Wall clock time and date at job start Tue Mar 31 2020 21:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99726 * 2 1 4 4 O 1.20819 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99805 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.46961 * 299.99664 * 5 3 2 7 7 C 1.52999 * 109.47126 * 60.00117 * 5 3 2 8 8 C 1.53002 * 109.46812 * 179.97438 * 5 3 2 9 9 N 1.46894 * 109.47279 * 65.53229 * 8 5 3 10 10 C 1.48657 * 111.00231 * 79.79067 * 9 8 5 11 11 C 1.54636 * 104.63378 * 158.51657 * 10 9 8 12 12 C 1.53258 * 104.67632 * 336.31241 * 11 10 9 13 13 C 1.53603 * 111.08478 * 239.52578 * 12 11 10 14 14 C 1.54716 * 101.50912 * 262.66651 * 13 12 11 15 15 N 1.46889 * 105.51776 * 335.48822 * 14 13 12 16 16 C 1.46501 * 124.36790 * 196.86110 * 15 14 13 17 17 C 1.53000 * 109.47279 * 269.98197 * 16 15 14 18 18 C 1.50693 * 109.47091 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00461 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00066 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00470 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47105 * 59.99939 * 22 20 18 24 24 H 1.48499 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47332 * 300.00354 * 22 20 18 26 26 C 1.34749 * 111.25613 * 16.82353 * 15 14 13 27 27 O 1.21285 * 125.13064 * 179.01313 * 26 15 14 28 28 C 1.48802 * 111.00216 * 195.40443 * 9 8 5 29 29 H 1.09000 * 109.47237 * 60.00004 * 1 2 3 30 30 H 1.09001 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46898 * 299.99510 * 1 2 3 32 32 H 1.08999 * 109.47230 * 57.47226 * 7 5 3 33 33 H 1.08998 * 109.47127 * 177.46846 * 7 5 3 34 34 H 1.08998 * 109.47207 * 297.46629 * 7 5 3 35 35 H 1.08997 * 109.47534 * 305.52827 * 8 5 3 36 36 H 1.09003 * 109.46836 * 185.53037 * 8 5 3 37 37 H 1.09005 * 110.39977 * 39.72928 * 10 9 8 38 38 H 1.09003 * 110.40547 * 277.30782 * 10 9 8 39 39 H 1.09002 * 110.39980 * 217.51288 * 11 10 9 40 40 H 1.08998 * 110.39803 * 95.11383 * 11 10 9 41 41 H 1.08996 * 111.01967 * 20.71903 * 13 12 11 42 42 H 1.08995 * 111.01814 * 144.61341 * 13 12 11 43 43 H 1.08991 * 110.23774 * 216.47601 * 14 13 12 44 44 H 1.08997 * 110.30732 * 94.53153 * 14 13 12 45 45 H 1.09005 * 109.47284 * 29.98390 * 16 15 14 46 46 H 1.09002 * 109.46993 * 149.98016 * 16 15 14 47 47 H 1.08998 * 109.46882 * 299.99992 * 17 16 15 48 48 H 1.08998 * 109.46964 * 60.00381 * 17 16 15 49 49 H 0.97003 * 120.00328 * 179.97438 * 21 20 18 50 50 H 1.08996 * 110.45504 * 83.07754 * 28 9 8 51 51 H 1.08997 * 110.56299 * 320.56749 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7807 0.8891 7 6 4.1129 0.5817 -1.2502 8 6 4.0000 2.7422 -0.0011 9 7 3.5892 3.3747 1.2594 10 6 4.5344 3.0391 2.3567 11 6 4.3261 4.1551 3.4067 12 6 3.7563 5.3349 2.6116 13 6 4.6659 6.5675 2.7235 14 6 3.9660 7.3665 3.8485 15 7 2.5643 6.9280 3.8283 16 6 1.4619 7.6521 4.4661 17 6 1.2931 7.1597 5.9049 18 6 0.1589 7.9041 6.5607 19 1 -0.3874 8.6532 6.0067 20 6 -0.1824 7.6282 7.8678 21 7 0.4818 6.7150 8.5420 22 14 -1.5888 8.5504 8.6806 23 1 -2.8431 8.3075 7.9235 24 1 -1.7526 8.0726 10.0771 25 1 -1.2887 10.0048 8.6876 26 6 2.4231 5.7742 3.1467 27 8 1.3774 5.1804 2.9886 28 6 3.6530 4.8579 1.1575 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.6877 1.0472 -2.1393 33 1 5.1984 0.6778 -1.2736 34 1 3.8420 -0.4739 -1.2279 35 1 3.5301 3.2598 -0.8373 36 1 5.0839 2.8006 -0.1006 37 1 5.5609 3.0488 1.9902 38 1 4.2914 2.0659 2.7832 39 1 5.2770 4.4290 3.8637 40 1 3.6166 3.8323 4.1685 41 1 5.6762 6.2825 3.0170 42 1 4.6758 7.1320 1.7912 43 1 4.0295 8.4357 3.6471 44 1 4.4188 7.1374 4.8132 45 1 1.6830 8.7195 4.4709 46 1 0.5410 7.4743 3.9108 47 1 1.0721 6.0924 5.9000 48 1 2.2141 7.3376 6.4601 49 1 0.2420 6.5211 9.4617 50 1 2.7474 5.2470 0.6923 51 1 4.5329 5.1653 0.5924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273414429.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:08 Heat of formation + Delta-G solvation = -114.608249 kcal Electronic energy + Delta-G solvation = -30648.694459 eV Core-core repulsion = 26548.073892 eV Total energy + Delta-G solvation = -4100.620567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91684 -40.39553 -38.09922 -36.44396 -35.84242 -34.88379 -33.53425 -32.12889 -30.27653 -29.10386 -28.03314 -27.81421 -26.05340 -24.92560 -23.78641 -23.09681 -21.95552 -21.37608 -20.37256 -19.86753 -18.50136 -17.63454 -16.74430 -16.62810 -16.40124 -16.09095 -15.80086 -15.30914 -14.95806 -14.72922 -14.47103 -14.32094 -13.94017 -13.83605 -13.41077 -13.25018 -13.06482 -12.67442 -12.62024 -12.60087 -12.47969 -12.19512 -12.11187 -12.05083 -11.97715 -11.89547 -11.51007 -11.28538 -11.24562 -11.12500 -10.89883 -10.78055 -10.73029 -10.68801 -10.57144 -10.22445 -9.92741 -9.79831 -9.25961 -8.94667 -8.45716 -8.33159 -7.90215 -5.98492 -4.01780 2.35389 2.68972 3.16219 3.35410 3.39374 3.41922 3.63765 3.76451 4.34359 4.39623 4.48522 4.51120 4.53080 4.68639 4.83298 4.90622 5.03849 5.06072 5.07100 5.15463 5.16898 5.18155 5.30723 5.35172 5.37453 5.39526 5.46566 5.52005 5.55045 5.63089 5.68132 5.74534 5.76296 5.81922 5.84595 5.95906 6.06641 6.16854 6.21245 6.44422 6.53413 6.76479 6.87861 6.94721 7.13054 7.59458 7.72723 7.87927 7.93533 8.02327 8.38776 8.85327 9.05188 9.61887 11.12949 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.002725 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.618835 B =10273.649641 C =11619.012037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.459 3.541 4 O -0.472 6.472 5 C -0.075 4.075 6 H 0.107 0.893 7 C -0.144 4.144 8 C 0.058 3.942 9 N -0.494 5.494 10 C 0.031 3.969 11 C -0.101 4.101 12 C -0.100 4.100 13 C -0.122 4.122 14 C 0.104 3.896 15 N -0.617 5.617 16 C 0.129 3.871 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.526 3.474 27 O -0.511 6.511 28 C 0.067 3.933 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.020 0.980 48 H 0.016 0.984 49 H 0.261 0.739 50 H 0.087 0.913 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.404 -10.809 -19.984 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.300 3.700 4 O -0.355 6.355 5 C -0.094 4.094 6 H 0.125 0.875 7 C -0.202 4.202 8 C -0.071 4.071 9 N -0.218 5.218 10 C -0.097 4.097 11 C -0.139 4.139 12 C -0.104 4.104 13 C -0.161 4.161 14 C -0.020 4.020 15 N -0.351 5.351 16 C 0.009 3.991 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.312 3.688 27 O -0.385 6.385 28 C -0.061 4.061 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.039 0.961 48 H 0.034 0.966 49 H 0.071 0.929 50 H 0.105 0.895 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.974 -11.032 -19.752 26.080 hybrid contribution -0.146 0.836 0.580 1.028 sum 12.829 -10.196 -19.172 25.221 Atomic orbital electron populations 1.23207 0.76554 1.03218 1.02732 1.86455 1.23256 1.34048 1.84832 1.23463 0.91694 0.81411 0.73447 1.90754 1.66479 1.35885 1.42430 1.21017 0.88349 0.98232 1.01829 0.87535 1.21752 1.01525 1.01119 0.95755 1.22187 0.98146 0.92753 0.94019 1.65414 1.46233 1.06283 1.03824 1.23288 0.94017 0.99559 0.92808 1.22152 1.01176 0.92887 0.97682 1.21415 0.95769 0.96406 0.96835 1.22691 0.98578 0.95312 0.99474 1.22024 0.82193 0.99086 0.98700 1.48641 1.08292 1.24598 1.53521 1.21765 0.86744 0.94280 0.96271 1.19391 0.96971 0.97320 0.88848 1.21064 1.16300 1.21445 0.97272 0.92566 1.24999 0.96664 0.95219 0.97388 1.69967 1.40711 1.32096 1.10447 0.86617 0.82778 0.80004 0.78361 1.20141 1.21270 1.20209 1.20063 0.89547 0.80674 0.78551 1.90744 1.31381 1.57227 1.59125 1.22791 1.01358 0.87912 0.94082 0.92204 0.88493 0.91644 0.92061 0.91125 0.90978 0.89918 0.92981 0.93631 0.90142 0.90244 0.90190 0.89412 0.90151 0.90758 0.91213 0.91806 0.91267 0.96129 0.96555 0.92919 0.89472 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.32 10.49 -39.27 -0.41 -4.74 16 3 C 0.46 5.94 7.12 36.01 0.26 6.20 16 4 O -0.47 -8.00 15.12 -18.74 -0.28 -8.28 16 5 C -0.07 -0.69 2.93 -91.77 -0.27 -0.96 16 6 H 0.11 0.90 7.58 -51.93 -0.39 0.50 16 7 C -0.14 -0.89 9.12 37.16 0.34 -0.55 16 8 C 0.06 0.56 3.82 -3.83 -0.01 0.55 16 9 N -0.49 -6.43 4.49 -230.15 -1.03 -7.46 16 10 C 0.03 0.34 6.11 -1.99 -0.01 0.33 16 11 C -0.10 -1.30 6.32 -25.74 -0.16 -1.46 16 12 C -0.10 -1.41 0.83 -155.25 -0.13 -1.54 16 13 C -0.12 -1.31 6.11 -25.52 -0.16 -1.47 16 14 C 0.10 1.43 7.37 -2.93 -0.02 1.41 16 15 N -0.62 -11.74 2.95 -172.52 -0.51 -12.25 16 16 C 0.13 2.87 5.88 -4.04 -0.02 2.85 16 17 C 0.01 0.34 5.30 -27.89 -0.15 0.20 16 18 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 22 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.53 10.44 6.49 -11.23 -0.07 10.37 16 27 O -0.51 -12.66 17.47 5.55 0.10 -12.57 16 28 C 0.07 0.87 5.38 -2.57 -0.01 0.85 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.87 7.81 -51.93 -0.41 0.47 16 36 H 0.05 0.38 7.64 -51.93 -0.40 -0.02 16 37 H 0.05 0.38 7.67 -51.93 -0.40 -0.01 16 38 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 39 H 0.08 0.81 7.32 -51.93 -0.38 0.43 16 40 H 0.08 1.29 7.76 -51.93 -0.40 0.89 16 41 H 0.09 0.72 7.43 -51.93 -0.39 0.33 16 42 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.63 7.95 -51.93 -0.41 1.22 16 47 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.09 1.36 7.84 -51.93 -0.41 0.96 16 51 H 0.05 0.50 7.70 -51.93 -0.40 0.10 16 LS Contribution 410.63 15.07 6.19 6.19 Total: -1.00 -37.93 410.63 -9.00 -46.93 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.99 Total: -2.46 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 0.23 Total: 4.33 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.80 Total: -46.56 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.60 Total: -25.58 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.93 -9.00 -46.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273414429.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.678 kcal (2) G-P(sol) polarization free energy of solvation -37.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds