Wall clock time and date at job start Tue Mar 31 2020 21:21:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45203 * 1
3 3 C 1.34219 * 117.00018 * 2 1
4 4 O 1.20826 * 120.00089 * 0.02562 * 3 2 1
5 5 C 1.50697 * 120.00226 * 180.02562 * 3 2 1
6 6 H 1.09001 * 109.47066 * 60.00624 * 5 3 2
7 7 C 1.53006 * 109.47239 * 300.00732 * 5 3 2
8 8 C 1.52997 * 109.47466 * 180.02562 * 5 3 2
9 9 N 1.46898 * 109.47386 * 184.99904 * 8 5 3
10 10 C 1.47558 * 110.99632 * 69.87549 * 9 8 5
11 11 C 1.54582 * 107.29050 * 123.20477 * 10 9 8
12 12 C 1.53690 * 102.86089 * 20.97425 * 11 10 9
13 13 C 1.53218 * 111.53463 * 205.83434 * 12 11 10
14 14 C 1.54807 * 101.39327 * 261.15358 * 13 12 11
15 15 N 1.46920 * 105.54025 * 335.83015 * 14 13 12
16 16 C 1.46504 * 124.37432 * 196.74945 * 15 14 13
17 17 C 1.53000 * 109.46725 * 270.01912 * 16 15 14
18 18 C 1.50695 * 109.47357 * 180.02562 * 17 16 15
19 19 H 1.08004 * 119.99615 * 0.02562 * 18 17 16
20 20 C 1.37883 * 120.00531 * 180.02562 * 18 17 16
21 21 N 1.31513 * 119.99629 * 359.97438 * 20 18 17
22 22 Si 1.86798 * 120.00309 * 179.97438 * 20 18 17
23 23 H 1.48504 * 109.47046 * 60.00061 * 22 20 18
24 24 H 1.48491 * 109.47219 * 179.97438 * 22 20 18
25 25 H 1.48497 * 109.47334 * 300.00294 * 22 20 18
26 26 C 1.34887 * 111.24653 * 16.73919 * 15 14 13
27 27 O 1.21285 * 125.21712 * 178.75685 * 26 15 14
28 28 C 1.48128 * 111.00580 * 190.81725 * 9 8 5
29 29 H 1.09004 * 109.47049 * 299.99008 * 1 2 3
30 30 H 1.08998 * 109.47280 * 59.99684 * 1 2 3
31 31 H 1.09002 * 109.47084 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46998 * 299.99373 * 7 5 3
33 33 H 1.09000 * 109.47050 * 59.99664 * 7 5 3
34 34 H 1.09001 * 109.46801 * 179.97438 * 7 5 3
35 35 H 1.09004 * 109.47346 * 305.00254 * 8 5 3
36 36 H 1.09002 * 109.47196 * 65.00028 * 8 5 3
37 37 H 1.09005 * 109.87808 * 242.62241 * 10 9 8
38 38 H 1.08998 * 109.88231 * 3.77713 * 10 9 8
39 39 H 1.09007 * 110.73362 * 139.31916 * 11 10 9
40 40 H 1.09003 * 110.73201 * 262.62739 * 11 10 9
41 41 H 1.08995 * 111.04028 * 19.18301 * 13 12 11
42 42 H 1.09000 * 111.03756 * 143.12817 * 13 12 11
43 43 H 1.08998 * 110.23409 * 216.80684 * 14 13 12
44 44 H 1.08997 * 110.29966 * 94.88317 * 14 13 12
45 45 H 1.08999 * 109.47616 * 30.01607 * 16 15 14
46 46 H 1.08998 * 109.47118 * 150.02720 * 16 15 14
47 47 H 1.09003 * 109.47291 * 300.00102 * 17 16 15
48 48 H 1.08997 * 109.47190 * 59.99979 * 17 16 15
49 49 H 0.96996 * 119.99978 * 179.97438 * 21 20 18
50 50 H 1.09009 * 110.39200 * 333.88188 * 28 9 8
51 51 H 1.08999 * 110.39681 * 96.28191 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4033 2.2092 0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9557 0.7810 -0.8909
7 6 4.1139 0.5808 1.2482
8 6 4.0001 2.7420 0.0002
9 7 5.4620 2.8205 -0.1211
10 6 5.9037 2.4084 -1.4673
11 6 6.7150 3.5813 -2.0637
12 6 7.1338 4.3764 -0.8170
13 6 7.3785 5.8524 -1.1472
14 6 8.9206 5.8846 -1.2797
15 7 9.4076 4.7479 -0.4864
16 6 10.7921 4.5869 -0.0352
17 6 11.5867 3.8177 -1.0925
18 6 13.0107 3.6514 -0.6283
19 1 13.3181 4.0537 0.3257
20 6 13.9212 2.9857 -1.4214
21 7 13.5467 2.4954 -2.5828
22 14 15.6865 2.7802 -0.8462
23 1 15.7058 2.0258 0.4328
24 1 16.4577 2.0336 -1.8723
25 1 16.2992 4.1173 -0.6415
26 6 8.4152 3.8720 -0.2269
27 8 8.5409 2.8350 0.3894
28 6 5.9427 4.1982 0.1340
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3633 -1.0277 -0.0005
32 1 3.7246 1.0747 2.1386
33 1 3.8048 -0.4644 1.2481
34 1 5.2024 0.6376 1.2475
35 1 3.5375 3.2582 -0.8411
36 1 3.6871 3.2130 0.9320
37 1 6.5330 1.5212 -1.3955
38 1 5.0368 2.2006 -2.0945
39 1 7.5904 3.2125 -2.5984
40 1 6.0901 4.1896 -2.7176
41 1 6.8992 6.1279 -2.0866
42 1 7.0421 6.4962 -0.3346
43 1 9.3139 6.8193 -0.8802
44 1 9.2129 5.7687 -2.3233
45 1 11.2420 5.5683 0.1146
46 1 10.8062 4.0334 0.9037
47 1 11.1369 2.8362 -1.2424
48 1 11.5726 4.3711 -2.0315
49 1 14.1873 2.0274 -3.1410
50 1 5.1609 4.9220 -0.0964
51 1 6.2648 4.3024 1.1701
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001273414428.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:21:05
Heat of formation + Delta-G solvation = -140.686098 kcal
Electronic energy + Delta-G solvation = -30222.420946 eV
Core-core repulsion = 26120.669559 eV
Total energy + Delta-G solvation = -4101.751387 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.15778 -41.60801 -39.28296 -37.64234 -37.37651 -36.15483 -35.19366 -33.55935
-31.48097 -30.54989 -29.18921 -28.61520 -27.19255 -26.82567 -24.87516 -24.30202
-23.55383 -22.29889 -21.76221 -20.72970 -19.84860 -18.72401 -18.65378 -17.79778
-17.47979 -17.30843 -17.07152 -16.74491 -16.47104 -16.29146 -15.72504 -15.31307
-14.90236 -14.78749 -14.61007 -14.50712 -14.45808 -14.21374 -14.08877 -13.76043
-13.61278 -13.35178 -13.23502 -13.19003 -13.05521 -12.89407 -12.83667 -12.76652
-12.57688 -12.39503 -12.05409 -11.98743 -11.92051 -11.87017 -11.83216 -11.76848
-11.52050 -11.41767 -11.38332 -10.60820 -10.48806 -9.49467 -9.22287 -8.23843
-6.36766 1.10038 1.38592 1.43018 1.50475 1.65019 1.68363 2.19170
2.42153 2.94412 3.09353 3.33574 3.48104 3.48491 3.64285 3.83993
3.89836 3.99650 4.07313 4.23409 4.26600 4.31836 4.32337 4.34866
4.39261 4.49107 4.53521 4.64391 4.66135 4.70185 4.70995 4.73770
4.79684 4.82761 4.87553 4.94709 4.96734 5.01560 5.04252 5.16645
5.23130 5.29265 5.34645 5.40613 5.47412 5.62088 5.84206 5.95129
6.09658 6.16258 6.37083 6.66069 6.78605 7.31911 7.35051 8.88093
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.019688 B = 0.002216 C = 0.002088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1421.832650 B =12633.356852 C =13407.677805
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.363 6.363
3 C 0.473 3.527
4 O -0.535 6.535
5 C -0.077 4.077
6 H 0.117 0.883
7 C -0.130 4.130
8 C 0.073 3.927
9 N -0.534 5.534
10 C 0.045 3.955
11 C -0.115 4.115
12 C -0.103 4.103
13 C -0.102 4.102
14 C 0.093 3.907
15 N -0.625 5.625
16 C 0.143 3.857
17 C 0.026 3.974
18 C -0.546 4.546
19 H 0.066 0.934
20 C -0.001 4.001
21 N -0.933 5.933
22 Si 0.971 3.029
23 H -0.270 1.270
24 H -0.283 1.283
25 H -0.259 1.259
26 C 0.514 3.486
27 O -0.566 6.566
28 C 0.078 3.922
29 H 0.062 0.938
30 H 0.063 0.937
31 H 0.130 0.870
32 H 0.056 0.944
33 H 0.071 0.929
34 H 0.071 0.929
35 H 0.052 0.948
36 H 0.080 0.920
37 H 0.054 0.946
38 H 0.080 0.920
39 H 0.055 0.945
40 H 0.116 0.884
41 H 0.123 0.877
42 H 0.106 0.894
43 H 0.097 0.903
44 H 0.065 0.935
45 H 0.089 0.911
46 H 0.050 0.950
47 H -0.029 1.029
48 H -0.001 1.001
49 H 0.264 0.736
50 H 0.090 0.910
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.531 3.958 1.982 26.898
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.279 6.279
3 C 0.317 3.683
4 O -0.424 6.424
5 C -0.096 4.096
6 H 0.135 0.865
7 C -0.187 4.187
8 C -0.055 4.055
9 N -0.258 5.258
10 C -0.083 4.083
11 C -0.153 4.153
12 C -0.107 4.107
13 C -0.140 4.140
14 C -0.029 4.029
15 N -0.358 5.358
16 C 0.021 3.979
17 C -0.012 4.012
18 C -0.584 4.584
19 H 0.084 0.916
20 C -0.199 4.199
21 N -0.572 5.572
22 Si 0.795 3.205
23 H -0.195 1.195
24 H -0.208 1.208
25 H -0.184 1.184
26 C 0.303 3.697
27 O -0.445 6.445
28 C -0.049 4.049
29 H 0.081 0.919
30 H 0.082 0.918
31 H 0.148 0.852
32 H 0.075 0.925
33 H 0.090 0.910
34 H 0.090 0.910
35 H 0.070 0.930
36 H 0.099 0.901
37 H 0.072 0.928
38 H 0.098 0.902
39 H 0.074 0.926
40 H 0.135 0.865
41 H 0.142 0.858
42 H 0.125 0.875
43 H 0.116 0.884
44 H 0.083 0.917
45 H 0.107 0.893
46 H 0.069 0.931
47 H -0.010 1.010
48 H 0.017 0.983
49 H 0.073 0.927
50 H 0.108 0.892
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -26.356 3.275 2.565 26.682
hybrid contribution 0.848 -0.130 -0.544 1.016
sum -25.507 3.146 2.021 25.780
Atomic orbital electron populations
1.23559 0.74769 1.05693 1.02575 1.86513 1.25005 1.32838 1.83517
1.23942 0.92233 0.81180 0.70986 1.90646 1.67897 1.37135 1.46763
1.21009 0.85832 0.99123 1.03646 0.86516 1.21600 1.02386 1.00182
0.94522 1.22030 0.87182 0.93734 1.02541 1.63431 1.10519 1.23853
1.27979 1.22873 0.98975 0.97922 0.88503 1.22588 1.00228 0.97042
0.95463 1.21514 0.92986 0.98546 0.97625 1.22580 0.93379 0.92266
1.05738 1.22407 0.95632 0.89115 0.95727 1.48815 1.08961 1.24416
1.53593 1.21319 0.79177 1.00609 0.96747 1.19188 0.94238 0.93464
0.94335 1.21530 0.95545 1.36497 1.04847 0.91566 1.26039 1.04130
0.94812 0.94905 1.70108 1.36807 1.38033 1.12277 0.85417 0.78229
0.78943 0.77960 1.19527 1.20799 1.18374 1.20916 0.87151 0.82823
0.78857 1.90669 1.85571 1.25103 1.43113 1.22657 0.94292 0.89353
0.98626 0.91911 0.91833 0.85219 0.92467 0.91045 0.91017 0.93005
0.90142 0.92793 0.90203 0.92646 0.86536 0.85848 0.87510 0.88437
0.91663 0.89276 0.93138 1.01031 0.98278 0.92696 0.89219 0.91302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.31 10.56 113.37 1.20 1.51 16
2 O -0.36 -6.34 10.47 -51.31 -0.54 -6.88 16
3 C 0.47 9.37 7.25 71.23 0.52 9.89 16
4 O -0.53 -12.93 15.67 21.97 0.34 -12.58 16
5 C -0.08 -1.41 2.80 -11.54 -0.03 -1.44 16
6 H 0.12 1.97 7.05 -2.39 -0.02 1.96 16
7 C -0.13 -2.45 9.01 71.98 0.65 -1.80 16
8 C 0.07 1.40 3.27 86.30 0.28 1.68 16
9 N -0.53 -12.40 4.62 -886.90 -4.10 -16.49 16
10 C 0.04 1.04 6.11 86.72 0.53 1.57 16
11 C -0.11 -2.57 5.94 31.36 0.19 -2.38 16
12 C -0.10 -2.50 0.67 -52.75 -0.04 -2.54 16
13 C -0.10 -1.68 6.26 31.28 0.20 -1.49 16
14 C 0.09 2.27 7.37 86.92 0.64 2.91 16
15 N -0.63 -22.77 2.95 -818.20 -2.41 -25.19 16
16 C 0.14 6.27 5.88 86.38 0.51 6.78 16
17 C 0.03 1.43 5.30 29.85 0.16 1.58 16
18 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16
19 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16
20 C 0.00 -0.05 5.46 84.66 0.46 0.42 16
21 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16
22 Si 0.97 44.97 29.54 68.60 2.03 46.99 16
23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16
26 C 0.51 19.31 6.73 87.36 0.59 19.89 16
27 O -0.57 -26.98 17.51 -3.04 -0.05 -27.04 16
28 C 0.08 1.69 5.53 86.22 0.48 2.17 16
29 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16
30 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16
31 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16
32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
33 H 0.07 1.20 8.11 -2.39 -0.02 1.18 16
34 H 0.07 1.67 7.75 -2.39 -0.02 1.65 16
35 H 0.05 0.93 7.78 -2.39 -0.02 0.92 16
36 H 0.08 1.57 8.07 -2.39 -0.02 1.56 16
37 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16
38 H 0.08 1.41 6.94 -2.39 -0.02 1.39 16
39 H 0.05 1.56 8.00 -2.38 -0.02 1.54 16
40 H 0.12 1.72 7.74 -2.39 -0.02 1.70 16
41 H 0.12 1.27 7.62 -2.39 -0.02 1.25 16
42 H 0.11 1.32 7.97 -2.39 -0.02 1.30 16
43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16
44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
45 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16
46 H 0.05 2.38 7.96 -2.39 -0.02 2.36 16
47 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16
48 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16
49 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16
50 H 0.09 1.35 7.70 -2.38 -0.02 1.33 16
51 H 0.07 1.72 8.01 -2.39 -0.02 1.70 16
Total: -1.00 -81.25 410.77 3.00 -78.24
By element:
Atomic # 1 Polarization: 12.82 SS G_CDS: 0.89 Total: 13.71 kcal
Atomic # 6 Polarization: 0.59 SS G_CDS: 6.56 Total: 7.14 kcal
Atomic # 7 Polarization: -93.37 SS G_CDS: -6.22 Total: -99.59 kcal
Atomic # 8 Polarization: -46.25 SS G_CDS: -0.25 Total: -46.49 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal
Total: -81.25 3.00 -78.24 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001273414428.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.444 kcal
(2) G-P(sol) polarization free energy of solvation -81.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.686 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds