04409 9.61035 11.11794 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.002575 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.432559 B =10869.291397 C =12269.001094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.077 4.077 6 H 0.108 0.892 7 C -0.137 4.137 8 C 0.063 3.937 9 N -0.504 5.504 10 C 0.038 3.962 11 C -0.106 4.106 12 C -0.101 4.101 13 C -0.122 4.122 14 C 0.102 3.898 15 N -0.616 5.616 16 C 0.130 3.870 17 C 0.012 3.988 18 C -0.521 4.521 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.532 3.468 27 O -0.513 6.513 28 C 0.064 3.936 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.090 0.910 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.936 -5.813 18.707 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.397 6.397 5 C -0.097 4.097 6 H 0.126 0.874 7 C -0.195 4.195 8 C -0.066 4.066 9 N -0.228 5.228 10 C -0.090 4.090 11 C -0.144 4.144 12 C -0.105 4.105 13 C -0.160 4.160 14 C -0.021 4.021 15 N -0.350 5.350 16 C 0.010 3.990 17 C -0.026 4.026 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.317 3.683 27 O -0.387 6.387 28 C -0.064 4.064 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.040 0.960 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.109 0.891 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.883 -6.398 17.809 24.075 hybrid contribution 0.052 0.729 -0.144 0.745 sum -14.831 -5.669 17.665 23.752 Atomic orbital electron populations 1.23269 0.76428 1.03689 1.02543 1.86516 1.23332 1.33493 1.84020 1.23902 0.92134 0.81239 0.71780 1.90669 1.67330 1.36363 1.45301 1.21007 0.86211 0.99096 1.03355 0.87395 1.21707 1.03655 0.99490 0.94601 1.22109 0.88173 0.93544 1.02765 1.64754 1.09509 1.17258 1.31275 1.22959 0.95991 1.00517 0.89555 1.22172 0.99163 0.96571 0.96492 1.21405 0.96005 0.96570 0.96556 1.22572 1.00243 0.94828 0.98334 1.22060 0.97866 0.88653 0.93555 1.48663 1.31702 1.08508 1.46123 1.21767 0.85013 1.01410 0.90844 1.19407 0.97164 0.97256 0.88796 1.21130 0.93632 1.48769 0.92439 0.92477 1.25003 0.95767 0.95209 0.98334 1.69985 1.20829 1.48477 1.13814 0.86511 0.82850 0.77556 0.80930 1.19682 1.20950 1.21041 1.19879 0.82116 0.84573 0.81692 1.90696 1.70528 1.21874 1.55637 1.22932 0.92319 0.89237 1.01897 0.91983 0.91841 0.88072 0.89198 0.91961 0.92127 0.93720 0.89542 0.93862 0.89870 0.90700 0.90226 0.89423 0.89907 0.90702 0.91152 0.91818 0.91248 0.95999 0.96571 0.93023 0.89130 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.54 10.37 -39.26 -0.41 -3.94 16 3 C 0.47 5.22 7.25 36.00 0.26 5.48 16 4 O -0.51 -6.91 15.68 -18.75 -0.29 -7.20 16 5 C -0.08 -0.79 2.78 -91.77 -0.25 -1.04 16 6 H 0.11 0.94 7.22 -51.93 -0.38 0.57 16 7 C -0.14 -1.46 8.97 37.16 0.33 -1.13 16 8 C 0.06 0.70 3.46 -3.82 -0.01 0.69 16 9 N -0.50 -6.34 4.81 -230.79 -1.11 -7.45 16 10 C 0.04 0.40 5.56 -2.54 -0.01 0.39 16 11 C -0.11 -1.15 5.98 -25.90 -0.15 -1.30 16 12 C -0.10 -1.31 0.73 -155.33 -0.11 -1.42 16 13 C -0.12 -1.22 6.17 -25.61 -0.16 -1.38 16 14 C 0.10 1.35 7.37 -2.89 -0.02 1.33 16 15 N -0.62 -11.12 2.95 -172.55 -0.51 -11.63 16 16 C 0.13 2.76 5.88 -4.04 -0.02 2.74 16 17 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 18 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 22 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.53 9.74 6.69 -11.31 -0.08 9.67 16 27 O -0.51 -11.53 17.47 5.55 0.10 -11.43 16 28 C 0.06 0.81 5.51 -2.44 -0.01 0.80 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 33 H 0.06 0.59 8.00 -51.93 -0.42 0.17 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.49 7.78 -51.93 -0.40 0.08 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.38 7.64 -51.93 -0.40 -0.01 16 38 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 39 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 40 H 0.08 0.97 7.82 -51.93 -0.41 0.56 16 41 H 0.09 0.69 7.64 -51.93 -0.40 0.30 16 42 H 0.08 0.70 7.90 -51.93 -0.41 0.29 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.07 1.56 7.96 -51.92 -0.41 1.15 16 47 H 0.02 0.65 8.14 -51.92 -0.42 0.23 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.09 1.36 8.01 -51.93 -0.42 0.94 16 51 H 0.06 0.59 7.64 -51.93 -0.40 0.19 16 LS Contribution 411.05 15.07 6.19 6.19 Total: -1.00 -35.50 411.05 -9.09 -44.59 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -9.03 Total: -2.17 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 0.26 Total: 2.68 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.88 Total: -45.57 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.60 Total: -22.58 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.50 -9.09 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273414426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.148 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds