Wall clock time and date at job start Tue Mar 31 2020 21:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99870 * 2 1 4 4 O 1.20832 * 119.99590 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00199 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47546 * 300.00764 * 5 3 2 7 7 C 1.53000 * 109.46672 * 60.00410 * 5 3 2 8 8 C 1.53002 * 109.47140 * 179.97438 * 5 3 2 9 9 N 1.46899 * 109.46757 * 175.79092 * 8 5 3 10 10 C 1.48008 * 111.00217 * 294.32375 * 9 8 5 11 11 C 1.54289 * 107.02715 * 214.40716 * 10 9 8 12 12 C 1.53305 * 104.79570 * 1.99383 * 11 10 9 13 13 C 1.53366 * 111.50141 * 141.00887 * 12 11 10 14 14 C 1.54763 * 101.43725 * 145.73297 * 13 12 11 15 15 N 1.46906 * 105.53803 * 335.70599 * 14 13 12 16 16 C 1.46496 * 124.37833 * 196.77060 * 15 14 13 17 17 C 1.52999 * 109.47372 * 270.02239 * 16 15 14 18 18 C 1.50701 * 109.47450 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99698 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99950 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00183 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47126 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47289 * 119.99734 * 22 20 18 25 25 H 1.48505 * 109.46925 * 239.99853 * 22 20 18 26 26 C 1.34840 * 111.24600 * 16.76906 * 15 14 13 27 27 O 1.21283 * 125.18741 * 178.82039 * 26 15 14 28 28 C 1.48776 * 110.99924 * 176.69642 * 9 8 5 29 29 H 1.09002 * 109.47408 * 299.99988 * 1 2 3 30 30 H 1.08998 * 109.47368 * 60.00303 * 1 2 3 31 31 H 1.09003 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47135 * 184.96354 * 7 5 3 33 33 H 1.09004 * 109.47378 * 304.95867 * 7 5 3 34 34 H 1.08997 * 109.47397 * 64.96262 * 7 5 3 35 35 H 1.08997 * 109.46613 * 55.79534 * 8 5 3 36 36 H 1.09000 * 109.47158 * 295.78805 * 8 5 3 37 37 H 1.09001 * 109.92518 * 333.74866 * 10 9 8 38 38 H 1.08999 * 109.92648 * 94.85863 * 10 9 8 39 39 H 1.08997 * 110.37260 * 120.82904 * 11 10 9 40 40 H 1.09003 * 110.36842 * 243.16657 * 11 10 9 41 41 H 1.09001 * 111.03212 * 263.77866 * 13 12 11 42 42 H 1.09005 * 111.02689 * 27.69601 * 13 12 11 43 43 H 1.09004 * 110.23752 * 216.68614 * 14 13 12 44 44 H 1.09004 * 110.23300 * 94.72261 * 14 13 12 45 45 H 1.08993 * 109.47039 * 30.02550 * 16 15 14 46 46 H 1.09007 * 109.47154 * 150.02407 * 16 15 14 47 47 H 1.09007 * 109.47318 * 300.00179 * 17 16 15 48 48 H 1.08999 * 109.47111 * 59.99831 * 17 16 15 49 49 H 0.96992 * 119.99759 * 179.97438 * 21 20 18 50 50 H 1.09000 * 110.68937 * 276.83629 * 28 9 8 51 51 H 1.09002 * 110.68440 * 40.01185 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1137 0.5813 -1.2484 8 6 4.0000 2.7422 -0.0002 9 7 5.4633 2.8202 0.1020 10 6 5.9319 2.3072 1.4089 11 6 7.1623 3.1475 1.8093 12 6 7.3151 4.1784 0.6849 13 6 7.7238 5.5513 1.2327 14 6 8.6314 6.0779 0.0952 15 7 9.1277 4.8815 -0.5980 16 6 10.2780 4.8685 -1.5051 17 6 9.8046 5.1465 -2.9332 18 6 10.9880 5.1337 -3.8662 19 1 11.9786 4.9457 -3.4793 20 6 10.8060 5.3621 -5.2137 21 7 9.5995 5.5905 -5.6849 22 14 12.2727 5.3455 -6.3703 23 1 13.5096 5.0668 -5.5972 24 1 12.0817 4.2898 -7.3969 25 1 12.3930 6.6675 -7.0361 26 6 8.3876 3.7969 -0.2914 27 8 8.5623 2.6827 -0.7375 28 6 5.9287 4.2312 0.0245 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 5.2027 0.5606 -1.2047 33 1 3.7326 -0.4390 -1.2939 34 1 3.7960 1.1278 -2.1363 35 1 3.5486 3.2549 0.8492 36 1 3.6746 3.2168 -0.9259 37 1 5.1460 2.4202 2.1557 38 1 6.2092 1.2570 1.3179 39 1 6.9866 3.6478 2.7616 40 1 8.0494 2.5168 1.8690 41 1 6.8534 6.1935 1.3678 42 1 8.2819 5.4507 2.1636 43 1 9.4642 6.6461 0.5097 44 1 8.0547 6.6988 -0.5904 45 1 10.9886 5.6373 -1.2017 46 1 10.7606 3.8918 -1.4659 47 1 9.0939 4.3776 -3.2366 48 1 9.3220 6.1230 -2.9724 49 1 9.4716 5.7516 -6.6327 50 1 6.0088 4.5538 -1.0136 51 1 5.2613 4.8880 0.5824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273414426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:59 Heat of formation + Delta-G solvation = -141.600454 kcal Electronic energy + Delta-G solvation = -30370.852711 eV Core-core repulsion = 26269.061674 eV Total energy + Delta-G solvation = -4101.791037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12109 -41.62819 -39.28475 -37.66333 -37.35825 -36.18730 -35.21614 -33.56579 -31.63206 -30.41327 -29.10285 -28.62716 -27.22258 -26.86736 -25.00582 -24.15715 -23.50116 -22.39983 -21.77060 -20.72539 -19.81324 -18.73434 -18.66777 -17.81630 -17.46834 -17.34835 -17.03428 -16.74800 -16.51629 -16.23084 -15.68124 -15.39589 -15.06691 -14.84001 -14.55051 -14.45162 -14.36716 -14.24172 -14.18265 -13.80039 -13.65148 -13.35017 -13.31842 -13.12408 -13.04606 -12.89296 -12.88280 -12.64024 -12.50850 -12.40178 -12.05223 -12.00184 -11.95671 -11.88708 -11.81597 -11.70053 -11.58000 -11.40967 -11.37490 -10.62329 -10.48200 -9.48905 -9.32743 -8.24067 -6.37123 1.07362 1.37941 1.39799 1.52915 1.62736 1.69871 2.20610 2.41992 2.95041 3.09269 3.36065 3.42115 3.55420 3.59550 3.79951 3.91709 3.99605 4.11492 4.22544 4.25243 4.29912 4.30884 4.32844 4.40037 4.47708 4.55874 4.63043 4.67376 4.67774 4.69309 4.73449 4.77362 4.87528 4.88823 4.89760 4.97018 5.01622 5.04643 5.16652 5.25008 5.26461 5.35520 5.36433 5.47443 5.62542 5.83311 5.87036 6.04917 6.16169 6.38635 6.63653 6.79011 7.32118 7.36261 8.88325 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.002575 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.432559 B =10869.291397 C =12269.001094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.072 4.072 6 H 0.129 0.871 7 C -0.131 4.131 8 C 0.069 3.931 9 N -0.531 5.531 10 C 0.037 3.963 11 C -0.100 4.100 12 C -0.095 4.095 13 C -0.103 4.103 14 C 0.091 3.909 15 N -0.626 5.626 16 C 0.144 3.856 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.067 0.933 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.971 3.029 23 H -0.258 1.258 24 H -0.282 1.282 25 H -0.273 1.273 26 C 0.516 3.484 27 O -0.569 6.569 28 C 0.065 3.935 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.132 0.868 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.051 0.949 47 H -0.030 1.030 48 H -0.002 1.002 49 H 0.264 0.736 50 H 0.053 0.947 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 -5.185 21.345 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.091 4.091 6 H 0.147 0.853 7 C -0.188 4.188 8 C -0.059 4.059 9 N -0.255 5.255 10 C -0.090 4.090 11 C -0.138 4.138 12 C -0.100 4.100 13 C -0.140 4.140 14 C -0.031 4.031 15 N -0.358 5.358 16 C 0.022 3.978 17 C -0.013 4.013 18 C -0.582 4.582 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.795 3.205 23 H -0.181 1.181 24 H -0.208 1.208 25 H -0.199 1.199 26 C 0.304 3.696 27 O -0.448 6.448 28 C -0.062 4.062 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.069 0.931 47 H -0.011 1.011 48 H 0.016 0.984 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.909 -5.750 20.486 25.981 hybrid contribution -0.009 0.487 -1.026 1.136 sum -14.918 -5.264 19.460 25.079 Atomic orbital electron populations 1.23564 0.74760 1.05762 1.02521 1.86504 1.24993 1.32633 1.83516 1.23957 0.92273 0.81221 0.70986 1.90656 1.67930 1.37278 1.46759 1.20969 0.85902 0.98575 1.03689 0.85349 1.21607 1.02375 1.00277 0.94564 1.22006 0.87575 0.94167 1.02155 1.64665 1.10275 1.17451 1.33158 1.22999 0.96771 1.00039 0.89174 1.22227 0.98453 0.95889 0.97241 1.21390 0.93719 0.99052 0.95790 1.22666 1.00924 0.92750 0.97692 1.22420 0.99359 0.86991 0.94297 1.48801 1.30858 1.10614 1.45553 1.21311 0.86635 1.01091 0.88783 1.19200 0.95584 0.94313 0.92209 1.21588 0.94497 1.48720 0.93357 0.91480 1.26050 0.99049 0.94474 1.00380 1.70132 1.23433 1.49316 1.14449 0.85310 0.79066 0.77889 0.78241 1.18135 1.20764 1.19856 1.20975 0.82869 0.83752 0.81995 1.90646 1.72137 1.24161 1.57850 1.22893 0.92972 0.90095 1.00274 0.91642 0.92282 0.85009 0.91070 0.90515 0.93520 0.92617 0.91576 0.90976 0.90638 0.86571 0.91985 0.86073 0.87037 0.88301 0.91912 0.89218 0.93088 1.01142 0.98402 0.92739 0.92875 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.68 10.37 -51.44 -0.53 -7.22 16 3 C 0.47 10.19 7.25 71.23 0.52 10.71 16 4 O -0.54 -14.32 15.68 21.95 0.34 -13.98 16 5 C -0.07 -1.43 2.78 -11.54 -0.03 -1.46 16 6 H 0.13 2.03 7.22 -2.39 -0.02 2.01 16 7 C -0.13 -2.89 8.97 71.98 0.65 -2.25 16 8 C 0.07 1.54 3.46 86.30 0.30 1.84 16 9 N -0.53 -13.28 4.81 -884.08 -4.25 -17.54 16 10 C 0.04 0.73 5.56 86.53 0.48 1.21 16 11 C -0.10 -1.92 5.98 31.13 0.19 -1.73 16 12 C -0.10 -2.33 0.73 -52.71 -0.04 -2.37 16 13 C -0.10 -1.68 6.17 31.32 0.19 -1.49 16 14 C 0.09 2.25 7.37 86.90 0.64 2.89 16 15 N -0.63 -23.02 2.95 -818.19 -2.41 -25.43 16 16 C 0.14 6.33 5.88 86.38 0.51 6.84 16 17 C 0.02 1.40 5.30 29.85 0.16 1.56 16 18 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 19 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 20 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 21 N -0.93 -58.97 13.29 21.45 0.28 -58.68 16 22 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 C 0.52 19.53 6.69 87.42 0.58 20.11 16 27 O -0.57 -27.32 17.47 -3.04 -0.05 -27.37 16 28 C 0.07 1.62 5.51 86.16 0.47 2.10 16 29 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.85 7.87 -2.39 -0.02 1.83 16 33 H 0.08 1.44 8.00 -2.38 -0.02 1.42 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.11 7.78 -2.39 -0.02 1.09 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.00 7.64 -2.39 -0.02 0.98 16 38 H 0.08 1.57 8.11 -2.39 -0.02 1.55 16 39 H 0.12 1.30 7.82 -2.39 -0.02 1.29 16 40 H 0.06 1.44 7.82 -2.39 -0.02 1.42 16 41 H 0.12 1.27 7.64 -2.39 -0.02 1.25 16 42 H 0.11 1.28 7.90 -2.38 -0.02 1.26 16 43 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.05 2.41 7.96 -2.38 -0.02 2.39 16 47 H -0.03 -1.95 8.14 -2.38 -0.02 -1.97 16 48 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 49 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 50 H 0.05 1.70 8.01 -2.39 -0.02 1.68 16 51 H 0.09 1.62 7.64 -2.39 -0.02 1.60 16 Total: -1.00 -83.63 411.05 2.81 -80.83 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.89 Total: 13.84 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.51 Total: 8.16 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -6.38 Total: -101.66 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.24 Total: -48.57 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -83.63 2.81 -80.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273414426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.774 kcal (2) G-P(sol) polarization free energy of solvation -83.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds