Wall clock time and date at job start Tue Mar 31 2020 21:21:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45203 * 1
3 3 C 1.34219 * 117.00018 * 2 1
4 4 O 1.20826 * 120.00089 * 0.02562 * 3 2 1
5 5 C 1.50697 * 120.00226 * 180.02562 * 3 2 1
6 6 H 1.09001 * 109.47066 * 60.00624 * 5 3 2
7 7 C 1.53006 * 109.47239 * 300.00732 * 5 3 2
8 8 C 1.52997 * 109.47466 * 180.02562 * 5 3 2
9 9 N 1.46898 * 109.47386 * 184.99904 * 8 5 3
10 10 C 1.47558 * 110.99632 * 69.87549 * 9 8 5
11 11 C 1.54582 * 107.29050 * 123.20477 * 10 9 8
12 12 C 1.53690 * 102.86089 * 20.97425 * 11 10 9
13 13 C 1.53218 * 111.53463 * 205.83434 * 12 11 10
14 14 C 1.54807 * 101.39327 * 261.15358 * 13 12 11
15 15 N 1.46920 * 105.54025 * 335.83015 * 14 13 12
16 16 C 1.46504 * 124.37432 * 196.74945 * 15 14 13
17 17 C 1.53000 * 109.46725 * 270.01912 * 16 15 14
18 18 C 1.50695 * 109.47357 * 180.02562 * 17 16 15
19 19 H 1.08004 * 119.99615 * 0.02562 * 18 17 16
20 20 C 1.37883 * 120.00531 * 180.02562 * 18 17 16
21 21 N 1.31513 * 119.99629 * 359.97438 * 20 18 17
22 22 Si 1.86798 * 120.00309 * 179.97438 * 20 18 17
23 23 H 1.48504 * 109.47046 * 60.00061 * 22 20 18
24 24 H 1.48491 * 109.47219 * 179.97438 * 22 20 18
25 25 H 1.48497 * 109.47334 * 300.00294 * 22 20 18
26 26 C 1.34887 * 111.24653 * 16.73919 * 15 14 13
27 27 O 1.21285 * 125.21712 * 178.75685 * 26 15 14
28 28 C 1.48128 * 111.00580 * 190.81725 * 9 8 5
29 29 H 1.09004 * 109.47049 * 299.99008 * 1 2 3
30 30 H 1.08998 * 109.47280 * 59.99684 * 1 2 3
31 31 H 1.09002 * 109.47084 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46998 * 299.99373 * 7 5 3
33 33 H 1.09000 * 109.47050 * 59.99664 * 7 5 3
34 34 H 1.09001 * 109.46801 * 179.97438 * 7 5 3
35 35 H 1.09004 * 109.47346 * 305.00254 * 8 5 3
36 36 H 1.09002 * 109.47196 * 65.00028 * 8 5 3
37 37 H 1.09005 * 109.87808 * 242.62241 * 10 9 8
38 38 H 1.08998 * 109.88231 * 3.77713 * 10 9 8
39 39 H 1.09007 * 110.73362 * 139.31916 * 11 10 9
40 40 H 1.09003 * 110.73201 * 262.62739 * 11 10 9
41 41 H 1.08995 * 111.04028 * 19.18301 * 13 12 11
42 42 H 1.09000 * 111.03756 * 143.12817 * 13 12 11
43 43 H 1.08998 * 110.23409 * 216.80684 * 14 13 12
44 44 H 1.08997 * 110.29966 * 94.88317 * 14 13 12
45 45 H 1.08999 * 109.47616 * 30.01607 * 16 15 14
46 46 H 1.08998 * 109.47118 * 150.02720 * 16 15 14
47 47 H 1.09003 * 109.47291 * 300.00102 * 17 16 15
48 48 H 1.08997 * 109.47190 * 59.99979 * 17 16 15
49 49 H 0.96996 * 119.99978 * 179.97438 * 21 20 18
50 50 H 1.09009 * 110.39200 * 333.88188 * 28 9 8
51 51 H 1.08999 * 110.39681 * 96.28191 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4033 2.2092 0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9557 0.7810 -0.8909
7 6 4.1139 0.5808 1.2482
8 6 4.0001 2.7420 0.0002
9 7 5.4620 2.8205 -0.1211
10 6 5.9037 2.4084 -1.4673
11 6 6.7150 3.5813 -2.0637
12 6 7.1338 4.3764 -0.8170
13 6 7.3785 5.8524 -1.1472
14 6 8.9206 5.8846 -1.2797
15 7 9.4076 4.7479 -0.4864
16 6 10.7921 4.5869 -0.0352
17 6 11.5867 3.8177 -1.0925
18 6 13.0107 3.6514 -0.6283
19 1 13.3181 4.0537 0.3257
20 6 13.9212 2.9857 -1.4214
21 7 13.5467 2.4954 -2.5828
22 14 15.6865 2.7802 -0.8462
23 1 15.7058 2.0258 0.4328
24 1 16.4577 2.0336 -1.8723
25 1 16.2992 4.1173 -0.6415
26 6 8.4152 3.8720 -0.2269
27 8 8.5409 2.8350 0.3894
28 6 5.9427 4.1982 0.1340
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3633 -1.0277 -0.0005
32 1 3.7246 1.0747 2.1386
33 1 3.8048 -0.4644 1.2481
34 1 5.2024 0.6376 1.2475
35 1 3.5375 3.2582 -0.8411
36 1 3.6871 3.2130 0.9320
37 1 6.5330 1.5212 -1.3955
38 1 5.0368 2.2006 -2.0945
39 1 7.5904 3.2125 -2.5984
40 1 6.0901 4.1896 -2.7176
41 1 6.8992 6.1279 -2.0866
42 1 7.0421 6.4962 -0.3346
43 1 9.3139 6.8193 -0.8802
44 1 9.2129 5.7687 -2.3233
45 1 11.2420 5.5683 0.1146
46 1 10.8062 4.0334 0.9037
47 1 11.1369 2.8362 -1.2424
48 1 11.5726 4.3711 -2.0315
49 1 14.1873 2.0274 -3.1410
50 1 5.1609 4.9220 -0.0964
51 1 6.2648 4.3024 1.1701
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001273414428.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:21:06
Heat of formation + Delta-G solvation = -117.718092 kcal
Electronic energy + Delta-G solvation = -30221.424979 eV
Core-core repulsion = 26120.669559 eV
Total energy + Delta-G solvation = -4100.755420 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.09460 -40.71582 -38.21184 -36.82443 -35.93706 -34.92928 -33.48835 -32.06038
-30.22612 -29.22614 -28.19220 -27.88596 -26.18474 -25.08413 -23.94541 -23.25605
-21.90725 -21.43433 -20.40176 -19.83694 -18.55167 -17.92488 -17.03976 -16.67515
-16.60380 -16.17709 -15.75530 -15.52164 -15.14699 -14.82058 -14.47961 -14.30189
-13.83312 -13.74734 -13.68332 -13.39417 -13.25445 -12.74611 -12.66984 -12.64393
-12.43602 -12.41348 -12.22462 -12.15987 -12.00199 -11.86555 -11.50711 -11.30333
-11.20325 -11.12722 -11.02183 -10.93806 -10.88316 -10.73620 -10.63874 -10.55002
-9.96443 -9.83345 -9.30128 -9.00930 -8.36029 -8.35945 -7.95403 -6.01376
-4.04712 1.90530 2.35499 3.06179 3.33597 3.37815 3.39949 3.58924
3.80925 4.32959 4.38093 4.42459 4.46494 4.48875 4.63194 4.74368
4.77508 4.82547 4.83377 4.99687 5.08061 5.17179 5.19220 5.27027
5.34664 5.36069 5.44771 5.50329 5.54010 5.61406 5.71780 5.72757
5.75204 5.80316 5.85766 5.91349 6.03102 6.04800 6.10599 6.17577
6.22667 6.48983 6.82231 6.83542 6.94149 7.06602 7.43326 7.54552
7.68574 7.88380 7.98873 8.35399 8.77512 9.02041 9.59151 11.10013
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.019688 B = 0.002216 C = 0.002088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1421.832650 B =12633.356852 C =13407.677805
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.357 6.357
3 C 0.467 3.533
4 O -0.511 6.511
5 C -0.078 4.078
6 H 0.110 0.890
7 C -0.136 4.136
8 C 0.066 3.934
9 N -0.515 5.515
10 C 0.043 3.957
11 C -0.118 4.118
12 C -0.108 4.108
13 C -0.120 4.120
14 C 0.104 3.896
15 N -0.616 5.616
16 C 0.129 3.871
17 C 0.013 3.987
18 C -0.522 4.522
19 H 0.056 0.944
20 C 0.059 3.941
21 N -0.893 5.893
22 Si 0.895 3.105
23 H -0.276 1.276
24 H -0.287 1.287
25 H -0.277 1.277
26 C 0.530 3.470
27 O -0.510 6.510
28 C 0.074 3.926
29 H 0.062 0.938
30 H 0.062 0.938
31 H 0.101 0.899
32 H 0.055 0.945
33 H 0.062 0.938
34 H 0.091 0.909
35 H 0.045 0.955
36 H 0.082 0.918
37 H 0.086 0.914
38 H 0.054 0.946
39 H 0.083 0.917
40 H 0.077 0.923
41 H 0.088 0.912
42 H 0.082 0.918
43 H 0.075 0.925
44 H 0.070 0.930
45 H 0.064 0.936
46 H 0.070 0.930
47 H 0.021 0.979
48 H 0.016 0.984
49 H 0.261 0.739
50 H 0.055 0.945
51 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.164 2.123 2.111 25.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.273 6.273
3 C 0.310 3.690
4 O -0.399 6.399
5 C -0.098 4.098
6 H 0.128 0.872
7 C -0.194 4.194
8 C -0.062 4.062
9 N -0.239 5.239
10 C -0.085 4.085
11 C -0.156 4.156
12 C -0.112 4.112
13 C -0.158 4.158
14 C -0.020 4.020
15 N -0.350 5.350
16 C 0.009 3.991
17 C -0.025 4.025
18 C -0.561 4.561
19 H 0.074 0.926
20 C -0.143 4.143
21 N -0.532 5.532
22 Si 0.723 3.277
23 H -0.201 1.201
24 H -0.213 1.213
25 H -0.202 1.202
26 C 0.315 3.685
27 O -0.385 6.385
28 C -0.054 4.054
29 H 0.081 0.919
30 H 0.080 0.920
31 H 0.119 0.881
32 H 0.074 0.926
33 H 0.081 0.919
34 H 0.110 0.890
35 H 0.063 0.937
36 H 0.100 0.900
37 H 0.104 0.896
38 H 0.073 0.927
39 H 0.102 0.898
40 H 0.095 0.905
41 H 0.106 0.894
42 H 0.100 0.900
43 H 0.093 0.907
44 H 0.088 0.912
45 H 0.082 0.918
46 H 0.088 0.912
47 H 0.039 0.961
48 H 0.034 0.966
49 H 0.071 0.929
50 H 0.074 0.926
51 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -24.964 1.406 2.703 25.149
hybrid contribution 0.456 0.523 -0.575 0.901
sum -24.509 1.929 2.128 24.676
Atomic orbital electron populations
1.23271 0.76437 1.03720 1.02503 1.86524 1.23323 1.33498 1.83964
1.23928 0.92166 0.81221 0.71707 1.90660 1.67372 1.36377 1.45447
1.21029 0.86051 0.99249 1.03463 0.87217 1.21695 1.03827 0.99514
0.94323 1.22092 0.88344 0.93395 1.02411 1.63555 1.09354 1.23204
1.27771 1.22971 0.98536 0.98981 0.87994 1.22538 1.00755 0.96670
0.95666 1.21536 0.95709 0.96666 0.97301 1.22488 0.96023 0.94335
1.02983 1.22053 0.93091 0.90191 0.96692 1.48684 1.10333 1.22685
1.53274 1.21775 0.77251 1.00568 0.99476 1.19392 0.94069 0.95604
0.93461 1.21058 0.94464 1.36246 1.04346 0.92555 1.25003 0.98953
0.95414 0.94923 1.69960 1.35015 1.37313 1.10909 0.86610 0.84424
0.78234 0.78455 1.20127 1.21284 1.20219 1.19854 0.85109 0.83702
0.79802 1.90717 1.84300 1.22763 1.40681 1.22663 0.94158 0.88713
0.99831 0.91902 0.91953 0.88052 0.92567 0.91935 0.89003 0.93720
0.89963 0.89557 0.92723 0.89822 0.90477 0.89389 0.89975 0.90707
0.91182 0.91788 0.91194 0.96108 0.96581 0.92901 0.92644 0.89691
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 10.56 101.05 1.07 1.29 16
2 O -0.36 -3.36 10.47 -39.23 -0.41 -3.77 16
3 C 0.47 4.91 7.25 36.00 0.26 5.17 16
4 O -0.51 -6.51 15.67 -18.75 -0.29 -6.80 16
5 C -0.08 -0.75 2.80 -91.77 -0.26 -1.01 16
6 H 0.11 0.97 7.05 -51.93 -0.37 0.61 16
7 C -0.14 -1.29 9.01 37.16 0.33 -0.95 16
8 C 0.07 0.68 3.27 -3.83 -0.01 0.67 16
9 N -0.52 -6.14 4.62 -231.68 -1.07 -7.21 16
10 C 0.04 0.50 6.11 -2.63 -0.02 0.48 16
11 C -0.12 -1.39 5.94 -25.54 -0.15 -1.54 16
12 C -0.11 -1.39 0.67 -155.38 -0.10 -1.49 16
13 C -0.12 -1.21 6.26 -25.67 -0.16 -1.37 16
14 C 0.10 1.36 7.37 -2.86 -0.02 1.34 16
15 N -0.62 -11.04 2.95 -172.56 -0.51 -11.54 16
16 C 0.13 2.74 5.88 -4.04 -0.02 2.71 16
17 C 0.01 0.33 5.30 -27.89 -0.15 0.18 16
18 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16
19 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16
20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
21 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16
22 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16
23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
26 C 0.53 9.62 6.73 -11.36 -0.08 9.54 16
27 O -0.51 -11.36 17.51 5.55 0.10 -11.26 16
28 C 0.07 0.86 5.53 -2.91 -0.02 0.85 16
29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16
30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16
31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16
34 H 0.09 1.02 7.75 -51.93 -0.40 0.61 16
35 H 0.04 0.46 7.78 -51.93 -0.40 0.06 16
36 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16
37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
38 H 0.05 0.53 6.94 -51.93 -0.36 0.17 16
39 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16
40 H 0.08 0.72 7.74 -51.93 -0.40 0.32 16
41 H 0.09 0.70 7.62 -51.93 -0.40 0.30 16
42 H 0.08 0.71 7.97 -51.93 -0.41 0.30 16
43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
46 H 0.07 1.57 7.96 -51.93 -0.41 1.15 16
47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16
48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
50 H 0.06 0.53 7.70 -51.92 -0.40 0.13 16
51 H 0.08 1.09 8.01 -51.93 -0.42 0.67 16
LS Contribution 410.77 15.07 6.19 6.19
Total: -1.00 -34.93 410.77 -9.01 -43.94
By element:
Atomic # 1 Polarization: 6.72 SS G_CDS: -9.00 Total: -2.28 kcal
Atomic # 6 Polarization: 2.05 SS G_CDS: 0.26 Total: 2.31 kcal
Atomic # 7 Polarization: -44.22 SS G_CDS: -0.84 Total: -45.07 kcal
Atomic # 8 Polarization: -21.23 SS G_CDS: -0.61 Total: -21.84 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -34.93 -9.01 -43.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001273414428.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.778 kcal
(2) G-P(sol) polarization free energy of solvation -34.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.718 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds